Wall clock time and date at job start Tue Mar 31 2020 05:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99878 * 2 1 4 4 C 1.39456 * 111.00325 * 123.95539 * 2 1 3 5 5 C 1.38789 * 120.13753 * 300.02445 * 4 2 1 6 6 C 1.38128 * 120.04320 * 180.02562 * 5 4 2 7 7 C 1.38418 * 120.32472 * 359.96958 * 6 5 4 8 8 C 1.38014 * 120.27997 * 359.73132 * 7 6 5 9 9 C 1.39280 * 119.95004 * 0.56689 * 8 7 6 10 10 C 1.48294 * 120.16456 * 179.70386 * 9 8 7 11 11 C 1.39385 * 120.12266 * 309.73068 * 10 9 8 12 12 C 1.38006 * 119.87336 * 179.97438 * 11 10 9 13 13 C 1.38324 * 120.12379 * 0.02562 * 12 11 10 14 14 C 1.50707 * 119.87396 * 180.02562 * 13 12 11 15 15 C 1.50694 * 109.47240 * 269.95917 * 14 13 12 16 16 H 1.08008 * 120.00012 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00118 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99951 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 120.00050 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47087 * 60.00082 * 19 17 15 21 21 H 1.48496 * 109.46866 * 180.02562 * 19 17 15 22 22 H 1.48506 * 109.47058 * 300.00176 * 19 17 15 23 23 C 1.38324 * 120.25717 * 359.95819 * 13 12 11 24 24 C 1.38013 * 120.12531 * 0.04587 * 23 13 12 25 25 H 1.09000 * 109.47112 * 296.04494 * 1 2 3 26 26 H 1.08998 * 109.47115 * 56.04195 * 1 2 3 27 27 H 1.08994 * 109.47178 * 176.04637 * 1 2 3 28 28 H 1.08997 * 109.47301 * 183.95807 * 3 2 1 29 29 H 1.08998 * 109.47099 * 303.95600 * 3 2 1 30 30 H 1.08998 * 109.47343 * 63.95358 * 3 2 1 31 31 H 1.07997 * 119.97773 * 359.97020 * 5 4 2 32 32 H 1.07996 * 119.83927 * 179.97438 * 6 5 4 33 33 H 1.08000 * 119.85995 * 179.97438 * 7 6 5 34 34 H 1.07998 * 120.02764 * 180.27857 * 8 7 6 35 35 H 1.08005 * 120.06308 * 359.69643 * 11 10 9 36 36 H 1.08000 * 119.93426 * 179.97438 * 12 11 10 37 37 H 1.08999 * 109.46876 * 29.95986 * 14 13 12 38 38 H 1.09000 * 109.47241 * 149.95680 * 14 13 12 39 39 H 0.97000 * 120.00104 * 179.97438 * 18 17 15 40 40 H 1.07996 * 119.94518 * 180.02562 * 23 13 12 41 41 H 1.07991 * 120.06906 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9688 -0.7272 1.0799 5 6 1.6579 -0.3488 2.3785 6 6 2.1545 -1.0701 3.4467 7 6 2.9629 -2.1726 3.2301 8 6 3.2755 -2.5645 1.9442 9 6 2.7862 -1.8418 0.8587 10 6 3.1245 -2.2547 -0.5248 11 6 4.4512 -2.4945 -0.8786 12 6 4.7602 -2.8790 -2.1675 13 6 3.7563 -3.0261 -3.1076 14 6 4.1000 -3.4468 -4.5133 15 6 4.3619 -2.2239 -5.3539 16 1 4.2866 -1.2402 -4.9143 17 6 4.6978 -2.3606 -6.6841 18 7 4.7900 -3.5583 -7.2193 19 14 5.0218 -0.8445 -7.7262 20 1 6.1546 -0.0787 -7.1472 21 1 5.3606 -1.2591 -9.1113 22 1 3.8071 0.0096 -7.7488 23 6 2.4379 -2.7899 -2.7621 24 6 2.1171 -2.4048 -1.4762 25 1 -0.3633 0.4512 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0827 1.3433 -0.0709 29 1 1.5897 1.9163 -0.8524 30 1 1.7044 1.8724 0.9233 31 1 1.0281 0.5108 2.5539 32 1 1.9108 -0.7725 4.4558 33 1 3.3474 -2.7310 4.0708 34 1 3.9029 -3.4280 1.7798 35 1 5.2364 -2.3752 -0.1466 36 1 5.7879 -3.0646 -2.4428 37 1 4.9911 -4.0743 -4.4971 38 1 3.2680 -4.0084 -4.9382 39 1 5.0259 -3.6545 -8.1552 40 1 1.6580 -2.9066 -3.5000 41 1 1.0874 -2.2210 -1.2074 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242185105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:57 Heat of formation + Delta-G solvation = 50.385529 kcal Electronic energy + Delta-G solvation = -21055.435983 eV Core-core repulsion = 18092.688485 eV Total energy + Delta-G solvation = -2962.747498 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.13198 -38.16054 -36.51177 -33.66928 -32.16344 -30.28115 -30.00760 -29.62139 -27.65042 -26.62875 -24.59839 -23.57654 -22.12120 -21.62185 -20.76902 -19.87350 -17.25815 -16.27976 -16.05560 -15.64055 -15.11946 -14.95966 -14.50569 -14.31800 -14.08740 -13.97928 -13.65387 -12.75357 -12.71147 -12.62830 -12.47642 -12.27702 -12.19213 -11.81575 -11.71947 -11.51514 -11.26327 -11.14250 -10.91797 -10.65950 -10.47399 -10.12155 -9.52879 -9.40166 -8.92410 -8.71956 -8.49063 -8.38328 -8.12377 -7.43822 -6.00259 -4.03806 1.15535 1.27782 2.21116 2.31031 3.34648 3.38322 3.42007 3.70935 3.83270 4.43312 4.64210 4.82840 4.87768 4.99545 5.07746 5.19732 5.29818 5.33923 5.34878 5.44674 5.56436 5.62822 5.67045 5.72309 5.82696 5.86550 5.93644 6.09884 6.24834 6.30492 6.36788 6.41482 6.51863 6.77427 6.78461 6.83917 6.87136 7.24748 7.27148 7.30228 7.43816 7.55905 7.83571 7.93237 7.95899 8.37081 9.01469 9.59636 11.09509 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023573 B = 0.004046 C = 0.003710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.489338 B = 6919.302660 C = 7544.893589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.501 5.501 3 C 0.032 3.968 4 C 0.092 3.908 5 C -0.149 4.149 6 C -0.122 4.122 7 C -0.122 4.122 8 C -0.109 4.109 9 C -0.002 4.002 10 C -0.079 4.079 11 C -0.108 4.108 12 C -0.130 4.130 13 C -0.026 4.026 14 C 0.046 3.954 15 C -0.509 4.509 16 H 0.057 0.943 17 C 0.058 3.942 18 N -0.896 5.896 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.276 1.276 23 C -0.131 4.131 24 C -0.073 4.073 25 H 0.026 0.974 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.025 0.975 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.108 0.892 36 H 0.116 0.884 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.262 0.738 40 H 0.116 0.884 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.688 5.404 19.867 21.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.221 5.221 3 C -0.115 4.115 4 C -0.002 4.002 5 C -0.169 4.169 6 C -0.141 4.141 7 C -0.140 4.140 8 C -0.127 4.127 9 C -0.003 4.003 10 C -0.079 4.079 11 C -0.126 4.126 12 C -0.148 4.148 13 C -0.026 4.026 14 C 0.010 3.990 15 C -0.548 4.548 16 H 0.075 0.925 17 C -0.143 4.143 18 N -0.535 5.535 19 Si 0.723 3.277 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.149 4.149 24 C -0.091 4.091 25 H 0.045 0.955 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.145 0.855 35 H 0.126 0.874 36 H 0.134 0.866 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.134 0.866 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -6.506 5.107 19.233 20.936 hybrid contribution -0.078 1.343 0.094 1.348 sum -6.583 6.450 19.326 21.411 Atomic orbital electron populations 1.22461 0.86177 1.02621 1.00552 1.59427 1.07913 1.13898 1.40841 1.22413 1.01324 0.87415 1.00328 1.18804 0.97884 0.94961 0.88504 1.21518 1.01623 1.00606 0.93181 1.20955 0.98615 0.96136 0.98347 1.21073 0.98844 0.97255 0.96816 1.21260 1.00069 0.99733 0.91660 1.18855 0.95246 0.93122 0.93053 1.18277 0.93526 1.04395 0.91672 1.21005 0.94713 1.00388 0.96454 1.20941 0.99367 1.01930 0.92590 1.20726 0.92274 0.92323 0.97275 1.18371 0.97539 0.96888 0.86250 1.21030 1.46999 0.92444 0.94281 0.92499 1.25005 0.95469 0.95954 0.97894 1.69948 1.48506 1.21667 1.13346 0.86607 0.78838 0.83114 0.79189 1.20188 1.21271 1.20175 1.20996 0.96646 1.01741 0.95539 1.20931 0.97945 0.97635 0.92575 0.95523 0.90793 0.91181 0.91105 0.90863 0.95628 0.86615 0.86471 0.86114 0.85539 0.87373 0.86554 0.95403 0.95383 0.92839 0.86609 0.87176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 8.98 60.06 0.54 0.85 16 2 N -0.50 -6.57 3.23 -186.63 -0.60 -7.17 16 3 C 0.03 0.37 9.38 60.07 0.56 0.93 16 4 C 0.09 1.24 4.65 -83.54 -0.39 0.85 16 5 C -0.15 -1.69 8.56 -39.42 -0.34 -2.03 16 6 C -0.12 -1.25 10.03 -39.56 -0.40 -1.65 16 7 C -0.12 -1.29 10.03 -39.60 -0.40 -1.68 16 8 C -0.11 -1.36 9.52 -39.28 -0.37 -1.73 16 9 C 0.00 -0.03 5.49 -104.72 -0.57 -0.60 16 10 C -0.08 -1.33 5.25 -104.91 -0.55 -1.88 16 11 C -0.11 -1.88 9.52 -39.24 -0.37 -2.25 16 12 C -0.13 -2.62 9.68 -39.63 -0.38 -3.00 16 13 C -0.03 -0.58 5.07 -104.56 -0.53 -1.11 16 14 C 0.05 1.21 5.10 -29.03 -0.15 1.06 16 15 C -0.51 -14.47 9.09 -34.44 -0.31 -14.79 16 16 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 17 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 18 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 19 Si 0.89 21.78 29.54 -169.99 -5.02 16.76 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C -0.13 -2.65 9.68 -39.63 -0.38 -3.03 16 24 C -0.07 -1.29 8.72 -39.24 -0.34 -1.63 16 25 H 0.03 0.25 7.12 -51.93 -0.37 -0.12 16 26 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 27 H 0.07 0.77 7.51 -51.93 -0.39 0.38 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.07 0.78 8.12 -51.93 -0.42 0.36 16 30 H 0.03 0.25 7.34 -51.93 -0.38 -0.13 16 31 H 0.12 1.13 7.01 -52.49 -0.37 0.77 16 32 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 34 H 0.13 1.45 8.04 -52.49 -0.42 1.03 16 35 H 0.11 1.64 8.05 -52.48 -0.42 1.22 16 36 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 37 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 38 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.12 2.29 8.06 -52.49 -0.42 1.86 16 41 H 0.11 1.77 6.65 -52.49 -0.35 1.42 16 LS Contribution 342.14 15.07 5.16 5.16 Total: -1.00 -30.61 342.14 -10.26 -40.87 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.04 Total: 0.48 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: -4.49 Total: -30.14 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.13 Total: -33.13 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.61 -10.26 -40.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242185105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.252 kcal (2) G-P(sol) polarization free energy of solvation -30.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds