Wall clock time and date at job start Tue Mar 31 2020 05:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38866 * 119.24792 * 2 1 4 4 C 1.36888 * 119.79915 * 179.97438 * 3 2 1 5 5 C 1.41121 * 118.39317 * 359.97438 * 4 3 2 6 6 C 1.40887 * 120.72041 * 180.02562 * 5 4 3 7 7 H 1.07997 * 120.00499 * 153.87226 * 6 5 4 8 8 C 1.40073 * 119.99733 * 333.87213 * 6 5 4 9 9 N 1.30768 * 119.99994 * 343.73846 * 8 6 5 10 10 Si 1.86806 * 120.00065 * 163.74053 * 8 6 5 11 11 H 1.48501 * 109.47033 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47029 * 119.99871 * 10 8 6 13 13 H 1.48499 * 109.47079 * 240.00161 * 10 8 6 14 14 C 1.41866 * 118.56652 * 0.02562 * 5 4 3 15 15 C 1.47816 * 119.99496 * 180.02562 * 14 5 4 16 16 C 1.39692 * 120.15229 * 308.21696 * 15 14 5 17 17 C 1.37898 * 119.84825 * 179.79126 * 16 15 14 18 18 C 1.50697 * 119.92670 * 180.25754 * 17 16 15 19 19 C 1.38419 * 120.14944 * 0.48903 * 17 16 15 20 20 C 1.50701 * 119.84784 * 179.72273 * 19 17 16 21 21 C 1.38378 * 120.31078 * 359.74381 * 19 17 16 22 22 C 1.37950 * 120.14862 * 0.02562 * 21 19 17 23 23 C 1.50695 * 120.07501 * 180.02562 * 22 21 19 24 24 N 1.31744 * 119.24320 * 179.72574 * 2 1 3 25 25 H 1.08994 * 109.47024 * 90.00377 * 1 2 3 26 26 H 1.08995 * 109.46893 * 330.00176 * 1 2 3 27 27 H 1.09007 * 109.47188 * 210.00215 * 1 2 3 28 28 H 1.07994 * 120.10105 * 359.97438 * 3 2 1 29 29 H 1.07993 * 120.80440 * 180.02562 * 4 3 2 30 30 H 0.97005 * 119.99896 * 179.97438 * 9 8 6 31 31 H 1.07999 * 120.07448 * 0.02562 * 16 15 14 32 32 H 1.09000 * 109.46800 * 270.23472 * 18 17 16 33 33 H 1.08994 * 109.47246 * 30.22772 * 18 17 16 34 34 H 1.08995 * 109.47495 * 150.23219 * 18 17 16 35 35 H 1.08996 * 109.47398 * 270.02419 * 20 19 17 36 36 H 1.09003 * 109.47197 * 30.02291 * 20 19 17 37 37 H 1.08996 * 109.47216 * 150.01774 * 20 19 17 38 38 H 1.07997 * 119.92928 * 180.02562 * 21 19 17 39 39 H 1.09008 * 109.47019 * 267.64055 * 23 22 21 40 40 H 1.08989 * 109.47361 * 27.64445 * 23 22 21 41 41 H 1.09000 * 109.46652 * 147.64675 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2116 0.0000 4 6 3.5543 1.2248 0.0005 5 6 4.2373 -0.0101 0.0016 6 6 5.6455 -0.0538 0.0027 7 1 6.1589 -0.9096 0.4154 8 6 6.3796 1.0129 -0.5314 9 7 5.7924 1.8879 -1.3057 10 14 8.1975 1.1854 -0.1376 11 1 8.6184 0.0750 0.7540 12 1 8.9836 1.1351 -1.3965 13 1 8.4356 2.4835 0.5431 14 6 3.4753 -1.2068 0.0016 15 6 4.1582 -2.5177 0.0033 16 6 5.1462 -2.7954 -0.9444 17 6 5.7823 -4.0189 -0.9344 18 6 6.8524 -4.3182 -1.9523 19 6 5.4366 -4.9745 0.0055 20 6 6.1318 -6.3116 0.0063 21 6 4.4554 -4.7080 0.9442 22 6 3.8143 -3.4865 0.9486 23 6 2.7465 -3.1978 1.9719 24 7 2.1506 -1.1495 0.0055 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 0.8900 0.5138 27 1 -0.3634 -0.8900 0.5139 28 1 1.6349 2.1407 -0.0004 29 1 4.0984 2.1576 0.0010 30 1 6.3008 2.6268 -1.6753 31 1 5.4139 -2.0522 -1.6809 32 1 6.3976 -4.7621 -2.8378 33 1 7.3594 -3.3939 -2.2290 34 1 7.5742 -5.0151 -1.5264 35 1 5.5863 -7.0051 -0.6336 36 1 7.1480 -6.1930 -0.3697 37 1 6.1640 -6.7037 1.0228 38 1 4.1909 -5.4579 1.6750 39 1 1.7709 -3.4614 1.5633 40 1 2.9352 -3.7860 2.8699 41 1 2.7608 -2.1371 2.2226 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241626448.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:48 Heat of formation + Delta-G solvation = 10.478408 kcal Electronic energy + Delta-G solvation = -21782.534846 eV Core-core repulsion = 18818.056845 eV Total energy + Delta-G solvation = -2964.478001 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.94949 -39.71503 -36.16492 -35.36547 -33.67937 -32.66757 -31.98955 -30.13920 -29.45912 -27.97231 -26.17634 -25.36349 -23.42785 -22.95981 -22.07743 -20.31813 -19.22651 -17.41590 -17.00284 -16.70726 -16.10347 -15.80944 -15.55773 -15.14476 -14.79721 -14.76226 -14.21561 -14.12662 -13.77299 -13.60704 -13.54277 -13.46164 -13.40791 -13.19429 -13.02442 -12.74621 -12.69029 -12.63182 -12.57302 -12.25480 -12.05068 -11.87746 -11.65049 -11.44017 -11.19051 -10.22163 -9.89283 -9.55393 -9.32985 -8.91968 -8.65626 -6.37805 0.31146 0.64847 0.86777 1.16734 1.33362 1.45045 1.48319 2.14054 2.67276 2.93924 3.63421 3.84019 4.06598 4.07833 4.22219 4.36047 4.39743 4.45714 4.51691 4.62441 4.76836 4.79943 4.81202 4.88237 4.94882 4.96616 4.97548 5.00925 5.02905 5.07717 5.15427 5.17228 5.20573 5.26924 5.34730 5.44170 5.54892 5.68327 5.79906 5.87071 5.95378 6.06849 6.09437 6.33133 6.52240 6.73201 6.81765 7.75562 8.20578 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011029 B = 0.008665 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.145901 B = 3230.686977 C = 5226.639405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.023 4.023 3 C -0.149 4.149 4 C -0.154 4.154 5 C 0.051 3.949 6 C -0.456 4.456 7 H 0.076 0.924 8 C 0.039 3.961 9 N -0.816 5.816 10 Si 0.974 3.026 11 H -0.260 1.260 12 H -0.261 1.261 13 H -0.261 1.261 14 C 0.012 3.988 15 C -0.014 4.014 16 C -0.104 4.104 17 C -0.109 4.109 18 C -0.108 4.108 19 C -0.100 4.100 20 C -0.106 4.106 21 C -0.125 4.125 22 C -0.096 4.096 23 C -0.085 4.085 24 N -0.458 5.458 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.061 0.939 28 H 0.125 0.875 29 H 0.113 0.887 30 H 0.292 0.708 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.054 0.946 34 H 0.091 0.909 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.144 0.856 39 H 0.066 0.934 40 H 0.077 0.923 41 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.572 -9.106 1.992 9.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.164 4.164 3 C -0.169 4.169 4 C -0.179 4.179 5 C 0.046 3.954 6 C -0.485 4.485 7 H 0.094 0.906 8 C -0.177 4.177 9 N -0.441 5.441 10 Si 0.794 3.206 11 H -0.183 1.183 12 H -0.186 1.186 13 H -0.186 1.186 14 C -0.127 4.127 15 C -0.015 4.015 16 C -0.123 4.123 17 C -0.109 4.109 18 C -0.164 4.164 19 C -0.100 4.100 20 C -0.162 4.162 21 C -0.143 4.143 22 C -0.097 4.097 23 C -0.142 4.142 24 N -0.166 5.166 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.080 0.920 28 H 0.143 0.857 29 H 0.131 0.869 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.162 0.838 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 1.124 -9.644 1.845 9.883 hybrid contribution 1.001 1.841 -0.168 2.103 sum 2.126 -7.802 1.678 8.259 Atomic orbital electron populations 1.20320 0.88126 1.02349 1.01649 1.21076 0.97222 0.88138 1.09945 1.21538 0.94824 0.98617 1.01888 1.21401 0.93754 0.98207 1.04581 1.18696 0.94979 0.91640 0.90060 1.19602 0.91103 1.03689 1.34096 0.90599 1.26751 1.05540 0.93561 0.91896 1.69811 1.40689 1.11770 1.21810 0.85262 0.76213 0.79558 0.79529 1.18321 1.18584 1.18569 1.19838 0.88691 0.92190 1.11940 1.18421 0.95796 0.91666 0.95641 1.21060 0.96551 0.96511 0.98207 1.19912 0.99128 0.93121 0.98724 1.20830 0.96272 1.02302 0.97037 1.20093 0.97525 0.97226 0.95189 1.20835 1.00264 0.91696 1.03376 1.20995 0.97145 0.95929 1.00241 1.20208 0.98492 0.94068 0.96902 1.20493 0.96659 1.00499 0.96510 1.67032 1.09455 1.29734 1.10421 0.92081 0.90410 0.92038 0.85738 0.86878 0.89699 0.88496 0.90493 0.92704 0.89062 0.90262 0.90294 0.90552 0.83848 0.91573 0.90392 0.94695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.33 10.15 71.24 0.72 -1.61 16 2 C -0.02 -1.04 6.79 42.72 0.29 -0.75 16 3 C -0.15 -7.00 9.64 22.10 0.21 -6.78 16 4 C -0.15 -8.13 8.74 22.66 0.20 -7.93 16 5 C 0.05 2.78 5.56 -21.03 -0.12 2.66 16 6 C -0.46 -24.31 7.25 23.36 0.17 -24.14 16 7 H 0.08 4.08 6.69 -2.91 -0.02 4.06 16 8 C 0.04 1.92 5.18 85.30 0.44 2.36 16 9 N -0.82 -41.49 11.01 21.85 0.24 -41.25 16 10 Si 0.97 37.68 29.59 68.60 2.03 39.71 16 11 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 12 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 13 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 14 C 0.01 0.62 5.36 42.46 0.23 0.85 16 15 C -0.01 -0.68 5.00 -20.05 -0.10 -0.78 16 16 C -0.10 -4.65 7.70 22.54 0.17 -4.47 16 17 C -0.11 -3.88 5.87 -19.90 -0.12 -3.99 16 18 C -0.11 -2.97 9.59 71.24 0.68 -2.29 16 19 C -0.10 -3.13 5.89 -19.79 -0.12 -3.24 16 20 C -0.11 -2.21 9.59 71.24 0.68 -1.53 16 21 C -0.13 -4.17 9.33 22.23 0.21 -3.96 16 22 C -0.10 -3.90 5.91 -19.59 -0.12 -4.02 16 23 C -0.08 -3.17 8.91 71.23 0.63 -2.53 16 24 N -0.46 -22.90 8.87 -171.14 -1.52 -24.42 16 25 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 26 H 0.08 2.28 8.07 -2.39 -0.02 2.26 16 27 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.12 5.00 8.06 -2.91 -0.02 4.97 16 29 H 0.11 6.10 6.33 -2.91 -0.02 6.08 16 30 H 0.29 13.32 8.29 -92.70 -0.77 12.56 16 31 H 0.10 4.74 7.45 -2.91 -0.02 4.72 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.05 1.59 8.08 -2.39 -0.02 1.57 16 34 H 0.09 1.97 5.93 -2.39 -0.01 1.96 16 35 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.46 5.93 -2.39 -0.01 1.44 16 37 H 0.08 1.36 8.08 -2.39 -0.02 1.34 16 38 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 39 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 40 H 0.08 2.33 8.07 -2.39 -0.02 2.31 16 41 H 0.03 1.49 6.90 -2.39 -0.02 1.47 16 Total: -1.00 -62.97 333.91 5.86 -57.11 By element: Atomic # 1 Polarization: 29.99 SS G_CDS: 1.03 Total: 31.01 kcal Atomic # 6 Polarization: -66.25 SS G_CDS: 4.08 Total: -62.17 kcal Atomic # 7 Polarization: -64.39 SS G_CDS: -1.28 Total: -65.67 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.03 Total: 39.71 kcal Total: -62.97 5.86 -57.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241626448.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.588 kcal (2) G-P(sol) polarization free energy of solvation -62.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds