Wall clock time and date at job start Tue Mar 31 2020 05:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.37696 * 119.96568 * 2 1 4 4 C 1.39766 * 119.92801 * 180.22742 * 3 2 1 5 5 C 1.47728 * 120.07200 * 179.74709 * 4 3 2 6 6 C 1.39273 * 120.34132 * 310.00212 * 5 4 3 7 7 C 1.38000 * 119.97324 * 179.97438 * 6 5 4 8 8 C 1.38983 * 120.68981 * 0.02562 * 7 6 5 9 9 C 1.36394 * 120.70382 * 359.97438 * 8 7 6 10 10 C 1.40769 * 119.99084 * 359.74786 * 9 8 7 11 11 C 1.40831 * 120.33811 * 180.26826 * 10 9 8 12 12 H 1.08000 * 120.00343 * 154.04121 * 11 10 9 13 13 C 1.40033 * 119.99992 * 334.05360 * 11 10 9 14 14 N 1.30808 * 119.99696 * 341.88249 * 13 11 10 15 15 Si 1.86799 * 120.00102 * 161.89030 * 13 11 10 16 16 H 1.48499 * 109.47023 * 59.99676 * 15 13 11 17 17 H 1.48499 * 109.47085 * 179.97438 * 15 13 11 18 18 H 1.48496 * 109.46913 * 299.99462 * 15 13 11 19 19 C 1.39812 * 119.85617 * 359.49271 * 4 3 2 20 20 C 1.37660 * 119.92213 * 0.48848 * 19 4 3 21 21 C 1.39170 * 119.96281 * 179.97438 * 2 1 3 22 22 N 1.39321 * 119.92515 * 0.02701 * 21 2 1 23 23 C 1.46897 * 111.00103 * 119.99875 * 22 21 2 24 24 C 1.46908 * 110.99716 * 243.95141 * 22 21 2 25 25 H 1.09005 * 109.46575 * 90.00428 * 1 2 3 26 26 H 1.09003 * 109.46911 * 209.99742 * 1 2 3 27 27 H 1.08998 * 109.47221 * 330.00370 * 1 2 3 28 28 H 1.08007 * 120.03231 * 359.95068 * 3 2 1 29 29 H 1.07997 * 120.01538 * 359.97438 * 6 5 4 30 30 H 1.08003 * 119.65804 * 179.97438 * 7 6 5 31 31 H 1.07999 * 119.65013 * 179.97438 * 8 7 6 32 32 H 1.07998 * 120.00509 * 179.97438 * 9 8 7 33 33 H 0.96998 * 119.99556 * 180.02562 * 14 13 11 34 34 H 1.08002 * 120.03374 * 180.27050 * 19 4 3 35 35 H 1.08007 * 119.95968 * 179.76729 * 20 19 4 36 36 H 1.09010 * 109.47054 * 59.99586 * 23 22 21 37 37 H 1.08995 * 109.47349 * 179.97438 * 23 22 21 38 38 H 1.08997 * 109.47407 * 299.99795 * 23 22 21 39 39 H 1.09001 * 109.46950 * 60.00276 * 24 22 21 40 40 H 1.08995 * 109.46597 * 180.02562 * 24 22 21 41 41 H 1.08998 * 109.46627 * 300.00232 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1948 1.1929 0.0000 4 6 3.5925 1.1920 -0.0048 5 6 4.3336 2.4699 -0.0105 6 6 4.0149 3.4639 -0.9325 7 6 4.7118 4.6550 -0.9307 8 6 5.7341 4.8774 -0.0157 9 6 6.0693 3.9233 0.8995 10 6 5.3736 2.6998 0.9274 11 6 5.7099 1.7117 1.8729 12 1 4.9697 0.9909 2.1874 13 6 7.0041 1.6640 2.4057 14 7 7.9854 2.2774 1.7958 15 14 7.3292 0.7244 3.9871 16 1 6.9661 -0.7031 3.7982 17 1 8.7688 0.8264 4.3365 18 1 6.5111 1.3024 5.0833 19 6 4.2877 -0.0210 0.0011 20 6 3.5941 -1.2101 0.0015 21 6 2.2021 -1.2057 0.0005 22 7 1.5032 -2.4109 0.0005 23 6 1.8327 -3.2105 -1.1869 24 6 1.7596 -3.1682 1.2330 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3633 0.8900 0.5138 28 1 1.6548 2.1282 -0.0008 29 1 3.2228 3.3026 -1.6487 30 1 4.4607 5.4222 -1.6483 31 1 6.2687 5.8156 -0.0295 32 1 6.8658 4.1078 1.6050 33 1 8.8819 2.2440 2.1646 34 1 5.3678 -0.0250 0.0019 35 1 4.1306 -2.1475 0.0023 36 1 2.9012 -3.4261 -1.1947 37 1 1.2738 -4.1460 -1.1615 38 1 1.5680 -2.6531 -2.0853 39 1 1.4417 -2.5798 2.0937 40 1 1.2023 -4.1045 1.2066 41 1 2.8254 -3.3821 1.3128 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242242242.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:37 Heat of formation + Delta-G solvation = 42.012301 kcal Electronic energy + Delta-G solvation = -21521.910764 eV Core-core repulsion = 18558.800175 eV Total energy + Delta-G solvation = -2963.110589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -39.54165 -37.72904 -35.83981 -33.76974 -32.37462 -30.75451 -29.66887 -27.88242 -27.46931 -26.35038 -25.35553 -23.94039 -21.41770 -21.06717 -20.58858 -19.09782 -17.34343 -16.35601 -15.56847 -15.33052 -14.96770 -14.85255 -14.24936 -13.75032 -13.46316 -13.35999 -12.98848 -12.90405 -12.62396 -12.42629 -12.31294 -11.90065 -11.83162 -11.67719 -11.61338 -11.35080 -11.18370 -11.06976 -10.90072 -10.63670 -10.57032 -10.44265 -9.65564 -9.44444 -9.24516 -8.28972 -8.21188 -7.95483 -7.45813 -7.15305 -6.83154 -4.40932 1.80357 2.10632 2.75290 3.00093 3.01309 3.04592 3.20063 3.85927 4.14224 4.41796 4.56449 5.26082 5.40733 5.43432 5.46007 5.55656 5.60187 5.66604 5.74409 5.91336 5.94902 6.01570 6.04654 6.14004 6.18891 6.24545 6.27768 6.37004 6.49022 6.61049 6.80797 6.97956 7.04120 7.08637 7.12981 7.17217 7.26712 7.42186 7.49476 7.53497 7.81303 7.92147 8.01030 8.05774 8.20836 8.54250 8.78726 8.88941 10.06652 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014517 B = 0.006329 C = 0.004778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.274663 B = 4422.819913 C = 5858.592505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.067 4.067 3 C -0.129 4.129 4 C 0.027 3.973 5 C -0.190 4.190 6 C -0.070 4.070 7 C -0.244 4.244 8 C -0.101 4.101 9 C -0.160 4.160 10 C 0.131 3.869 11 C -0.450 4.450 12 H 0.083 0.917 13 C 0.078 3.922 14 N -0.786 5.786 15 Si 0.903 3.097 16 H -0.264 1.264 17 H -0.278 1.278 18 H -0.262 1.262 19 C -0.094 4.094 20 C -0.149 4.149 21 C 0.048 3.952 22 N -0.503 5.503 23 C 0.030 3.970 24 C 0.029 3.971 25 H 0.059 0.941 26 H 0.070 0.930 27 H 0.054 0.946 28 H 0.117 0.883 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.283 0.717 34 H 0.128 0.872 35 H 0.107 0.893 36 H 0.028 0.972 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.708 -7.043 -1.488 10.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.068 4.068 3 C -0.148 4.148 4 C 0.027 3.973 5 C -0.192 4.192 6 C -0.088 4.088 7 C -0.264 4.264 8 C -0.119 4.119 9 C -0.179 4.179 10 C 0.129 3.871 11 C -0.479 4.479 12 H 0.101 0.899 13 C -0.141 4.141 14 N -0.411 5.411 15 Si 0.727 3.273 16 H -0.189 1.189 17 H -0.203 1.203 18 H -0.187 1.187 19 C -0.113 4.113 20 C -0.169 4.169 21 C -0.045 4.045 22 N -0.223 5.223 23 C -0.117 4.117 24 C -0.119 4.119 25 H 0.078 0.922 26 H 0.089 0.911 27 H 0.073 0.927 28 H 0.135 0.865 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.134 0.866 33 H 0.094 0.906 34 H 0.146 0.854 35 H 0.125 0.875 36 H 0.046 0.954 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -7.950 -6.932 -1.489 10.652 hybrid contribution 1.339 -0.591 0.710 1.626 sum -6.611 -7.522 -0.779 10.045 Atomic orbital electron populations 1.20558 0.91577 1.01914 1.01411 1.19525 0.95567 0.91416 1.00275 1.21119 0.93681 0.96695 1.03262 1.18858 0.91756 0.93102 0.93609 1.18616 1.05065 0.93625 1.01868 1.20574 0.97791 0.93258 0.97174 1.20265 1.03072 0.98364 1.04660 1.20476 0.97024 0.97873 0.96560 1.21006 1.02704 0.93279 1.00882 1.17520 0.88545 0.91752 0.89308 1.19536 0.96124 1.12683 1.19567 0.89908 1.25940 0.95860 0.94794 0.97523 1.69812 1.01269 1.34316 1.35690 0.86429 0.77927 0.80708 0.82193 1.18855 1.20254 1.18666 1.21270 1.00500 0.90964 0.98528 1.21369 0.94166 0.98046 1.03324 1.18401 0.90046 0.89949 1.06154 1.59440 1.56822 1.03415 1.02630 1.22396 0.98979 0.97295 0.93060 1.22418 0.99401 0.97771 0.92262 0.92248 0.91106 0.92743 0.86539 0.89208 0.89443 0.89508 0.86611 0.90626 0.85442 0.87516 0.95354 0.91676 0.91425 0.91325 0.91671 0.95310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 9.76 36.01 0.35 -1.03 16 2 C -0.07 -1.16 5.89 -104.47 -0.62 -1.77 16 3 C -0.13 -2.48 9.16 -39.21 -0.36 -2.83 16 4 C 0.03 0.58 4.93 -104.86 -0.52 0.06 16 5 C -0.19 -4.54 5.52 -104.22 -0.58 -5.12 16 6 C -0.07 -1.57 9.51 -39.28 -0.37 -1.94 16 7 C -0.24 -5.43 10.03 -39.39 -0.40 -5.83 16 8 C -0.10 -2.34 9.96 -39.97 -0.40 -2.74 16 9 C -0.16 -4.05 8.63 -39.29 -0.34 -4.39 16 10 C 0.13 3.38 5.55 -106.55 -0.59 2.79 16 11 C -0.45 -11.44 7.12 -37.93 -0.27 -11.71 16 12 H 0.08 2.10 6.62 -52.49 -0.35 1.75 16 13 C 0.08 1.88 5.12 -17.31 -0.09 1.80 16 14 N -0.79 -19.59 11.07 55.55 0.61 -18.97 16 15 Si 0.90 18.34 29.60 -169.99 -5.03 13.31 16 16 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 17 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 18 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 19 C -0.09 -1.96 7.98 -39.20 -0.31 -2.28 16 20 C -0.15 -2.71 8.54 -39.44 -0.34 -3.05 16 21 C 0.05 0.81 4.71 -83.75 -0.39 0.42 16 22 N -0.50 -7.18 3.91 -186.79 -0.73 -7.91 16 23 C 0.03 0.37 9.34 60.06 0.56 0.93 16 24 C 0.03 0.36 9.38 60.07 0.56 0.93 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.07 0.97 7.45 -51.93 -0.39 0.58 16 27 H 0.05 0.71 8.08 -51.93 -0.42 0.29 16 28 H 0.12 2.12 8.04 -52.48 -0.42 1.70 16 29 H 0.09 1.81 8.04 -52.49 -0.42 1.39 16 30 H 0.09 1.72 8.06 -52.48 -0.42 1.30 16 31 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.12 3.01 6.27 -52.49 -0.33 2.68 16 33 H 0.28 6.44 8.30 -40.82 -0.34 6.10 16 34 H 0.13 2.85 7.30 -52.49 -0.38 2.47 16 35 H 0.11 1.77 6.99 -52.48 -0.37 1.40 16 36 H 0.03 0.35 7.10 -51.92 -0.37 -0.02 16 37 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 41 H 0.03 0.37 7.32 -51.93 -0.38 -0.01 16 LS Contribution 335.33 15.07 5.05 5.05 Total: -1.00 -26.37 335.33 -10.10 -36.48 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: -5.92 Total: 7.79 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: -4.09 Total: -35.75 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: -0.12 Total: -26.88 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -26.37 -10.10 -36.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242242242.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.488 kcal (2) G-P(sol) polarization free energy of solvation -26.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds