Wall clock time and date at job start Tue Mar 31 2020 05:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37884 * 119.97486 * 2 1 4 4 C 1.39381 * 119.94946 * 180.29530 * 3 2 1 5 5 C 1.48359 * 120.04659 * 179.68278 * 4 3 2 6 6 C 1.39764 * 119.99921 * 359.73667 * 5 4 3 7 7 C 1.38383 * 120.37360 * 179.76657 * 6 5 4 8 8 C 1.37721 * 120.38377 * 0.51911 * 7 6 5 9 9 C 1.40762 * 119.99328 * 359.73812 * 8 7 6 10 10 C 1.41423 * 120.18749 * 180.02562 * 9 8 7 11 11 H 1.07994 * 120.00395 * 154.80154 * 10 9 8 12 12 C 1.39928 * 119.99739 * 334.79411 * 10 9 8 13 13 N 1.30832 * 120.00071 * 342.73938 * 12 10 9 14 14 Si 1.86800 * 120.00079 * 162.74386 * 12 10 9 15 15 H 1.48504 * 109.46760 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47204 * 119.99789 * 14 12 10 17 17 H 1.48498 * 109.47090 * 239.99884 * 14 12 10 18 18 C 1.38750 * 120.00539 * 180.02562 * 5 4 3 19 19 C 1.39421 * 119.91278 * 359.69396 * 4 3 2 20 20 C 1.37836 * 119.95117 * 0.02562 * 19 4 3 21 21 C 1.39001 * 119.97812 * 179.72002 * 2 1 3 22 22 N 1.39557 * 119.95358 * 0.02562 * 21 2 1 23 23 C 1.46901 * 111.00065 * 239.72604 * 22 21 2 24 24 C 1.46903 * 110.99756 * 115.77433 * 22 21 2 25 25 H 1.08997 * 109.47066 * 270.27847 * 1 2 3 26 26 H 1.09005 * 109.46820 * 30.27792 * 1 2 3 27 27 H 1.08994 * 109.46915 * 150.27811 * 1 2 3 28 28 H 1.07995 * 120.02554 * 359.97438 * 3 2 1 29 29 H 1.08001 * 119.81117 * 0.02562 * 6 5 4 30 30 H 1.08000 * 119.80802 * 180.25745 * 7 6 5 31 31 H 1.08000 * 120.00524 * 179.72425 * 8 7 6 32 32 H 0.97001 * 119.99980 * 180.02562 * 13 12 10 33 33 H 1.07998 * 120.18751 * 359.97438 * 18 5 4 34 34 H 1.07994 * 120.02598 * 180.02562 * 19 4 3 35 35 H 1.08003 * 119.97190 * 179.97438 * 20 19 4 36 36 H 1.08998 * 109.46914 * 60.00434 * 23 22 21 37 37 H 1.08991 * 109.47173 * 300.00367 * 23 22 21 38 38 H 1.09000 * 109.46720 * 179.97438 * 23 22 21 39 39 H 1.08994 * 109.46834 * 183.95538 * 24 22 21 40 40 H 1.08999 * 109.46763 * 303.95553 * 24 22 21 41 41 H 1.08996 * 109.46905 * 63.95237 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1944 0.0000 4 6 3.5897 1.1938 -0.0062 5 6 4.3331 2.4777 -0.0133 6 6 3.6358 3.6889 -0.0194 7 6 4.3213 4.8910 -0.0212 8 6 5.6984 4.9075 -0.0278 9 6 6.4167 3.6970 -0.0272 10 6 7.8308 3.7091 -0.0335 11 1 8.3799 2.8688 0.3649 12 6 8.5187 4.8100 -0.5560 13 7 7.8979 5.6612 -1.3317 14 14 10.3233 5.0642 -0.1460 15 1 10.7875 3.9700 0.7442 16 1 11.1213 5.0564 -1.3984 17 1 10.4955 6.3687 0.5424 18 6 5.7206 2.4761 -0.0201 19 6 4.2845 -0.0150 -0.0060 20 6 3.5920 -1.2067 -0.0001 21 6 2.2016 -1.2040 0.0059 22 7 1.5024 -2.4118 0.0112 23 6 1.8365 -3.2083 1.1995 24 6 1.7552 -3.1719 -1.2202 25 1 -0.3633 0.0050 1.0276 26 1 -0.3633 0.8875 -0.5182 27 1 -0.3633 -0.8924 -0.5095 28 1 1.6560 2.1297 -0.0004 29 1 2.5557 3.6867 -0.0184 30 1 3.7732 5.8216 -0.0216 31 1 6.2272 5.8492 -0.0337 32 1 8.3748 6.4241 -1.6943 33 1 6.2626 1.5419 -0.0197 34 1 5.3644 -0.0176 -0.0104 35 1 4.1298 -2.1433 -0.0004 36 1 1.5743 -2.6487 2.0974 37 1 2.9050 -3.4230 1.2043 38 1 1.2775 -4.1438 1.1787 39 1 1.1446 -4.0747 -1.2216 40 1 1.4995 -2.5589 -2.0844 41 1 2.8091 -3.4459 -1.2680 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242241684.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:33 Heat of formation + Delta-G solvation = 42.934003 kcal Electronic energy + Delta-G solvation = -20809.631279 eV Core-core repulsion = 17846.560658 eV Total energy + Delta-G solvation = -2963.070621 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.84219 -37.76505 -36.13626 -33.73749 -32.57303 -30.81191 -29.90777 -27.87579 -27.65244 -26.66290 -25.23713 -24.19225 -21.82983 -21.46685 -20.18022 -19.43224 -17.28154 -16.68897 -15.59156 -15.40735 -15.06572 -14.81468 -14.76805 -13.87570 -13.48741 -13.28577 -13.25444 -13.06609 -12.86953 -12.50055 -12.39126 -12.04952 -12.01304 -11.87373 -11.78267 -11.55435 -11.25973 -11.14440 -10.97082 -10.82323 -10.52158 -10.39727 -9.72082 -9.40752 -9.23600 -8.63793 -8.50141 -8.35037 -7.52389 -6.95119 -6.77548 -4.39745 1.38134 1.75298 2.76017 3.00569 3.06267 3.11372 3.18898 3.91171 3.91580 4.17666 4.67365 5.06567 5.13113 5.18013 5.24529 5.38284 5.39641 5.42251 5.66901 5.68459 5.74847 5.77179 5.80870 5.87590 5.93543 5.98716 6.10893 6.27430 6.43265 6.49578 6.69491 6.73693 6.83448 6.89259 6.91331 7.00745 7.13114 7.22028 7.34595 7.51100 7.61724 7.82069 7.98072 8.02398 8.22990 8.58119 8.85370 8.90784 10.17112 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028053 B = 0.003644 C = 0.003322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 997.871349 B = 7682.098537 C = 8425.745233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.062 4.062 3 C -0.119 4.119 4 C -0.006 4.006 5 C -0.044 4.044 6 C -0.218 4.218 7 C -0.109 4.109 8 C -0.153 4.153 9 C 0.106 3.894 10 C -0.465 4.465 11 H 0.078 0.922 12 C 0.076 3.924 13 N -0.796 5.796 14 Si 0.907 3.093 15 H -0.260 1.260 16 H -0.275 1.275 17 H -0.272 1.272 18 C -0.201 4.201 19 C -0.116 4.116 20 C -0.142 4.142 21 C 0.056 3.944 22 N -0.504 5.504 23 C 0.029 3.971 24 C 0.028 3.972 25 H 0.063 0.937 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.126 0.874 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.119 0.881 32 H 0.280 0.720 33 H 0.097 0.903 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.068 0.932 37 H 0.029 0.971 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.239 -11.170 1.783 14.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.063 4.063 3 C -0.137 4.137 4 C -0.006 4.006 5 C -0.044 4.044 6 C -0.237 4.237 7 C -0.127 4.127 8 C -0.173 4.173 9 C 0.104 3.896 10 C -0.495 4.495 11 H 0.096 0.904 12 C -0.141 4.141 13 N -0.421 5.421 14 Si 0.731 3.269 15 H -0.184 1.184 16 H -0.200 1.200 17 H -0.197 1.197 18 C -0.221 4.221 19 C -0.135 4.135 20 C -0.162 4.162 21 C -0.037 4.037 22 N -0.225 5.225 23 C -0.118 4.118 24 C -0.119 4.119 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.091 0.909 28 H 0.144 0.856 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.137 0.863 32 H 0.091 0.909 33 H 0.115 0.885 34 H 0.143 0.857 35 H 0.130 0.870 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -9.707 -10.885 1.651 14.677 hybrid contribution 1.838 0.003 0.005 1.838 sum -7.869 -10.881 1.656 13.530 Atomic orbital electron populations 1.20596 0.91099 1.02236 1.01806 1.19639 0.95997 0.91302 0.99353 1.21124 0.93590 0.97246 1.01747 1.19171 0.92698 0.93252 0.95452 1.18331 0.93083 0.90368 1.02612 1.20449 0.97119 0.91998 1.14163 1.20640 0.94895 0.95826 1.01365 1.21435 0.92321 0.98926 1.04572 1.17549 0.93367 0.90586 0.88105 1.19578 0.91358 1.02757 1.35800 0.90415 1.25885 1.00811 0.94843 0.92578 1.69825 1.38583 1.11481 1.22259 0.86283 0.82022 0.79312 0.79241 1.18415 1.20006 1.19704 1.21108 0.91985 0.97227 1.11749 1.21163 1.00193 0.91359 1.00784 1.21388 0.94316 0.97986 1.02499 1.18474 0.90069 0.90257 1.04930 1.59526 1.56708 1.03341 1.02890 1.22415 0.99040 0.97486 0.92877 1.22427 0.99433 0.97951 0.92070 0.91859 0.92446 0.90855 0.85589 0.88974 0.89123 0.86337 0.90924 0.88529 0.85696 0.87001 0.91275 0.95248 0.91392 0.91357 0.91262 0.95310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 9.76 36.01 0.35 -0.89 16 2 C -0.06 -0.95 5.89 -104.47 -0.62 -1.56 16 3 C -0.12 -2.04 9.07 -39.29 -0.36 -2.40 16 4 C -0.01 -0.11 5.88 -104.87 -0.62 -0.73 16 5 C -0.04 -0.99 5.87 -104.97 -0.62 -1.61 16 6 C -0.22 -4.85 9.44 -38.96 -0.37 -5.21 16 7 C -0.11 -2.53 10.01 -39.72 -0.40 -2.93 16 8 C -0.15 -3.95 8.69 -38.82 -0.34 -4.29 16 9 C 0.11 2.81 5.56 -106.86 -0.59 2.22 16 10 C -0.47 -12.26 9.05 -37.74 -0.34 -12.61 16 11 H 0.08 1.97 7.90 -52.49 -0.41 1.56 16 12 C 0.08 1.90 5.14 -17.34 -0.09 1.81 16 13 N -0.80 -20.48 10.97 55.55 0.61 -19.87 16 14 Si 0.91 18.56 29.59 -169.99 -5.03 13.53 16 15 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 16 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 17 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 18 C -0.20 -4.91 9.17 -38.53 -0.35 -5.27 16 19 C -0.12 -2.07 9.41 -39.29 -0.37 -2.44 16 20 C -0.14 -2.19 8.59 -39.43 -0.34 -2.53 16 21 C 0.06 0.83 4.70 -83.76 -0.39 0.44 16 22 N -0.50 -6.20 3.92 -186.83 -0.73 -6.93 16 23 C 0.03 0.30 9.34 60.07 0.56 0.86 16 24 C 0.03 0.30 9.33 60.07 0.56 0.86 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 27 H 0.07 0.87 7.45 -51.93 -0.39 0.48 16 28 H 0.13 2.05 6.18 -52.49 -0.32 1.73 16 29 H 0.09 1.80 6.17 -52.49 -0.32 1.48 16 30 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.12 3.14 6.18 -52.49 -0.32 2.82 16 32 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 33 H 0.10 2.21 6.18 -52.49 -0.32 1.89 16 34 H 0.13 2.20 6.19 -52.49 -0.32 1.88 16 35 H 0.11 1.51 7.03 -52.48 -0.37 1.15 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.03 0.31 7.11 -51.93 -0.37 -0.06 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 41 H 0.03 0.30 7.46 -51.93 -0.39 -0.09 16 LS Contribution 333.67 15.07 5.03 5.03 Total: -1.00 -27.56 333.67 -10.08 -37.64 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -5.64 Total: 6.89 kcal Atomic # 6 Polarization: -31.96 SS G_CDS: -4.31 Total: -36.28 kcal Atomic # 7 Polarization: -26.68 SS G_CDS: -0.12 Total: -26.80 kcal Atomic # 14 Polarization: 18.56 SS G_CDS: -5.03 Total: 13.53 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.56 -10.08 -37.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242241684.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.570 kcal (2) G-P(sol) polarization free energy of solvation -27.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds