Wall clock time and date at job start Tue Mar 31 2020 05:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50700 * 109.47090 * 2 1 4 4 C 1.37960 * 120.07057 * 268.42809 * 3 2 1 5 5 C 1.38374 * 120.14088 * 180.25628 * 4 3 2 6 6 C 1.38412 * 120.29519 * 359.74428 * 5 4 3 7 7 C 1.37915 * 120.14438 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.07213 * 179.97438 * 7 6 5 9 9 C 1.39586 * 120.07608 * 88.15319 * 3 2 1 10 10 C 1.47967 * 120.14465 * 0.02671 * 9 3 2 11 11 C 1.39891 * 119.45531 * 124.68405 * 10 9 3 12 12 C 1.36607 * 119.46847 * 179.97438 * 11 10 9 13 13 C 1.41301 * 118.41484 * 359.97438 * 12 11 10 14 14 C 1.41048 * 120.55787 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00525 * 208.45072 * 14 13 12 16 16 C 1.40033 * 119.99715 * 28.45612 * 14 13 12 17 17 N 1.30791 * 119.99886 * 13.26406 * 16 14 13 18 18 Si 1.86796 * 120.00338 * 193.26120 * 16 14 13 19 19 H 1.48500 * 109.46881 * 84.98588 * 18 16 14 20 20 H 1.48493 * 109.47587 * 204.98973 * 18 16 14 21 21 H 1.48506 * 109.46832 * 324.99357 * 18 16 14 22 22 C 1.40954 * 118.89047 * 359.97438 * 13 12 11 23 23 C 1.50703 * 119.79979 * 180.02562 * 22 13 12 24 24 N 1.31264 * 120.40142 * 0.02562 * 22 13 12 25 25 H 1.09003 * 109.47042 * 300.00205 * 1 2 3 26 26 H 1.09004 * 109.47247 * 60.00202 * 1 2 3 27 27 H 1.09004 * 109.47416 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47042 * 239.99795 * 2 1 3 29 29 H 1.09004 * 109.47247 * 119.99798 * 2 1 3 30 30 H 1.07994 * 119.93043 * 359.97438 * 4 3 2 31 31 H 1.08004 * 119.85117 * 179.72585 * 5 4 3 32 32 H 1.07994 * 119.92516 * 179.97438 * 6 5 4 33 33 H 1.08999 * 109.47119 * 269.50958 * 8 7 6 34 34 H 1.09000 * 109.47052 * 29.51190 * 8 7 6 35 35 H 1.09007 * 109.47170 * 149.51027 * 8 7 6 36 36 H 1.07998 * 120.26480 * 359.97438 * 11 10 9 37 37 H 1.07999 * 120.79285 * 179.72599 * 12 11 10 38 38 H 0.97002 * 120.00116 * 179.97438 * 17 16 14 39 39 H 1.08991 * 109.47448 * 269.98217 * 23 22 13 40 40 H 1.09008 * 109.46817 * 29.98300 * 23 22 13 41 41 H 1.09004 * 109.47032 * 149.97549 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2936 2.0616 -1.1935 5 6 2.7599 3.3644 -1.1950 6 6 2.9623 4.0350 -0.0012 7 6 2.6995 3.4079 1.1986 8 6 2.9210 4.1393 2.4974 9 6 2.2288 2.0933 1.2073 10 6 1.9453 1.4141 2.4909 11 6 2.9475 1.3359 3.4638 12 6 2.6860 0.7093 4.6492 13 6 1.4000 0.1590 4.8495 14 6 1.0812 -0.4982 6.0560 15 1 0.3381 -1.2818 6.0642 16 6 1.7283 -0.1346 7.2435 17 7 2.4271 0.9697 7.2957 18 14 1.5935 -1.2268 8.7529 19 1 2.6238 -2.2941 8.6851 20 1 1.8059 -0.4106 9.9751 21 1 0.2436 -1.8441 8.7982 22 6 0.4411 0.2779 3.8233 23 6 -0.9370 -0.3010 4.0153 24 7 0.7411 0.8897 2.7013 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.1382 1.5439 -2.1284 31 1 2.9672 3.8601 -2.1319 32 1 3.3268 5.0516 -0.0094 33 1 3.9385 3.9617 2.8455 34 1 2.7711 5.2078 2.3428 35 1 2.2134 3.7775 3.2435 36 1 3.9201 1.7675 3.2792 37 1 3.4452 0.6328 5.4134 38 1 2.8751 1.2218 8.1183 39 1 -0.9510 -1.3315 3.6606 40 1 -1.1967 -0.2775 5.0737 41 1 -1.6603 0.2875 3.4507 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242816804.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:09 Heat of formation + Delta-G solvation = 14.517358 kcal Electronic energy + Delta-G solvation = -21787.969315 eV Core-core repulsion = 18823.666456 eV Total energy + Delta-G solvation = -2964.302859 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.03158 -39.56996 -36.02104 -35.33171 -34.13857 -32.75348 -32.07785 -30.30592 -28.71304 -27.86181 -26.70048 -24.63999 -23.72528 -22.37838 -21.51122 -21.00860 -19.21612 -17.65967 -17.14923 -16.69219 -16.29493 -16.01060 -15.56426 -15.01755 -14.78852 -14.59215 -14.44005 -14.31518 -13.98574 -13.58955 -13.48112 -13.40568 -13.32111 -13.08844 -12.88992 -12.72944 -12.68992 -12.56789 -12.33687 -12.30403 -11.96848 -11.63702 -11.49867 -11.43560 -11.17751 -10.11249 -9.90993 -9.54723 -9.37404 -9.00443 -8.67043 -6.38723 0.33209 0.58395 0.91640 1.13246 1.39016 1.51273 1.53443 2.17661 2.69611 2.96042 3.64775 3.82112 3.98323 4.04467 4.18307 4.27948 4.41286 4.50900 4.57935 4.64625 4.66853 4.71708 4.77389 4.81966 4.85550 4.97612 4.98889 5.01840 5.06901 5.12850 5.14955 5.24664 5.26635 5.30147 5.45960 5.54097 5.63178 5.67377 5.75738 5.87083 5.90649 6.05322 6.08988 6.27808 6.52656 6.77168 6.83623 7.77270 8.25712 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.023853 B = 0.005148 C = 0.004475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.556147 B = 5438.003286 C = 6256.090651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.068 4.068 3 C -0.078 4.078 4 C -0.130 4.130 5 C -0.120 4.120 6 C -0.129 4.129 7 C -0.095 4.095 8 C -0.104 4.104 9 C -0.026 4.026 10 C 0.023 3.977 11 C -0.133 4.133 12 C -0.154 4.154 13 C 0.044 3.956 14 C -0.469 4.469 15 H 0.090 0.910 16 C 0.034 3.966 17 N -0.822 5.822 18 Si 0.985 3.015 19 H -0.263 1.263 20 H -0.270 1.270 21 H -0.253 1.253 22 C -0.012 4.012 23 C -0.062 4.062 24 N -0.444 5.444 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.036 0.964 30 H 0.142 0.858 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.037 0.963 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.290 0.710 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.733 2.118 -9.454 9.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.105 4.105 3 C -0.079 4.079 4 C -0.148 4.148 5 C -0.138 4.138 6 C -0.147 4.147 7 C -0.096 4.096 8 C -0.161 4.161 9 C -0.027 4.027 10 C -0.114 4.114 11 C -0.153 4.153 12 C -0.180 4.180 13 C 0.040 3.960 14 C -0.498 4.498 15 H 0.108 0.892 16 C -0.182 4.182 17 N -0.447 5.447 18 Si 0.805 3.195 19 H -0.188 1.188 20 H -0.195 1.195 21 H -0.177 1.177 22 C -0.156 4.156 23 C -0.120 4.120 24 N -0.153 5.153 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.055 0.945 30 H 0.159 0.841 31 H 0.170 0.830 32 H 0.162 0.838 33 H 0.087 0.913 34 H 0.101 0.899 35 H 0.056 0.944 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.101 0.899 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.240 2.341 -9.922 10.197 hybrid contribution 0.892 -0.431 1.826 2.078 sum 1.132 1.910 -8.095 8.394 Atomic orbital electron populations 1.21789 0.94177 1.01382 1.02604 1.20309 0.97071 0.92306 1.00818 1.20164 0.98655 0.96592 0.92488 1.21170 1.00786 0.95768 0.97039 1.21445 0.99226 0.94513 0.98651 1.21153 1.01483 1.00821 0.91236 1.20175 0.99782 0.93141 0.96457 1.20723 1.01477 0.99918 0.93945 1.18512 0.99660 0.93295 0.91213 1.19118 0.91073 1.06314 0.94870 1.21377 0.98981 1.00582 0.94337 1.21254 0.97114 1.03259 0.96374 1.18711 0.91504 0.91649 0.94153 1.19804 1.20305 1.17613 0.92074 0.89204 1.26850 0.92235 0.95401 1.03684 1.69827 1.24236 1.20390 1.30232 0.85158 0.80300 0.78371 0.75652 1.18772 1.19498 1.17671 1.21555 0.97068 1.04836 0.92109 1.20214 0.91050 0.99224 1.01487 1.66983 1.19442 1.07295 1.21556 0.91621 0.92579 0.92910 0.90373 0.94492 0.84061 0.83031 0.83825 0.91251 0.89946 0.94408 0.87483 0.87342 0.89901 0.92056 0.91708 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.68 9.67 71.98 0.70 -3.98 16 2 C -0.07 -2.32 5.36 29.85 0.16 -2.16 16 3 C -0.08 -2.75 5.16 -19.60 -0.10 -2.85 16 4 C -0.13 -3.62 9.68 22.24 0.22 -3.41 16 5 C -0.12 -2.99 10.04 22.34 0.22 -2.77 16 6 C -0.13 -3.57 9.69 22.23 0.22 -3.35 16 7 C -0.09 -3.31 5.88 -19.60 -0.12 -3.42 16 8 C -0.10 -3.51 8.57 71.24 0.61 -2.90 16 9 C -0.03 -1.04 5.54 -20.04 -0.11 -1.15 16 10 C 0.02 1.05 4.28 41.94 0.18 1.23 16 11 C -0.13 -6.36 8.05 22.29 0.18 -6.18 16 12 C -0.15 -8.10 8.70 22.64 0.20 -7.90 16 13 C 0.04 2.33 5.55 -21.17 -0.12 2.21 16 14 C -0.47 -23.83 8.06 23.39 0.19 -23.64 16 15 H 0.09 4.31 6.98 -2.91 -0.02 4.29 16 16 C 0.03 1.64 5.22 85.28 0.45 2.09 16 17 N -0.82 -41.46 10.99 21.84 0.24 -41.22 16 18 Si 0.98 36.34 29.58 68.60 2.03 38.37 16 19 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 20 H -0.27 -9.59 7.11 99.48 0.71 -8.89 16 21 H -0.25 -8.98 7.11 99.48 0.71 -8.27 16 22 C -0.01 -0.62 6.86 43.31 0.30 -0.32 16 23 C -0.06 -2.57 9.58 71.24 0.68 -1.89 16 24 N -0.44 -21.27 6.88 -170.96 -1.18 -22.45 16 25 H 0.06 2.56 5.82 -2.39 -0.01 2.55 16 26 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 27 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.08 2.21 8.08 -2.39 -0.02 2.19 16 29 H 0.04 1.50 6.97 -2.38 -0.02 1.48 16 30 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 31 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 32 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 33 H 0.07 2.23 7.72 -2.39 -0.02 2.21 16 34 H 0.08 2.26 8.08 -2.39 -0.02 2.24 16 35 H 0.04 1.53 6.67 -2.38 -0.02 1.52 16 36 H 0.11 4.72 7.34 -2.91 -0.02 4.70 16 37 H 0.11 5.87 6.40 -2.91 -0.02 5.85 16 38 H 0.29 13.27 8.30 -92.71 -0.77 12.50 16 39 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 40 H 0.06 2.66 6.82 -2.38 -0.02 2.64 16 41 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -59.06 330.59 5.96 -53.10 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: 1.02 Total: 32.58 kcal Atomic # 6 Polarization: -64.23 SS G_CDS: 3.85 Total: -60.39 kcal Atomic # 7 Polarization: -62.73 SS G_CDS: -0.94 Total: -63.67 kcal Atomic # 14 Polarization: 36.34 SS G_CDS: 2.03 Total: 38.37 kcal Total: -59.06 5.96 -53.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242816804.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.619 kcal (2) G-P(sol) polarization free energy of solvation -59.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds