Wall clock time and date at job start Tue Mar 31 2020 05:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46896 * 111.00290 * 2 1 4 4 C 1.39474 * 111.00066 * 123.95390 * 2 1 3 5 5 C 1.38788 * 120.13463 * 300.27040 * 4 2 1 6 6 C 1.38120 * 120.04168 * 180.27737 * 5 4 2 7 7 C 1.38420 * 120.32655 * 359.72456 * 6 5 4 8 8 C 1.38010 * 120.27761 * 359.97438 * 7 6 5 9 9 C 1.39288 * 119.95294 * 359.97438 * 8 7 6 10 10 C 1.48293 * 120.16085 * 180.02562 * 9 8 7 11 11 C 1.39405 * 120.12315 * 130.00431 * 10 9 8 12 12 C 1.37983 * 119.87413 * 180.02562 * 11 10 9 13 13 C 1.38346 * 120.12356 * 359.97438 * 12 11 10 14 14 C 1.38305 * 120.25710 * 0.02562 * 13 12 11 15 15 C 1.50693 * 119.94039 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.47354 * 269.97559 * 15 14 13 17 17 H 1.08001 * 119.99787 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00198 * 179.97438 * 16 15 14 19 19 N 1.31521 * 120.00276 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99960 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46976 * 60.00358 * 20 18 16 22 22 H 1.48500 * 109.46857 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46975 * 299.99997 * 20 18 16 24 24 C 1.38035 * 120.12419 * 359.97438 * 14 13 12 25 25 H 1.09007 * 109.46899 * 296.05031 * 1 2 3 26 26 H 1.09001 * 109.47074 * 56.04825 * 1 2 3 27 27 H 1.09000 * 109.47663 * 176.04935 * 1 2 3 28 28 H 1.09001 * 109.46984 * 183.95892 * 3 2 1 29 29 H 1.09003 * 109.47047 * 303.94950 * 3 2 1 30 30 H 1.08991 * 109.47503 * 63.95062 * 3 2 1 31 31 H 1.08004 * 119.98120 * 0.02562 * 5 4 2 32 32 H 1.08005 * 119.84347 * 179.74478 * 6 5 4 33 33 H 1.07998 * 119.86169 * 180.02562 * 7 6 5 34 34 H 1.07999 * 120.02392 * 179.97438 * 8 7 6 35 35 H 1.08005 * 120.06297 * 359.74115 * 11 10 9 36 36 H 1.08000 * 119.94002 * 180.02562 * 12 11 10 37 37 H 1.08005 * 119.87401 * 179.97438 * 13 12 11 38 38 H 1.09001 * 109.47528 * 29.98004 * 15 14 13 39 39 H 1.08997 * 109.47468 * 149.97705 * 15 14 13 40 40 H 0.96993 * 119.99945 * 180.02562 * 19 18 16 41 41 H 1.07991 * 120.06257 * 179.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9688 -0.7273 1.0801 5 6 1.6536 -0.3518 2.3785 6 6 2.1543 -1.0699 3.4468 7 6 2.9670 -2.1694 3.2305 8 6 3.2838 -2.5582 1.9447 9 6 2.7844 -1.8431 0.8589 10 6 3.1215 -2.2572 -0.5246 11 6 2.1123 -2.4131 -1.4737 12 6 2.4317 -2.7991 -2.7594 13 6 3.7505 -3.0308 -3.1074 14 6 4.7558 -2.8777 -2.1700 15 6 6.1900 -3.1314 -2.5570 16 6 6.5278 -4.5795 -2.3120 17 1 5.7787 -5.2493 -1.9162 18 6 7.7928 -5.0496 -2.5943 19 7 8.7049 -4.2342 -3.0769 20 14 8.2112 -6.8448 -2.2914 21 1 7.3182 -7.7058 -3.1076 22 1 9.6245 -7.0947 -2.6726 23 1 8.0239 -7.1607 -0.8524 24 6 4.4481 -2.4919 -0.8809 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8525 27 1 -0.3634 -1.0252 -0.0708 28 1 3.0828 1.3431 -0.0710 29 1 1.5899 1.9163 -0.8525 30 1 1.7044 1.8723 0.9232 31 1 1.0198 0.5049 2.5538 32 1 1.9104 -0.7724 4.4560 33 1 3.3541 -2.7257 4.0713 34 1 3.9186 -3.4165 1.7807 35 1 1.0821 -2.2365 -1.2020 36 1 1.6508 -2.9198 -3.4956 37 1 3.9959 -3.3332 -4.1148 38 1 6.3278 -2.8997 -3.6131 39 1 6.8453 -2.4992 -1.9579 40 1 9.5947 -4.5650 -3.2758 41 1 5.2338 -2.3731 -0.1496 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242185378.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:59 Heat of formation + Delta-G solvation = 50.276353 kcal Electronic energy + Delta-G solvation = -21146.650688 eV Core-core repulsion = 18183.898455 eV Total energy + Delta-G solvation = -2962.752233 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.09951 -38.15158 -36.48399 -33.53305 -32.23580 -30.98936 -29.93126 -28.58145 -27.70482 -26.86865 -24.59313 -23.18667 -23.12899 -21.05147 -20.89659 -19.63647 -17.06983 -16.28308 -15.87966 -15.66782 -15.36364 -15.05619 -14.55813 -14.30073 -14.21373 -13.80165 -13.61894 -12.91263 -12.70067 -12.51722 -12.32654 -12.24735 -12.15852 -11.79272 -11.60853 -11.52784 -11.25626 -11.11307 -10.95981 -10.67339 -10.45730 -10.18237 -9.47648 -9.43110 -8.93931 -8.71685 -8.49873 -8.38387 -7.88446 -7.55528 -6.00499 -4.04126 1.19363 1.34862 2.22188 2.33661 3.34107 3.38062 3.41432 3.76988 3.82392 4.43449 4.64813 4.87159 4.91666 5.05066 5.10563 5.17395 5.30422 5.33865 5.39396 5.42305 5.58128 5.66053 5.66496 5.77174 5.84300 5.85328 5.97279 6.06576 6.26270 6.34829 6.35038 6.48203 6.59152 6.74657 6.81648 6.86821 6.92385 7.21877 7.27811 7.33304 7.43641 7.56393 7.83986 7.93131 7.95627 8.37039 9.01059 9.59397 11.09358 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020770 B = 0.004354 C = 0.003916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.752030 B = 6428.960826 C = 7148.417649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.500 5.500 3 C 0.031 3.969 4 C 0.091 3.909 5 C -0.151 4.151 6 C -0.120 4.120 7 C -0.120 4.120 8 C -0.103 4.103 9 C -0.006 4.006 10 C -0.050 4.050 11 C -0.101 4.101 12 C -0.130 4.130 13 C -0.119 4.119 14 C -0.039 4.039 15 C 0.049 3.951 16 C -0.510 4.510 17 H 0.056 0.944 18 C 0.058 3.942 19 N -0.895 5.895 20 Si 0.894 3.106 21 H -0.276 1.276 22 H -0.287 1.287 23 H -0.276 1.276 24 C -0.108 4.108 25 H 0.027 0.973 26 H 0.071 0.929 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.026 0.974 31 H 0.115 0.885 32 H 0.118 0.882 33 H 0.122 0.878 34 H 0.131 0.869 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.028 0.972 39 H 0.027 0.973 40 H 0.262 0.738 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.937 8.890 9.452 20.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.220 5.220 3 C -0.116 4.116 4 C -0.002 4.002 5 C -0.171 4.171 6 C -0.139 4.139 7 C -0.139 4.139 8 C -0.122 4.122 9 C -0.007 4.007 10 C -0.050 4.050 11 C -0.119 4.119 12 C -0.148 4.148 13 C -0.137 4.137 14 C -0.039 4.039 15 C 0.012 3.988 16 C -0.548 4.548 17 H 0.075 0.925 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.722 3.278 21 H -0.202 1.202 22 H -0.213 1.213 23 H -0.202 1.202 24 C -0.126 4.126 25 H 0.045 0.955 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.133 0.867 32 H 0.136 0.864 33 H 0.140 0.860 34 H 0.149 0.851 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.046 0.954 39 H 0.045 0.955 40 H 0.072 0.928 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -15.602 8.693 8.931 19.969 hybrid contribution 0.040 -0.545 0.907 1.059 sum -15.562 8.148 9.837 20.133 Atomic orbital electron populations 1.22452 0.86352 1.02512 1.00474 1.59440 1.07785 1.13818 1.41006 1.22418 1.01421 0.87445 1.00277 1.18749 0.98035 0.94972 0.88493 1.21476 1.01789 1.00698 0.93155 1.20965 0.98486 0.96080 0.98340 1.21102 0.98632 0.97212 0.96905 1.21357 0.99329 0.99865 0.91624 1.18862 0.95451 0.93324 0.93100 1.18452 0.93581 1.01511 0.91469 1.20751 0.97823 1.00596 0.92700 1.20927 0.96196 1.01636 0.96082 1.21113 0.92287 1.00568 0.99737 1.20535 0.98390 0.92630 0.92357 1.18328 0.85985 0.97113 0.97359 1.21038 0.96702 0.94050 1.43059 0.92546 1.25004 0.96352 0.97745 0.95198 1.69951 1.04139 1.35040 1.44284 0.86617 0.77275 0.85159 0.78754 1.20175 1.21264 1.20194 1.21066 0.94426 1.00505 0.96610 0.95491 0.90987 0.91236 0.90997 0.91029 0.95559 0.86657 0.86444 0.85973 0.85139 0.87313 0.87270 0.86728 0.95414 0.95485 0.92841 0.86754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.00 60.06 0.54 0.83 16 2 N -0.50 -6.31 3.26 -186.62 -0.61 -6.92 16 3 C 0.03 0.34 9.38 60.06 0.56 0.91 16 4 C 0.09 1.25 4.65 -83.53 -0.39 0.86 16 5 C -0.15 -1.78 8.56 -39.42 -0.34 -2.12 16 6 C -0.12 -1.34 10.03 -39.56 -0.40 -1.73 16 7 C -0.12 -1.45 10.03 -39.60 -0.40 -1.84 16 8 C -0.10 -1.49 9.51 -39.27 -0.37 -1.86 16 9 C -0.01 -0.10 5.49 -104.72 -0.57 -0.68 16 10 C -0.05 -0.89 5.25 -104.91 -0.55 -1.44 16 11 C -0.10 -1.70 8.72 -39.24 -0.34 -2.04 16 12 C -0.13 -2.26 10.03 -39.63 -0.40 -2.66 16 13 C -0.12 -2.39 9.69 -39.52 -0.38 -2.78 16 14 C -0.04 -0.87 5.06 -104.67 -0.53 -1.40 16 15 C 0.05 1.28 5.10 -29.04 -0.15 1.14 16 16 C -0.51 -14.44 9.09 -34.44 -0.31 -14.75 16 17 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 19 N -0.90 -26.66 13.29 55.43 0.74 -25.93 16 20 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 C -0.11 -2.20 9.16 -39.24 -0.36 -2.56 16 25 H 0.03 0.24 7.11 -51.92 -0.37 -0.13 16 26 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 27 H 0.07 0.71 7.50 -51.93 -0.39 0.32 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.07 0.68 8.12 -51.93 -0.42 0.26 16 30 H 0.03 0.25 7.36 -51.93 -0.38 -0.13 16 31 H 0.12 1.15 7.02 -52.48 -0.37 0.78 16 32 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 33 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.13 1.89 8.04 -52.49 -0.42 1.47 16 35 H 0.11 1.64 6.69 -52.48 -0.35 1.29 16 36 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 37 H 0.11 2.24 8.06 -52.48 -0.42 1.82 16 38 H 0.03 0.76 8.08 -51.93 -0.42 0.34 16 39 H 0.03 0.74 8.08 -51.93 -0.42 0.32 16 40 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 41 H 0.11 2.33 8.04 -52.49 -0.42 1.91 16 LS Contribution 342.21 15.07 5.16 5.16 Total: -1.00 -30.52 342.21 -10.26 -40.79 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.04 Total: 0.80 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: -4.49 Total: -30.57 kcal Atomic # 7 Polarization: -32.97 SS G_CDS: 0.13 Total: -32.85 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.52 -10.26 -40.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242185378.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.063 kcal (2) G-P(sol) polarization free energy of solvation -30.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds