Wall clock time and date at job start Tue Mar 31 2020 05:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46927 * 2 1 4 4 C 1.50704 * 109.46929 * 180.02562 * 3 2 1 5 5 C 1.38392 * 119.84858 * 269.71823 * 4 3 2 6 6 C 1.37935 * 120.14672 * 179.76789 * 5 4 3 7 7 C 1.39609 * 119.84791 * 0.52966 * 6 5 4 8 8 C 1.47963 * 120.14320 * 179.70517 * 7 6 5 9 9 C 1.39891 * 119.45146 * 0.02562 * 8 7 6 10 10 C 1.36610 * 119.46889 * 179.97438 * 9 8 7 11 11 C 1.41298 * 118.41368 * 0.02562 * 10 9 8 12 12 C 1.41051 * 120.55621 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00217 * 154.67126 * 12 11 10 14 14 C 1.40031 * 119.99605 * 334.66319 * 12 11 10 15 15 N 1.30785 * 120.00229 * 343.68643 * 14 12 11 16 16 Si 1.86803 * 119.99826 * 163.68235 * 14 12 11 17 17 H 1.48504 * 109.47115 * 60.00403 * 16 14 12 18 18 H 1.48498 * 109.46937 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47078 * 300.00383 * 16 14 12 20 20 C 1.40952 * 118.89092 * 359.97438 * 11 10 9 21 21 C 1.50697 * 119.79831 * 180.02562 * 20 11 10 22 22 N 1.31259 * 120.40083 * 359.74660 * 20 11 10 23 23 C 1.39603 * 119.71173 * 359.72710 * 7 6 5 24 24 C 1.37931 * 119.85353 * 359.97438 * 23 7 6 25 25 H 1.09001 * 109.46974 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47616 * 300.00187 * 1 2 3 27 27 H 1.08997 * 109.46958 * 60.00963 * 1 2 3 28 28 H 1.09000 * 109.47616 * 239.99813 * 2 1 3 29 29 H 1.08998 * 109.47131 * 119.99560 * 2 1 3 30 30 H 1.09007 * 109.46587 * 299.99168 * 3 2 1 31 31 H 1.08999 * 109.47480 * 59.99923 * 3 2 1 32 32 H 1.08000 * 119.92604 * 0.02562 * 5 4 3 33 33 H 1.07998 * 120.07890 * 180.27980 * 6 5 4 34 34 H 1.08000 * 120.26408 * 0.02562 * 9 8 7 35 35 H 1.08004 * 120.79495 * 179.97438 * 10 9 8 36 36 H 0.97000 * 120.00174 * 179.97438 * 15 14 12 37 37 H 1.09009 * 109.47179 * 90.00255 * 21 20 11 38 38 H 1.08998 * 109.47425 * 210.00059 * 21 20 11 39 39 H 1.08998 * 109.47531 * 330.00164 * 21 20 11 40 40 H 1.08002 * 120.07216 * 180.02562 * 23 7 6 41 41 H 1.08001 * 119.92969 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2363 1.4483 1.1994 6 6 5.6156 1.4435 1.2060 7 6 6.3163 1.4440 -0.0015 8 6 7.7959 1.4455 -0.0020 9 6 8.4841 1.4457 1.2159 10 6 9.8502 1.4465 1.2158 11 6 10.5225 1.4476 -0.0270 12 6 11.9321 1.4490 -0.0798 13 1 12.4404 1.0497 -0.9449 14 6 12.6721 1.9684 0.9895 15 7 12.0898 2.7300 1.8791 16 14 14.4912 1.5733 1.1454 17 1 15.2091 2.0628 -0.0589 18 1 15.0407 2.2397 2.3534 19 1 14.6701 0.1041 1.2653 20 6 9.7611 1.4473 -1.2132 21 6 10.4570 1.4478 -2.5498 22 7 8.4496 1.4410 -1.1606 23 6 5.6148 1.4436 -1.2085 24 6 4.2355 1.4422 -1.2010 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9562 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 3.6930 1.4523 2.1328 33 1 6.1524 1.4434 2.1431 34 1 7.9398 1.4445 2.1487 35 1 10.4032 1.4472 2.1435 36 1 12.6024 3.0894 2.6200 37 1 10.6254 0.4202 -2.8722 38 1 9.8352 1.9613 -3.2831 39 1 11.4139 1.9622 -2.4611 40 1 6.1509 1.4436 -2.1461 41 1 3.6915 1.4415 -2.1341 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241688622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:07 Heat of formation + Delta-G solvation = 16.611207 kcal Electronic energy + Delta-G solvation = -20454.481366 eV Core-core repulsion = 17490.269303 eV Total energy + Delta-G solvation = -2964.212063 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -39.20377 -38.14725 -35.13585 -34.16653 -32.21150 -31.08002 -30.32410 -29.93724 -26.99053 -26.76664 -24.43397 -22.37057 -22.26731 -21.24219 -20.24804 -19.80233 -17.47462 -16.37312 -15.62902 -15.25808 -15.00822 -14.64022 -14.10826 -13.75490 -13.61511 -13.34344 -13.21214 -12.99213 -12.77287 -12.33790 -12.08080 -12.01427 -11.72844 -11.62902 -11.56362 -11.37135 -11.18266 -11.00072 -10.92460 -10.77838 -10.69220 -10.40316 -10.38705 -9.82803 -9.52657 -8.50284 -8.40824 -8.24731 -8.07622 -7.21830 -6.96651 -4.56036 1.57632 1.97590 2.65936 2.90518 2.93094 2.95380 3.15352 3.71953 4.20960 4.63653 4.92645 4.93890 5.09952 5.28138 5.38413 5.46761 5.53170 5.55332 5.63854 5.76076 5.80595 5.92706 5.95481 6.01248 6.05284 6.23371 6.28073 6.30026 6.43463 6.53344 6.60971 6.62821 6.72525 6.78515 6.82025 6.96321 7.04529 7.09193 7.25082 7.33787 7.51674 7.69438 7.78257 7.87865 8.29168 8.49745 8.60521 9.56496 9.87193 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.039475 B = 0.003192 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.137246 B = 8769.887759 C = 9278.121201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.073 4.073 4 C -0.117 4.117 5 C -0.114 4.114 6 C -0.133 4.133 7 C 0.018 3.982 8 C -0.002 4.002 9 C -0.126 4.126 10 C -0.143 4.143 11 C 0.074 3.926 12 C -0.431 4.431 13 H 0.089 0.911 14 C 0.072 3.928 15 N -0.777 5.777 16 Si 0.915 3.085 17 H -0.261 1.261 18 H -0.276 1.276 19 H -0.261 1.261 20 C 0.008 3.992 21 C -0.071 4.071 22 N -0.447 5.447 23 C -0.111 4.111 24 C -0.117 4.117 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.112 0.888 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.126 0.874 36 H 0.287 0.713 37 H 0.048 0.952 38 H 0.049 0.951 39 H 0.067 0.933 40 H 0.127 0.873 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.836 -2.302 -0.581 11.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.110 4.110 4 C -0.118 4.118 5 C -0.132 4.132 6 C -0.152 4.152 7 C 0.017 3.983 8 C -0.136 4.136 9 C -0.146 4.146 10 C -0.167 4.167 11 C 0.069 3.931 12 C -0.460 4.460 13 H 0.107 0.893 14 C -0.149 4.149 15 N -0.400 5.400 16 Si 0.739 3.261 17 H -0.186 1.186 18 H -0.201 1.201 19 H -0.185 1.185 20 C -0.138 4.138 21 C -0.129 4.129 22 N -0.155 5.155 23 C -0.130 4.130 24 C -0.135 4.135 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.130 0.870 33 H 0.137 0.863 34 H 0.119 0.881 35 H 0.144 0.856 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.145 0.855 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -11.262 -2.150 -1.109 11.518 hybrid contribution 1.366 -0.033 1.134 1.775 sum -9.896 -2.183 0.024 10.134 Atomic orbital electron populations 1.21796 0.96151 1.01385 1.01611 1.21526 0.95089 0.96715 1.02387 1.20519 0.91700 0.96707 1.02068 1.19702 0.94833 1.03896 0.93333 1.20754 0.93877 1.01684 0.96896 1.21167 0.93709 1.02668 0.97618 1.18693 0.91605 0.95429 0.92591 1.18762 0.90845 1.15066 0.88938 1.21302 0.95269 1.01202 0.96834 1.21306 0.92539 1.04110 0.98784 1.18418 0.94211 0.88976 0.91516 1.19664 0.91115 1.32712 1.02514 0.89324 1.26100 1.01918 0.92507 0.94387 1.69771 1.39226 1.20689 1.10357 0.86232 0.80839 0.80144 0.78915 1.18575 1.20070 1.18492 1.21004 0.88446 1.09667 0.94684 1.20257 0.99286 1.00373 0.92972 1.66721 1.10259 1.09676 1.28834 1.21240 0.93145 1.00143 0.98445 1.20857 0.94175 1.01602 0.96838 0.92937 0.92872 0.92868 0.91935 0.91962 0.91659 0.91672 0.87010 0.86307 0.88109 0.85615 0.90163 0.93323 0.93165 0.91460 0.85523 0.87059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 37.16 0.37 -0.91 16 2 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 3 C -0.07 -0.83 5.34 -27.88 -0.15 -0.98 16 4 C -0.12 -1.73 5.14 -104.51 -0.54 -2.27 16 5 C -0.11 -1.77 9.68 -39.64 -0.38 -2.16 16 6 C -0.13 -2.40 9.42 -39.18 -0.37 -2.77 16 7 C 0.02 0.37 5.88 -104.89 -0.62 -0.25 16 8 C 0.00 -0.05 6.74 -82.75 -0.56 -0.61 16 9 C -0.13 -2.97 9.38 -39.55 -0.37 -3.34 16 10 C -0.14 -3.60 8.73 -39.01 -0.34 -3.95 16 11 C 0.07 1.89 5.58 -106.64 -0.59 1.30 16 12 C -0.43 -10.57 8.14 -37.84 -0.31 -10.88 16 13 H 0.09 2.04 6.86 -52.49 -0.36 1.68 16 14 C 0.07 1.66 5.19 -17.33 -0.09 1.57 16 15 N -0.78 -18.75 10.95 55.55 0.61 -18.14 16 16 Si 0.92 17.21 29.59 -169.99 -5.03 12.18 16 17 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 18 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 19 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 20 C 0.01 0.19 6.86 -81.81 -0.56 -0.37 16 21 C -0.07 -1.47 9.58 36.00 0.34 -1.13 16 22 N -0.45 -11.03 9.30 -5.39 -0.05 -11.09 16 23 C -0.11 -2.11 9.57 -39.18 -0.38 -2.49 16 24 C -0.12 -1.87 9.68 -39.64 -0.38 -2.25 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 31 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 32 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.12 2.03 6.15 -52.49 -0.32 1.71 16 34 H 0.10 2.10 6.15 -52.49 -0.32 1.77 16 35 H 0.13 3.19 6.26 -52.48 -0.33 2.86 16 36 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16 37 H 0.05 0.92 8.14 -51.92 -0.42 0.50 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.35 6.76 -51.93 -0.35 1.00 16 40 H 0.13 2.47 7.52 -52.49 -0.39 2.08 16 41 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 339.16 15.07 5.11 5.11 Total: -1.00 -26.88 339.16 -10.30 -37.19 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.86 Total: 7.62 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: -5.08 Total: -32.87 kcal Atomic # 7 Polarization: -29.78 SS G_CDS: 0.56 Total: -29.22 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.18 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -26.88 -10.30 -37.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241688622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.798 kcal (2) G-P(sol) polarization free energy of solvation -26.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds