Wall clock time and date at job start Tue Mar 31 2020 05:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37713 * 119.96446 * 2 1 4 4 C 1.39730 * 119.93118 * 180.02562 * 3 2 1 5 5 C 1.47833 * 120.06544 * 180.02562 * 4 3 2 6 6 C 1.40026 * 119.89117 * 359.69870 * 5 4 3 7 7 C 1.36198 * 120.11260 * 179.76075 * 6 5 4 8 8 C 1.40958 * 119.88794 * 0.51420 * 7 6 5 9 9 C 1.40979 * 120.11521 * 179.76313 * 8 7 6 10 10 H 1.07994 * 120.00030 * 204.70330 * 9 8 7 11 11 C 1.39964 * 119.99825 * 24.69269 * 9 8 7 12 12 N 1.30826 * 119.99626 * 17.98987 * 11 9 8 13 13 Si 1.86792 * 119.99945 * 197.98774 * 11 9 8 14 14 H 1.48493 * 109.47465 * 60.00244 * 13 11 9 15 15 H 1.48508 * 109.47252 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47072 * 300.00194 * 13 11 9 17 17 C 1.40960 * 119.77459 * 359.74400 * 8 7 6 18 18 C 1.36200 * 119.88800 * 359.97438 * 17 8 7 19 19 C 1.39760 * 119.86551 * 359.97438 * 4 3 2 20 20 C 1.37679 * 119.93207 * 0.02562 * 19 4 3 21 21 C 1.39154 * 119.96749 * 180.25933 * 2 1 3 22 22 N 1.39322 * 119.93312 * 359.97438 * 21 2 1 23 23 C 1.46892 * 111.00097 * 120.25745 * 22 21 2 24 24 C 1.46904 * 111.00053 * 244.21090 * 22 21 2 25 25 H 1.09001 * 109.47290 * 89.99581 * 1 2 3 26 26 H 1.08997 * 109.46689 * 209.99957 * 1 2 3 27 27 H 1.09005 * 109.47094 * 329.99430 * 1 2 3 28 28 H 1.08003 * 120.03481 * 0.02562 * 3 2 1 29 29 H 1.08004 * 119.93993 * 0.02562 * 6 5 4 30 30 H 1.08005 * 120.05603 * 180.25708 * 7 6 5 31 31 H 0.97007 * 119.99924 * 179.97438 * 12 11 9 32 32 H 1.08002 * 120.05989 * 179.97438 * 17 8 7 33 33 H 1.07998 * 119.94513 * 180.02562 * 18 17 8 34 34 H 1.08000 * 120.03549 * 179.97438 * 19 4 3 35 35 H 1.07999 * 119.96499 * 179.97438 * 20 19 4 36 36 H 1.08995 * 109.47458 * 59.99890 * 23 22 21 37 37 H 1.09002 * 109.47107 * 180.02562 * 23 22 21 38 38 H 1.09000 * 109.47469 * 299.99501 * 23 22 21 39 39 H 1.09003 * 109.46551 * 59.99477 * 24 22 21 40 40 H 1.08990 * 109.47348 * 179.97438 * 24 22 21 41 41 H 1.09002 * 109.46800 * 300.00160 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1949 1.1931 0.0000 4 6 3.5922 1.1922 -0.0005 5 6 4.3335 2.4712 0.0000 6 6 3.6332 3.6838 -0.0053 7 6 4.3116 4.8647 0.0002 8 6 5.7212 4.8650 0.0001 9 6 6.4283 6.0847 0.0007 10 1 7.4342 6.1258 -0.3901 11 6 5.8265 7.2422 0.5076 12 7 4.7802 7.1477 1.2872 13 14 6.5174 8.9219 0.0710 14 1 6.4709 9.1088 -1.4013 15 1 5.7068 9.9772 0.7303 16 1 7.9241 9.0150 0.5376 17 6 6.4215 3.6417 0.0000 18 6 5.7338 2.4660 0.0004 19 6 4.2874 -0.0202 -0.0005 20 6 3.5941 -1.2096 -0.0005 21 6 2.2021 -1.2055 -0.0055 22 7 1.5034 -2.4108 -0.0104 23 6 1.8368 -3.2077 -1.1985 24 6 1.7561 -3.1709 1.2211 25 1 -0.3634 0.0001 -1.0277 26 1 -0.3632 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5139 28 1 1.6548 2.1284 0.0004 29 1 2.5532 3.6824 -0.0093 30 1 3.7705 5.7995 0.0002 31 1 4.3633 7.9499 1.6389 32 1 7.5015 3.6365 -0.0004 33 1 6.2693 1.5282 0.0007 34 1 5.3674 -0.0240 -0.0014 35 1 4.1308 -2.1468 -0.0010 36 1 2.9052 -3.4231 -1.2035 37 1 1.2773 -4.1430 -1.1774 38 1 1.5747 -2.6483 -2.0965 39 1 1.4354 -2.5844 2.0822 40 1 1.1984 -4.1068 1.1914 41 1 2.8217 -3.3849 1.3038 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242241551.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:31 Heat of formation + Delta-G solvation = 41.747846 kcal Electronic energy + Delta-G solvation = -20743.885970 eV Core-core repulsion = 17780.763914 eV Total energy + Delta-G solvation = -2963.122057 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.68385 -37.81235 -36.09080 -33.90883 -32.40176 -30.88814 -29.56600 -28.48911 -27.57960 -26.51492 -25.54701 -23.61899 -21.91455 -21.29548 -20.16075 -19.34306 -17.55291 -16.62334 -15.61574 -15.44687 -15.09780 -14.97068 -14.39037 -13.82930 -13.41795 -13.28724 -13.14542 -12.90501 -12.78292 -12.44586 -12.39699 -12.00841 -11.98168 -11.84272 -11.71254 -11.67121 -11.33673 -11.19588 -10.96074 -10.76532 -10.58335 -10.45441 -9.78911 -9.43842 -9.30946 -8.49848 -8.39104 -8.23082 -7.65434 -7.06504 -6.90017 -4.46176 1.51592 1.89707 2.74892 2.96781 2.99125 3.06094 3.15179 3.78297 4.03273 4.18704 4.65245 5.14529 5.23224 5.29089 5.31239 5.45330 5.49135 5.57105 5.62748 5.76345 5.81901 5.83071 5.94745 5.96772 6.05853 6.11902 6.14357 6.22705 6.40011 6.63572 6.78873 6.84587 6.89869 6.93406 6.94410 7.02505 7.15435 7.29738 7.34264 7.49744 7.69230 7.86877 7.90802 8.06235 8.12828 8.46615 8.69104 8.82045 9.95847 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.039905 B = 0.003306 C = 0.003138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.497980 B = 8467.768026 C = 8921.879068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.050 4.050 3 C -0.144 4.144 4 C 0.030 3.970 5 C -0.208 4.208 6 C -0.073 4.073 7 C -0.173 4.173 8 C 0.120 3.880 9 C -0.446 4.446 10 H 0.082 0.918 11 C 0.074 3.926 12 N -0.777 5.777 13 Si 0.913 3.087 14 H -0.261 1.261 15 H -0.276 1.276 16 H -0.263 1.263 17 C -0.232 4.232 18 C -0.062 4.062 19 C -0.145 4.145 20 C -0.132 4.132 21 C 0.032 3.968 22 N -0.501 5.501 23 C 0.030 3.970 24 C 0.029 3.971 25 H 0.062 0.938 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.122 0.878 29 H 0.093 0.907 30 H 0.119 0.881 31 H 0.286 0.714 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.107 0.893 36 H 0.027 0.973 37 H 0.065 0.935 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.345 -11.615 -1.601 12.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.051 4.051 3 C -0.162 4.162 4 C 0.030 3.970 5 C -0.209 4.209 6 C -0.092 4.092 7 C -0.192 4.192 8 C 0.117 3.883 9 C -0.474 4.474 10 H 0.100 0.900 11 C -0.147 4.147 12 N -0.400 5.400 13 Si 0.736 3.264 14 H -0.186 1.186 15 H -0.201 1.201 16 H -0.188 1.188 17 C -0.251 4.251 18 C -0.080 4.080 19 C -0.163 4.163 20 C -0.152 4.152 21 C -0.062 4.062 22 N -0.222 5.222 23 C -0.117 4.117 24 C -0.118 4.118 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.140 0.860 29 H 0.111 0.889 30 H 0.136 0.864 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.135 0.865 35 H 0.125 0.875 36 H 0.045 0.955 37 H 0.084 0.916 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -6.025 -11.372 -1.458 12.952 hybrid contribution 1.287 0.542 -0.019 1.397 sum -4.738 -10.830 -1.477 11.913 Atomic orbital electron populations 1.20597 0.91421 1.02074 1.01677 1.19586 0.95717 0.91378 0.98457 1.21049 0.93634 0.97011 1.04510 1.19035 0.92441 0.92875 0.92665 1.18082 0.92512 0.90652 1.19694 1.20546 0.97428 0.92422 0.98765 1.20988 0.94444 0.96718 1.07059 1.17735 0.92169 0.92117 0.86288 1.19684 1.01272 0.92485 1.33973 0.89995 1.26036 0.94198 1.01899 0.92547 1.69824 1.17458 1.32159 1.20577 0.86285 0.79948 0.79978 0.80160 1.18563 1.20097 1.18774 1.20679 0.97845 0.92549 1.14027 1.20408 0.93035 0.96541 0.98000 1.21007 0.99482 0.91541 1.04303 1.21301 0.94329 0.97690 1.01885 1.18338 0.89956 0.90038 1.07832 1.59400 1.56809 1.03349 1.02605 1.22402 0.98838 0.97398 0.93087 1.22419 0.99249 0.97828 0.92315 0.91975 0.90993 0.92545 0.86029 0.88928 0.86366 0.90334 0.88765 0.89008 0.86526 0.87505 0.95460 0.91611 0.91379 0.91357 0.91606 0.95471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 9.76 36.01 0.35 -1.00 16 2 C -0.05 -0.82 5.89 -104.47 -0.62 -1.44 16 3 C -0.14 -2.61 9.06 -39.22 -0.36 -2.97 16 4 C 0.03 0.59 5.88 -104.85 -0.62 -0.02 16 5 C -0.21 -4.67 5.90 -104.63 -0.62 -5.29 16 6 C -0.07 -1.70 9.36 -39.65 -0.37 -2.07 16 7 C -0.17 -4.38 8.63 -39.29 -0.34 -4.72 16 8 C 0.12 3.10 5.57 -106.80 -0.60 2.51 16 9 C -0.45 -11.34 9.03 -37.90 -0.34 -11.68 16 10 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 11 C 0.07 1.76 5.13 -17.33 -0.09 1.67 16 12 N -0.78 -19.19 10.96 55.55 0.61 -18.59 16 13 Si 0.91 17.72 29.60 -169.99 -5.03 12.69 16 14 H -0.26 -5.05 7.11 56.52 0.40 -4.64 16 15 H -0.28 -5.22 7.11 56.52 0.40 -4.81 16 16 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 17 C -0.23 -5.57 9.73 -39.28 -0.38 -5.95 16 18 C -0.06 -1.38 9.36 -39.64 -0.37 -1.75 16 19 C -0.14 -2.59 9.42 -39.22 -0.37 -2.96 16 20 C -0.13 -2.10 8.54 -39.43 -0.34 -2.44 16 21 C 0.03 0.50 4.71 -83.76 -0.39 0.10 16 22 N -0.50 -6.53 3.92 -186.81 -0.73 -7.26 16 23 C 0.03 0.33 9.34 60.06 0.56 0.89 16 24 C 0.03 0.32 9.38 60.07 0.56 0.89 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.07 0.92 7.46 -51.93 -0.39 0.54 16 27 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 28 H 0.12 2.14 6.17 -52.48 -0.32 1.81 16 29 H 0.09 1.94 6.17 -52.48 -0.32 1.62 16 30 H 0.12 3.06 6.16 -52.48 -0.32 2.73 16 31 H 0.29 6.38 8.30 -40.82 -0.34 6.05 16 32 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 33 H 0.09 1.81 6.17 -52.49 -0.32 1.49 16 34 H 0.12 1.98 6.17 -52.49 -0.32 1.65 16 35 H 0.11 1.49 6.99 -52.49 -0.37 1.13 16 36 H 0.03 0.30 7.10 -51.93 -0.37 -0.07 16 37 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.60 8.12 -51.93 -0.42 0.17 16 41 H 0.03 0.30 7.32 -51.93 -0.38 -0.08 16 LS Contribution 333.20 15.07 5.02 5.02 Total: -1.00 -26.58 333.20 -10.08 -36.65 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -5.63 Total: 7.72 kcal Atomic # 6 Polarization: -31.91 SS G_CDS: -4.32 Total: -36.23 kcal Atomic # 7 Polarization: -25.73 SS G_CDS: -0.12 Total: -25.85 kcal Atomic # 14 Polarization: 17.72 SS G_CDS: -5.03 Total: 12.69 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -26.58 -10.08 -36.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242241551.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.402 kcal (2) G-P(sol) polarization free energy of solvation -26.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds