Wall clock time and date at job start Tue Mar 31 2020 05:09:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47090 * 2 1 4 4 C 1.37960 * 120.07057 * 268.42809 * 3 2 1 5 5 C 1.38374 * 120.14088 * 180.25628 * 4 3 2 6 6 C 1.38412 * 120.29519 * 359.74428 * 5 4 3 7 7 C 1.37915 * 120.14438 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.07213 * 179.97438 * 7 6 5 9 9 C 1.39586 * 120.07608 * 88.15319 * 3 2 1 10 10 C 1.47967 * 120.14465 * 0.02671 * 9 3 2 11 11 C 1.39891 * 119.45531 * 124.68405 * 10 9 3 12 12 C 1.36607 * 119.46847 * 179.97438 * 11 10 9 13 13 C 1.41301 * 118.41484 * 359.97438 * 12 11 10 14 14 C 1.41048 * 120.55787 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00525 * 208.45072 * 14 13 12 16 16 C 1.40033 * 119.99715 * 28.45612 * 14 13 12 17 17 N 1.30791 * 119.99886 * 13.26406 * 16 14 13 18 18 Si 1.86796 * 120.00338 * 193.26120 * 16 14 13 19 19 H 1.48500 * 109.46881 * 84.98588 * 18 16 14 20 20 H 1.48493 * 109.47587 * 204.98973 * 18 16 14 21 21 H 1.48506 * 109.46832 * 324.99357 * 18 16 14 22 22 C 1.40954 * 118.89047 * 359.97438 * 13 12 11 23 23 C 1.50703 * 119.79979 * 180.02562 * 22 13 12 24 24 N 1.31264 * 120.40142 * 0.02562 * 22 13 12 25 25 H 1.09003 * 109.47042 * 300.00205 * 1 2 3 26 26 H 1.09004 * 109.47247 * 60.00202 * 1 2 3 27 27 H 1.09004 * 109.47416 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47042 * 239.99795 * 2 1 3 29 29 H 1.09004 * 109.47247 * 119.99798 * 2 1 3 30 30 H 1.07994 * 119.93043 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.85117 * 179.72585 * 5 4 3 32 32 H 1.07994 * 119.92516 * 179.97438 * 6 5 4 33 33 H 1.08999 * 109.47119 * 269.50958 * 8 7 6 34 34 H 1.09000 * 109.47052 * 29.51190 * 8 7 6 35 35 H 1.09007 * 109.47170 * 149.51027 * 8 7 6 36 36 H 1.07998 * 120.26480 * 359.97438 * 11 10 9 37 37 H 1.07999 * 120.79285 * 179.72599 * 12 11 10 38 38 H 0.97002 * 120.00116 * 179.97438 * 17 16 14 39 39 H 1.08991 * 109.47448 * 269.98217 * 23 22 13 40 40 H 1.09008 * 109.46817 * 29.98300 * 23 22 13 41 41 H 1.09004 * 109.47032 * 149.97549 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2936 2.0616 -1.1935 5 6 2.7599 3.3644 -1.1950 6 6 2.9623 4.0350 -0.0012 7 6 2.6995 3.4079 1.1986 8 6 2.9210 4.1393 2.4974 9 6 2.2288 2.0933 1.2073 10 6 1.9453 1.4141 2.4909 11 6 2.9475 1.3359 3.4638 12 6 2.6860 0.7093 4.6492 13 6 1.4000 0.1590 4.8495 14 6 1.0812 -0.4982 6.0560 15 1 0.3381 -1.2818 6.0642 16 6 1.7283 -0.1346 7.2435 17 7 2.4271 0.9697 7.2957 18 14 1.5935 -1.2268 8.7529 19 1 2.6238 -2.2941 8.6851 20 1 1.8059 -0.4106 9.9751 21 1 0.2436 -1.8441 8.7982 22 6 0.4411 0.2779 3.8233 23 6 -0.9370 -0.3010 4.0153 24 7 0.7411 0.8897 2.7013 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.1382 1.5439 -2.1284 31 1 2.9672 3.8601 -2.1319 32 1 3.3268 5.0516 -0.0094 33 1 3.9385 3.9617 2.8455 34 1 2.7711 5.2078 2.3428 35 1 2.2134 3.7775 3.2435 36 1 3.9201 1.7675 3.2792 37 1 3.4452 0.6328 5.4134 38 1 2.8751 1.2218 8.1183 39 1 -0.9510 -1.3315 3.6606 40 1 -1.1967 -0.2775 5.0737 41 1 -1.6603 0.2875 3.4507 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242816804.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:10 Heat of formation + Delta-G solvation = 24.376915 kcal Electronic energy + Delta-G solvation = -21787.541773 eV Core-core repulsion = 18823.666456 eV Total energy + Delta-G solvation = -2963.875317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.51398 -37.98511 -34.31017 -33.94881 -32.57877 -31.09214 -30.44262 -28.89110 -26.98982 -26.47753 -25.06516 -23.23674 -22.11346 -20.65816 -19.98627 -19.64551 -17.40712 -16.14561 -15.58099 -15.21972 -14.67946 -14.53923 -13.96651 -13.60001 -13.24179 -13.13993 -12.93201 -12.87594 -12.45663 -12.21493 -11.92839 -11.75885 -11.66409 -11.60619 -11.35120 -11.29094 -11.10397 -10.99863 -10.90010 -10.84323 -10.49257 -10.20820 -10.12452 -9.75446 -9.46798 -8.38737 -8.17466 -8.09799 -7.88354 -7.30935 -6.92041 -4.54170 1.74673 1.87232 2.59360 2.92877 2.97589 2.99648 3.12521 3.78121 4.20715 4.52903 5.26169 5.26518 5.35794 5.37551 5.51759 5.67590 5.80447 5.90406 5.95559 6.04895 6.08124 6.14326 6.17215 6.31096 6.34506 6.46359 6.47489 6.57778 6.62388 6.63435 6.70445 6.77064 6.84405 6.88716 6.92682 7.02926 7.11777 7.13400 7.29261 7.36559 7.47087 7.72037 7.84029 7.90159 8.35525 8.58531 8.66242 9.58336 9.97871 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023853 B = 0.005148 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.556147 B = 5438.003286 C = 6256.090651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.070 4.070 3 C -0.065 4.065 4 C -0.130 4.130 5 C -0.134 4.134 6 C -0.130 4.130 7 C -0.080 4.080 8 C -0.110 4.110 9 C 0.015 3.985 10 C 0.013 3.987 11 C -0.126 4.126 12 C -0.135 4.135 13 C 0.075 3.925 14 C -0.441 4.441 15 H 0.086 0.914 16 C 0.073 3.927 17 N -0.787 5.787 18 Si 0.913 3.087 19 H -0.266 1.266 20 H -0.277 1.277 21 H -0.260 1.260 22 C 0.005 3.995 23 C -0.071 4.071 24 N -0.440 5.440 25 H 0.093 0.907 26 H 0.037 0.963 27 H 0.042 0.958 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.113 0.887 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.123 0.877 38 H 0.284 0.716 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.707 1.500 -7.251 7.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 C -0.065 4.065 4 C -0.148 4.148 5 C -0.152 4.152 6 C -0.148 4.148 7 C -0.081 4.081 8 C -0.166 4.166 9 C 0.014 3.986 10 C -0.122 4.122 11 C -0.147 4.147 12 C -0.161 4.161 13 C 0.070 3.930 14 C -0.470 4.470 15 H 0.104 0.896 16 C -0.146 4.146 17 N -0.411 5.411 18 Si 0.737 3.263 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.184 1.184 22 C -0.138 4.138 23 C -0.128 4.128 24 N -0.148 5.148 25 H 0.112 0.888 26 H 0.056 0.944 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.114 0.886 37 H 0.141 0.859 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.224 1.722 -7.707 7.900 hybrid contribution 0.853 -0.362 1.363 1.649 sum 1.078 1.360 -6.344 6.577 Atomic orbital electron populations 1.21886 0.94535 1.00921 1.03221 1.20339 0.96774 0.92357 1.01300 1.20004 0.98190 0.96293 0.92061 1.20828 1.01762 0.95135 0.97053 1.20953 1.01792 0.95099 0.97364 1.20794 1.02478 0.99518 0.92046 1.19991 0.99451 0.93593 0.95100 1.20788 1.02363 0.98455 0.95003 1.18417 0.96525 0.91906 0.91775 1.18625 0.91765 1.07901 0.93958 1.21226 0.98152 1.00731 0.94555 1.21264 0.97108 1.01830 0.95860 1.18376 0.90982 0.90596 0.93046 1.19589 1.19068 1.16872 0.91520 0.89633 1.26016 0.93056 0.94482 1.01069 1.69762 1.23326 1.18941 1.29108 0.86231 0.80173 0.80408 0.79480 1.19072 1.20179 1.18389 1.21013 0.95869 1.04782 0.92185 1.20249 0.92652 0.98515 1.01395 1.66823 1.19071 1.07040 1.21840 0.88785 0.94363 0.93882 0.92988 0.91047 0.86970 0.87024 0.86881 0.91637 0.92654 0.90702 0.88572 0.85891 0.90474 0.93441 0.91549 0.93291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.67 37.16 0.36 -2.16 16 2 C -0.07 -1.23 5.36 -27.89 -0.15 -1.38 16 3 C -0.06 -1.18 5.16 -104.22 -0.54 -1.72 16 4 C -0.13 -2.05 9.68 -39.63 -0.38 -2.44 16 5 C -0.13 -1.98 10.04 -39.47 -0.40 -2.38 16 6 C -0.13 -2.04 9.69 -39.64 -0.38 -2.42 16 7 C -0.08 -1.45 5.88 -104.22 -0.61 -2.07 16 8 C -0.11 -1.86 8.57 36.01 0.31 -1.55 16 9 C 0.01 0.29 5.54 -104.89 -0.58 -0.29 16 10 C 0.01 0.30 4.28 -82.75 -0.35 -0.06 16 11 C -0.13 -2.87 8.05 -39.55 -0.32 -3.19 16 12 C -0.14 -3.34 8.70 -39.01 -0.34 -3.68 16 13 C 0.07 1.87 5.55 -106.64 -0.59 1.28 16 14 C -0.44 -10.77 8.06 -37.84 -0.30 -11.07 16 15 H 0.09 1.99 6.98 -52.49 -0.37 1.62 16 16 C 0.07 1.70 5.22 -17.32 -0.09 1.61 16 17 N -0.79 -19.05 10.99 55.55 0.61 -18.44 16 18 Si 0.91 17.47 29.58 -169.99 -5.03 12.44 16 19 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 20 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 21 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 22 C 0.01 0.13 6.86 -81.81 -0.56 -0.43 16 23 C -0.07 -1.43 9.58 36.01 0.35 -1.08 16 24 N -0.44 -10.14 6.88 -5.39 -0.04 -10.18 16 25 H 0.09 1.83 5.82 -51.93 -0.30 1.53 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.05 0.79 8.08 -51.93 -0.42 0.37 16 29 H 0.07 1.42 6.97 -51.93 -0.36 1.06 16 30 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.11 1.32 8.06 -52.48 -0.42 0.90 16 32 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 33 H 0.06 1.05 7.72 -51.93 -0.40 0.65 16 34 H 0.05 0.80 8.08 -51.93 -0.42 0.38 16 35 H 0.07 1.47 6.67 -51.92 -0.35 1.13 16 36 H 0.10 2.01 7.34 -52.49 -0.39 1.63 16 37 H 0.12 3.10 6.40 -52.49 -0.34 2.77 16 38 H 0.28 6.27 8.30 -40.82 -0.34 5.93 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.33 6.82 -51.92 -0.35 0.97 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 330.59 15.07 4.98 4.98 Total: -1.00 -25.90 330.59 -9.85 -35.75 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -5.79 Total: 8.47 kcal Atomic # 6 Polarization: -28.43 SS G_CDS: -4.59 Total: -33.02 kcal Atomic # 7 Polarization: -29.19 SS G_CDS: 0.57 Total: -28.62 kcal Atomic # 14 Polarization: 17.47 SS G_CDS: -5.03 Total: 12.44 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -25.90 -9.85 -35.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242816804.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.129 kcal (2) G-P(sol) polarization free energy of solvation -25.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.752 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds