Wall clock time and date at job start Tue Mar 31 2020 05:13:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.46927 * 2 1 4 4 C 1.50704 * 109.46929 * 180.02562 * 3 2 1 5 5 C 1.38392 * 119.84858 * 269.71823 * 4 3 2 6 6 C 1.37935 * 120.14672 * 179.76789 * 5 4 3 7 7 C 1.39609 * 119.84791 * 0.52966 * 6 5 4 8 8 C 1.47963 * 120.14320 * 179.70517 * 7 6 5 9 9 C 1.39891 * 119.45146 * 0.02562 * 8 7 6 10 10 C 1.36610 * 119.46889 * 179.97438 * 9 8 7 11 11 C 1.41298 * 118.41368 * 0.02562 * 10 9 8 12 12 C 1.41051 * 120.55621 * 179.97438 * 11 10 9 13 13 H 1.07994 * 120.00217 * 154.67126 * 12 11 10 14 14 C 1.40031 * 119.99605 * 334.66319 * 12 11 10 15 15 N 1.30785 * 120.00229 * 343.68643 * 14 12 11 16 16 Si 1.86803 * 119.99826 * 163.68235 * 14 12 11 17 17 H 1.48504 * 109.47115 * 60.00403 * 16 14 12 18 18 H 1.48498 * 109.46937 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47078 * 300.00383 * 16 14 12 20 20 C 1.40952 * 118.89092 * 359.97438 * 11 10 9 21 21 C 1.50697 * 119.79831 * 180.02562 * 20 11 10 22 22 N 1.31259 * 120.40083 * 359.74660 * 20 11 10 23 23 C 1.39603 * 119.71173 * 359.72710 * 7 6 5 24 24 C 1.37931 * 119.85353 * 359.97438 * 23 7 6 25 25 H 1.09001 * 109.46974 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47616 * 300.00187 * 1 2 3 27 27 H 1.08997 * 109.46958 * 60.00963 * 1 2 3 28 28 H 1.09000 * 109.47616 * 239.99813 * 2 1 3 29 29 H 1.08998 * 109.47131 * 119.99560 * 2 1 3 30 30 H 1.09007 * 109.46587 * 299.99168 * 3 2 1 31 31 H 1.08999 * 109.47480 * 59.99923 * 3 2 1 32 32 H 1.08000 * 119.92604 * 0.02562 * 5 4 3 33 33 H 1.07998 * 120.07890 * 180.27980 * 6 5 4 34 34 H 1.08000 * 120.26408 * 0.02562 * 9 8 7 35 35 H 1.08004 * 120.79495 * 179.97438 * 10 9 8 36 36 H 0.97000 * 120.00174 * 179.97438 * 15 14 12 37 37 H 1.09009 * 109.47179 * 90.00255 * 21 20 11 38 38 H 1.08998 * 109.47425 * 210.00059 * 21 20 11 39 39 H 1.08998 * 109.47531 * 330.00164 * 21 20 11 40 40 H 1.08002 * 120.07216 * 180.02562 * 23 7 6 41 41 H 1.08001 * 119.92969 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.2363 1.4483 1.1994 6 6 5.6156 1.4435 1.2060 7 6 6.3163 1.4440 -0.0015 8 6 7.7959 1.4455 -0.0020 9 6 8.4841 1.4457 1.2159 10 6 9.8502 1.4465 1.2158 11 6 10.5225 1.4476 -0.0270 12 6 11.9321 1.4490 -0.0798 13 1 12.4404 1.0497 -0.9449 14 6 12.6721 1.9684 0.9895 15 7 12.0898 2.7300 1.8791 16 14 14.4912 1.5733 1.1454 17 1 15.2091 2.0628 -0.0589 18 1 15.0407 2.2397 2.3534 19 1 14.6701 0.1041 1.2653 20 6 9.7611 1.4473 -1.2132 21 6 10.4570 1.4478 -2.5498 22 7 8.4496 1.4410 -1.1606 23 6 5.6148 1.4436 -1.2085 24 6 4.2355 1.4422 -1.2010 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9562 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 3.6930 1.4523 2.1328 33 1 6.1524 1.4434 2.1431 34 1 7.9398 1.4445 2.1487 35 1 10.4032 1.4472 2.1435 36 1 12.6024 3.0894 2.6200 37 1 10.6254 0.4202 -2.8722 38 1 9.8352 1.9613 -3.2831 39 1 11.4139 1.9622 -2.4611 40 1 6.1509 1.4436 -2.1461 41 1 3.6915 1.4415 -2.1341 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241688622.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:06 Heat of formation + Delta-G solvation = 5.929438 kcal Electronic energy + Delta-G solvation = -20454.944563 eV Core-core repulsion = 17490.269303 eV Total energy + Delta-G solvation = -2964.675259 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.78597 -39.68991 -36.40543 -35.68595 -33.79958 -32.78248 -31.71304 -31.34441 -28.75535 -28.03037 -25.93805 -23.79019 -23.74388 -22.40707 -21.83325 -21.26565 -19.28454 -17.92602 -17.20855 -16.68859 -16.28515 -16.01033 -15.59841 -15.03511 -15.00334 -14.89547 -14.47016 -14.37673 -14.15532 -13.77405 -13.48075 -13.46693 -13.37188 -13.04062 -12.79501 -12.71125 -12.69147 -12.60530 -12.20248 -11.96179 -11.88593 -11.66060 -11.57795 -11.40528 -11.22668 -10.25543 -9.94872 -9.91900 -9.75231 -8.91730 -8.68906 -6.40608 0.06755 0.61785 0.95111 1.14877 1.38329 1.50333 1.57830 2.14878 2.60927 3.06074 3.70570 3.73643 3.92253 4.01414 4.17471 4.25011 4.32706 4.36618 4.46606 4.55084 4.63376 4.68150 4.74103 4.88618 4.94126 4.96299 4.97251 5.01029 5.08035 5.08746 5.16565 5.23668 5.27670 5.32207 5.36538 5.49199 5.50978 5.54130 5.76565 5.80788 5.82820 5.97669 6.07508 6.24505 6.45129 6.68030 6.76124 7.70716 8.16465 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.039475 B = 0.003192 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.137246 B = 8769.887759 C = 9278.121201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.071 4.071 4 C -0.101 4.101 5 C -0.113 4.113 6 C -0.136 4.136 7 C -0.023 4.023 8 C -0.009 4.009 9 C -0.136 4.136 10 C -0.163 4.163 11 C 0.042 3.958 12 C -0.458 4.458 13 H 0.096 0.904 14 C 0.033 3.967 15 N -0.811 5.811 16 Si 0.989 3.011 17 H -0.253 1.253 18 H -0.268 1.268 19 H -0.258 1.258 20 C -0.016 4.016 21 C -0.064 4.064 22 N -0.463 5.463 23 C -0.122 4.122 24 C -0.117 4.117 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.144 0.856 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.117 0.883 36 H 0.295 0.705 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.112 0.888 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.707 -2.493 -0.462 12.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.108 4.108 4 C -0.101 4.101 5 C -0.131 4.131 6 C -0.155 4.155 7 C -0.024 4.024 8 C -0.143 4.143 9 C -0.156 4.156 10 C -0.188 4.188 11 C 0.037 3.963 12 C -0.486 4.486 13 H 0.114 0.886 14 C -0.185 4.185 15 N -0.435 5.435 16 Si 0.809 3.191 17 H -0.177 1.177 18 H -0.192 1.192 19 H -0.183 1.183 20 C -0.161 4.161 21 C -0.121 4.121 22 N -0.171 5.171 23 C -0.141 4.141 24 C -0.135 4.135 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.162 0.838 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.106 0.894 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.130 0.870 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.146 -2.339 -1.004 13.390 hybrid contribution 1.655 0.033 1.103 1.989 sum -11.491 -2.306 0.099 11.720 Atomic orbital electron populations 1.21764 0.94460 1.02055 1.02331 1.21500 0.96551 0.95694 1.01863 1.20608 0.88770 0.97784 1.03613 1.20185 0.96973 1.00480 0.92478 1.21124 0.92858 1.00402 0.98726 1.21316 0.95020 1.02333 0.96798 1.18754 0.90151 0.99041 0.94417 1.19368 0.92766 1.13463 0.88716 1.21542 0.94937 1.01107 0.97994 1.21361 0.93348 1.05521 0.98587 1.18781 0.95314 0.90136 0.92037 1.19915 0.91010 1.33848 1.03808 0.88594 1.26986 1.06425 0.91608 0.93459 1.69823 1.41215 1.21417 1.11024 0.85124 0.74908 0.79813 0.79252 1.17730 1.19235 1.18255 1.21611 0.88802 1.09568 0.96076 1.20242 0.99094 1.01427 0.91344 1.66829 1.10365 1.10542 1.29392 1.21245 0.94608 1.00931 0.97330 1.21140 0.92926 1.00689 0.98740 0.92386 0.92100 0.92222 0.92649 0.92433 0.90310 0.90042 0.83809 0.85962 0.85999 0.86560 0.89433 0.91886 0.92212 0.91216 0.87002 0.84402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 71.98 0.71 -1.26 16 2 C -0.12 -2.05 5.92 30.59 0.18 -1.87 16 3 C -0.07 -1.32 5.34 29.85 0.16 -1.16 16 4 C -0.10 -2.68 5.14 -19.79 -0.10 -2.78 16 5 C -0.11 -3.22 9.68 22.23 0.22 -3.01 16 6 C -0.14 -4.80 9.42 22.53 0.21 -4.59 16 7 C -0.02 -0.96 5.88 -20.04 -0.12 -1.08 16 8 C -0.01 -0.42 6.74 41.94 0.28 -0.14 16 9 C -0.14 -6.67 9.38 22.29 0.21 -6.46 16 10 C -0.16 -8.66 8.73 22.64 0.20 -8.46 16 11 C 0.04 2.25 5.58 -21.17 -0.12 2.13 16 12 C -0.46 -23.12 8.14 23.40 0.19 -22.93 16 13 H 0.10 4.51 6.86 -2.91 -0.02 4.49 16 14 C 0.03 1.55 5.19 85.28 0.44 1.99 16 15 N -0.81 -40.26 10.95 21.84 0.24 -40.02 16 16 Si 0.99 35.33 29.59 68.60 2.03 37.36 16 17 H -0.25 -8.66 7.11 99.48 0.71 -7.96 16 18 H -0.27 -9.12 7.11 99.48 0.71 -8.42 16 19 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 20 C -0.02 -0.81 6.86 43.31 0.30 -0.51 16 21 C -0.06 -2.68 9.58 71.24 0.68 -2.00 16 22 N -0.46 -23.74 9.30 -170.98 -1.59 -25.34 16 23 C -0.12 -4.66 9.57 22.53 0.22 -4.44 16 24 C -0.12 -3.51 9.68 22.23 0.22 -3.30 16 25 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.32 8.08 -2.38 -0.02 1.30 16 31 H 0.08 1.33 8.08 -2.39 -0.02 1.31 16 32 H 0.14 3.16 8.06 -2.91 -0.02 3.14 16 33 H 0.12 4.12 6.15 -2.91 -0.02 4.11 16 34 H 0.12 5.23 6.15 -2.91 -0.02 5.22 16 35 H 0.12 6.24 6.26 -2.91 -0.02 6.23 16 36 H 0.29 13.14 8.30 -92.71 -0.77 12.37 16 37 H 0.06 2.42 8.14 -2.38 -0.02 2.40 16 38 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 39 H 0.07 2.84 6.76 -2.39 -0.02 2.83 16 40 H 0.11 4.50 7.52 -2.91 -0.02 4.48 16 41 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 Total: -1.00 -60.49 339.16 5.57 -54.92 By element: Atomic # 1 Polarization: 31.92 SS G_CDS: 1.02 Total: 32.94 kcal Atomic # 6 Polarization: -63.74 SS G_CDS: 3.88 Total: -59.86 kcal Atomic # 7 Polarization: -64.00 SS G_CDS: -1.35 Total: -65.35 kcal Atomic # 14 Polarization: 35.33 SS G_CDS: 2.03 Total: 37.36 kcal Total: -60.49 5.57 -54.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241688622.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.845 kcal (2) G-P(sol) polarization free energy of solvation -60.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds