Wall clock time and date at job start Tue Mar 31 2020 05:09:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.47323 * 2 1 4 4 C 1.37939 * 120.08084 * 267.41998 * 3 2 1 5 5 C 1.38374 * 120.15314 * 180.02562 * 4 3 2 6 6 C 1.38425 * 120.30459 * 359.95512 * 5 4 3 7 7 C 1.37901 * 120.15335 * 359.76446 * 6 5 4 8 8 C 1.50697 * 120.07881 * 180.27559 * 7 6 5 9 9 C 1.39660 * 120.07303 * 87.43859 * 3 2 1 10 10 C 1.47823 * 120.14918 * 359.97438 * 9 3 2 11 11 N 1.32576 * 119.99225 * 286.23412 * 10 9 3 12 12 C 1.31740 * 121.72298 * 179.97438 * 11 10 9 13 13 C 1.50694 * 119.25240 * 180.02562 * 12 11 10 14 14 C 1.38877 * 121.50526 * 0.02562 * 12 11 10 15 15 C 1.36889 * 119.79453 * 0.02562 * 14 12 11 16 16 C 1.41126 * 118.39753 * 359.97438 * 15 14 12 17 17 C 1.40883 * 120.72079 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00432 * 152.35729 * 17 16 15 19 19 C 1.40080 * 119.99723 * 332.35553 * 17 16 15 20 20 N 1.30770 * 120.00312 * 348.00631 * 19 17 16 21 21 Si 1.86806 * 119.99718 * 168.00225 * 19 17 16 22 22 H 1.48496 * 109.46787 * 90.00061 * 21 19 17 23 23 H 1.48497 * 109.47117 * 210.00021 * 21 19 17 24 24 H 1.48499 * 109.47257 * 330.00230 * 21 19 17 25 25 H 1.08989 * 109.46971 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46391 * 299.99540 * 1 2 3 27 27 H 1.09001 * 109.47100 * 59.99229 * 1 2 3 28 28 H 1.09006 * 109.46900 * 240.01031 * 2 1 3 29 29 H 1.08998 * 109.47649 * 120.00274 * 2 1 3 30 30 H 1.07995 * 119.92034 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.84850 * 179.97438 * 5 4 3 32 32 H 1.08002 * 119.92299 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.47067 * 263.38813 * 8 7 6 34 34 H 1.09003 * 109.47226 * 23.38412 * 8 7 6 35 35 H 1.08997 * 109.47310 * 143.38712 * 8 7 6 36 36 H 1.09008 * 109.46677 * 90.00109 * 13 12 11 37 37 H 1.08995 * 109.47896 * 210.00403 * 13 12 11 38 38 H 1.09004 * 109.47300 * 330.01043 * 13 12 11 39 39 H 1.07996 * 120.10351 * 180.02562 * 14 12 11 40 40 H 1.08002 * 120.80017 * 179.97438 * 15 14 12 41 41 H 0.96993 * 120.00291 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3136 2.0548 -1.1924 5 6 2.7754 3.3591 -1.1941 6 6 2.9577 4.0371 -0.0011 7 6 2.6751 3.4175 1.1980 8 6 2.8683 4.1593 2.4954 9 6 2.2148 2.0987 1.2074 10 6 1.9155 1.4258 2.4891 11 7 0.6568 1.2267 2.8550 12 6 0.3512 0.6304 3.9893 13 6 -1.0985 0.4323 4.3498 14 6 1.3346 0.1802 4.8605 15 6 2.6550 0.3548 4.5445 16 6 2.9752 0.9943 3.3278 17 6 4.3180 1.1997 2.9543 18 1 4.5849 1.2590 1.9095 19 6 5.3069 1.3272 3.9382 20 7 4.9665 1.4911 5.1901 21 14 7.1121 1.2629 3.4617 22 1 7.5919 2.6342 3.1541 23 1 7.9016 0.7033 4.5880 24 1 7.2776 0.4003 2.2643 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 2.1729 1.5318 -2.1267 31 1 2.9944 3.8506 -2.1306 32 1 3.3181 5.0552 -0.0097 33 1 3.8394 3.9033 2.9192 34 1 2.8242 5.2326 2.3104 35 1 2.0811 3.8786 3.1952 36 1 -1.4421 -0.5258 3.9597 37 1 -1.2082 0.4436 5.4341 38 1 -1.6939 1.2357 3.9160 39 1 1.0585 -0.3061 5.7843 40 1 3.4331 0.0114 5.2102 41 1 5.6513 1.5798 5.8713 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242816832.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:13 Heat of formation + Delta-G solvation = 23.849529 kcal Electronic energy + Delta-G solvation = -22335.098936 eV Core-core repulsion = 19371.200750 eV Total energy + Delta-G solvation = -2963.898186 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.37426 -37.84444 -34.34354 -33.78276 -32.46559 -30.90864 -30.34216 -28.66538 -27.70110 -26.23936 -24.34983 -23.26581 -22.19415 -20.75717 -19.81378 -19.53991 -17.35822 -15.88743 -15.58116 -15.14595 -14.68179 -14.33510 -14.00683 -13.43530 -13.13521 -13.05450 -12.93424 -12.68481 -12.44131 -12.10435 -11.87299 -11.78964 -11.63970 -11.46232 -11.32385 -11.27038 -11.14360 -10.94401 -10.83318 -10.61420 -10.55875 -10.19129 -10.05646 -9.74218 -9.40409 -8.31900 -8.09102 -7.88305 -7.72084 -7.38570 -6.86701 -4.50393 2.03881 2.10207 2.57409 2.91044 2.99120 3.04258 3.14603 3.82238 4.42686 4.54440 5.37752 5.40439 5.46859 5.51098 5.62178 5.77692 5.93646 6.02120 6.03728 6.06967 6.12558 6.21954 6.30408 6.35965 6.40258 6.45753 6.52593 6.55354 6.56886 6.75031 6.78919 6.83986 6.93248 6.98503 7.04988 7.06879 7.11796 7.16464 7.35588 7.52743 7.66625 7.71969 7.90150 7.94405 8.40760 8.62872 8.70156 9.60311 10.01444 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011918 B = 0.009258 C = 0.006396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.900629 B = 3023.717166 C = 4376.456903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.074 4.074 3 C -0.069 4.069 4 C -0.134 4.134 5 C -0.132 4.132 6 C -0.135 4.135 7 C -0.057 4.057 8 C -0.104 4.104 9 C 0.032 3.968 10 C 0.031 3.969 11 N -0.445 5.445 12 C -0.013 4.013 13 C -0.073 4.073 14 C -0.145 4.145 15 C -0.130 4.130 16 C 0.084 3.916 17 C -0.433 4.433 18 H 0.082 0.918 19 C 0.075 3.925 20 N -0.790 5.790 21 Si 0.906 3.094 22 H -0.267 1.267 23 H -0.275 1.275 24 H -0.259 1.259 25 H 0.043 0.957 26 H 0.082 0.918 27 H 0.042 0.958 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.110 0.890 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.046 0.954 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.050 0.950 38 H 0.054 0.946 39 H 0.096 0.904 40 H 0.127 0.873 41 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.187 0.549 -4.986 5.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.070 4.070 4 C -0.152 4.152 5 C -0.150 4.150 6 C -0.153 4.153 7 C -0.058 4.058 8 C -0.160 4.160 9 C 0.031 3.969 10 C -0.109 4.109 11 N -0.153 5.153 12 C -0.153 4.153 13 C -0.131 4.131 14 C -0.165 4.165 15 C -0.156 4.156 16 C 0.080 3.920 17 C -0.463 4.463 18 H 0.100 0.900 19 C -0.143 4.143 20 N -0.415 5.415 21 Si 0.730 3.270 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.183 1.183 25 H 0.062 0.938 26 H 0.101 0.899 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.128 0.872 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.099 0.901 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.114 0.886 40 H 0.145 0.855 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.756 0.858 -5.258 5.998 hybrid contribution 1.700 -0.287 0.511 1.798 sum -1.056 0.571 -4.748 4.897 Atomic orbital electron populations 1.21805 0.94958 1.00702 1.02937 1.20363 0.96199 0.92895 1.01665 1.19973 0.98733 0.96009 0.92290 1.20738 1.02406 0.95211 0.96851 1.20910 1.01836 0.95008 0.97259 1.20800 1.02824 0.99570 0.92143 1.19979 0.97327 0.93570 0.94927 1.20679 1.03642 0.97106 0.94604 1.18121 0.95899 0.91795 0.91052 1.19312 0.88247 1.06773 0.96545 1.66848 1.21149 1.11614 1.15710 1.20212 0.94552 1.07024 0.93510 1.20271 0.92780 1.00501 0.99525 1.21227 0.94385 1.01931 0.98996 1.21421 0.94774 1.00332 0.99027 1.18276 0.93253 0.89182 0.91296 1.19457 0.91083 1.41341 0.94412 0.90035 1.25953 1.01771 0.92216 0.94388 1.69740 1.36336 1.33794 1.01633 0.86316 0.81335 0.79764 0.79575 1.19203 1.20012 1.18272 0.93803 0.89928 0.93845 0.92613 0.91048 0.87193 0.87229 0.87045 0.90122 0.93467 0.91752 0.93317 0.93074 0.92709 0.88630 0.85540 0.90591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.90 37.16 0.37 -2.16 16 2 C -0.07 -1.37 5.63 -27.88 -0.16 -1.52 16 3 C -0.07 -1.38 5.17 -104.20 -0.54 -1.92 16 4 C -0.13 -2.34 9.68 -39.64 -0.38 -2.72 16 5 C -0.13 -2.19 10.04 -39.46 -0.40 -2.59 16 6 C -0.14 -2.42 9.66 -39.64 -0.38 -2.80 16 7 C -0.06 -1.18 5.68 -104.20 -0.59 -1.77 16 8 C -0.10 -2.10 9.03 36.00 0.33 -1.77 16 9 C 0.03 0.71 4.37 -104.90 -0.46 0.25 16 10 C 0.03 0.73 3.45 -82.24 -0.28 0.45 16 11 N -0.44 -10.36 8.44 -5.45 -0.05 -10.40 16 12 C -0.01 -0.28 6.79 -82.40 -0.56 -0.84 16 13 C -0.07 -1.30 10.15 36.00 0.37 -0.93 16 14 C -0.15 -3.27 9.65 -39.83 -0.38 -3.65 16 15 C -0.13 -3.19 8.72 -38.98 -0.34 -3.53 16 16 C 0.08 2.11 5.34 -106.41 -0.57 1.54 16 17 C -0.43 -10.72 7.38 -37.89 -0.28 -11.00 16 18 H 0.08 2.05 7.32 -52.49 -0.38 1.66 16 19 C 0.08 1.77 5.26 -17.31 -0.09 1.68 16 20 N -0.79 -18.99 10.87 55.55 0.60 -18.39 16 21 Si 0.91 18.00 29.58 -169.99 -5.03 12.97 16 22 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 23 H -0.28 -5.34 7.11 56.52 0.40 -4.93 16 24 H -0.26 -5.19 7.11 56.52 0.40 -4.78 16 25 H 0.04 0.67 8.14 -51.94 -0.42 0.25 16 26 H 0.08 1.62 6.30 -51.92 -0.33 1.29 16 27 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.90 8.07 -51.93 -0.42 0.48 16 29 H 0.07 1.49 7.18 -51.93 -0.37 1.12 16 30 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 32 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 33 H 0.08 1.75 7.50 -51.93 -0.39 1.36 16 34 H 0.05 0.80 8.04 -51.93 -0.42 0.38 16 35 H 0.06 1.43 7.35 -51.93 -0.38 1.04 16 36 H 0.05 0.79 8.14 -51.92 -0.42 0.37 16 37 H 0.05 0.81 8.07 -51.93 -0.42 0.39 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.10 1.91 8.06 -52.49 -0.42 1.48 16 40 H 0.13 3.18 6.28 -52.49 -0.33 2.85 16 41 H 0.28 6.24 8.29 -40.82 -0.34 5.90 16 LS Contribution 335.32 15.07 5.05 5.05 Total: -1.00 -25.99 335.32 -9.73 -35.73 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -5.96 Total: 8.33 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: -4.36 Total: -33.29 kcal Atomic # 7 Polarization: -29.35 SS G_CDS: 0.56 Total: -28.79 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.03 Total: 12.97 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -25.99 -9.73 -35.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242816832.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.575 kcal (2) G-P(sol) polarization free energy of solvation -25.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds