Wall clock time and date at job start Tue Mar 31 2020 05:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50706 * 109.47323 * 2 1 4 4 C 1.37939 * 120.08084 * 267.41998 * 3 2 1 5 5 C 1.38374 * 120.15314 * 180.02562 * 4 3 2 6 6 C 1.38425 * 120.30459 * 359.95512 * 5 4 3 7 7 C 1.37901 * 120.15335 * 359.76446 * 6 5 4 8 8 C 1.50697 * 120.07881 * 180.27559 * 7 6 5 9 9 C 1.39660 * 120.07303 * 87.43859 * 3 2 1 10 10 C 1.47823 * 120.14918 * 359.97438 * 9 3 2 11 11 N 1.32576 * 119.99225 * 286.23412 * 10 9 3 12 12 C 1.31740 * 121.72298 * 179.97438 * 11 10 9 13 13 C 1.50694 * 119.25240 * 180.02562 * 12 11 10 14 14 C 1.38877 * 121.50526 * 0.02562 * 12 11 10 15 15 C 1.36889 * 119.79453 * 0.02562 * 14 12 11 16 16 C 1.41126 * 118.39753 * 359.97438 * 15 14 12 17 17 C 1.40883 * 120.72079 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00432 * 152.35729 * 17 16 15 19 19 C 1.40080 * 119.99723 * 332.35553 * 17 16 15 20 20 N 1.30770 * 120.00312 * 348.00631 * 19 17 16 21 21 Si 1.86806 * 119.99718 * 168.00225 * 19 17 16 22 22 H 1.48496 * 109.46787 * 90.00061 * 21 19 17 23 23 H 1.48497 * 109.47117 * 210.00021 * 21 19 17 24 24 H 1.48499 * 109.47257 * 330.00230 * 21 19 17 25 25 H 1.08989 * 109.46971 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46391 * 299.99540 * 1 2 3 27 27 H 1.09001 * 109.47100 * 59.99229 * 1 2 3 28 28 H 1.09006 * 109.46900 * 240.01031 * 2 1 3 29 29 H 1.08998 * 109.47649 * 120.00274 * 2 1 3 30 30 H 1.07995 * 119.92034 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.84850 * 179.97438 * 5 4 3 32 32 H 1.08002 * 119.92299 * 180.02562 * 6 5 4 33 33 H 1.08999 * 109.47067 * 263.38813 * 8 7 6 34 34 H 1.09003 * 109.47226 * 23.38412 * 8 7 6 35 35 H 1.08997 * 109.47310 * 143.38712 * 8 7 6 36 36 H 1.09008 * 109.46677 * 90.00109 * 13 12 11 37 37 H 1.08995 * 109.47896 * 210.00403 * 13 12 11 38 38 H 1.09004 * 109.47300 * 330.01043 * 13 12 11 39 39 H 1.07996 * 120.10351 * 180.02562 * 14 12 11 40 40 H 1.08002 * 120.80017 * 179.97438 * 15 14 12 41 41 H 0.96993 * 120.00291 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3136 2.0548 -1.1924 5 6 2.7754 3.3591 -1.1941 6 6 2.9577 4.0371 -0.0011 7 6 2.6751 3.4175 1.1980 8 6 2.8683 4.1593 2.4954 9 6 2.2148 2.0987 1.2074 10 6 1.9155 1.4258 2.4891 11 7 0.6568 1.2267 2.8550 12 6 0.3512 0.6304 3.9893 13 6 -1.0985 0.4323 4.3498 14 6 1.3346 0.1802 4.8605 15 6 2.6550 0.3548 4.5445 16 6 2.9752 0.9943 3.3278 17 6 4.3180 1.1997 2.9543 18 1 4.5849 1.2590 1.9095 19 6 5.3069 1.3272 3.9382 20 7 4.9665 1.4911 5.1901 21 14 7.1121 1.2629 3.4617 22 1 7.5919 2.6342 3.1541 23 1 7.9016 0.7033 4.5880 24 1 7.2776 0.4003 2.2643 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5140 -0.8899 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 2.1729 1.5318 -2.1267 31 1 2.9944 3.8506 -2.1306 32 1 3.3181 5.0552 -0.0097 33 1 3.8394 3.9033 2.9192 34 1 2.8242 5.2326 2.3104 35 1 2.0811 3.8786 3.1952 36 1 -1.4421 -0.5258 3.9597 37 1 -1.2082 0.4436 5.4341 38 1 -1.6939 1.2357 3.9160 39 1 1.0585 -0.3061 5.7843 40 1 3.4331 0.0114 5.2102 41 1 5.6513 1.5798 5.8713 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242816832.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:12 Heat of formation + Delta-G solvation = 13.549242 kcal Electronic energy + Delta-G solvation = -22335.545590 eV Core-core repulsion = 19371.200750 eV Total energy + Delta-G solvation = -2964.344840 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.97604 -39.45632 -36.10664 -35.24683 -34.03908 -32.65101 -31.95526 -30.13796 -29.40512 -27.77251 -26.02428 -24.75933 -23.80828 -22.51878 -21.37887 -21.00985 -19.18449 -17.40805 -17.32032 -16.65986 -16.28644 -15.91406 -15.66087 -14.93172 -14.71006 -14.56041 -14.43505 -14.25859 -14.05448 -13.60028 -13.50675 -13.41022 -13.18768 -13.08351 -12.90966 -12.77405 -12.67584 -12.57950 -12.28993 -12.22011 -12.06265 -11.74495 -11.50729 -11.39329 -11.16164 -10.10284 -9.87764 -9.36088 -9.30856 -9.09721 -8.62696 -6.35176 0.53777 0.65574 0.86185 1.12773 1.35073 1.45122 1.49529 2.16341 2.74092 2.99255 3.66321 3.85791 4.01268 4.07858 4.23149 4.40013 4.41112 4.51751 4.55383 4.63131 4.65482 4.73430 4.81610 4.86920 4.87847 4.97723 5.00756 5.02055 5.07641 5.12006 5.22929 5.25643 5.27340 5.35082 5.39860 5.52174 5.57210 5.71816 5.80202 5.88482 5.99176 6.08602 6.12932 6.32402 6.57597 6.80360 6.88306 7.81087 8.27289 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011918 B = 0.009258 C = 0.006396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2348.900629 B = 3023.717166 C = 4376.456903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.070 4.070 3 C -0.087 4.087 4 C -0.132 4.132 5 C -0.122 4.122 6 C -0.136 4.136 7 C -0.083 4.083 8 C -0.091 4.091 9 C -0.003 4.003 10 C 0.037 3.963 11 N -0.458 5.458 12 C -0.021 4.021 13 C -0.067 4.067 14 C -0.153 4.153 15 C -0.154 4.154 16 C 0.057 3.943 17 C -0.452 4.452 18 H 0.068 0.932 19 C 0.041 3.959 20 N -0.819 5.819 21 Si 0.968 3.032 22 H -0.262 1.262 23 H -0.265 1.265 24 H -0.262 1.262 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.061 0.939 28 H 0.081 0.919 29 H 0.034 0.966 30 H 0.142 0.858 31 H 0.151 0.849 32 H 0.139 0.861 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.031 0.969 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.120 0.880 40 H 0.113 0.887 41 H 0.289 0.711 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.354 1.110 -7.225 7.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 C -0.088 4.088 4 C -0.149 4.149 5 C -0.140 4.140 6 C -0.153 4.153 7 C -0.084 4.084 8 C -0.147 4.147 9 C -0.004 4.004 10 C -0.103 4.103 11 N -0.166 5.166 12 C -0.161 4.161 13 C -0.125 4.125 14 C -0.173 4.173 15 C -0.180 4.180 16 C 0.053 3.947 17 C -0.482 4.482 18 H 0.087 0.913 19 C -0.175 4.175 20 N -0.444 5.444 21 Si 0.790 3.210 22 H -0.186 1.186 23 H -0.189 1.189 24 H -0.186 1.186 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.099 0.901 29 H 0.053 0.947 30 H 0.160 0.840 31 H 0.169 0.831 32 H 0.157 0.843 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.051 0.949 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.943 1.416 -7.488 8.169 hybrid contribution 1.635 -0.445 1.153 2.049 sum -1.309 0.971 -6.335 6.541 Atomic orbital electron populations 1.21715 0.93962 1.01530 1.02415 1.20337 0.97034 0.92369 1.01033 1.20210 0.99342 0.96607 0.92620 1.21124 1.01067 0.95752 0.97003 1.21386 0.99650 0.94571 0.98379 1.21140 1.01875 1.00827 0.91495 1.20131 0.98761 0.93566 0.95950 1.20511 1.01011 0.99019 0.94194 1.18295 0.98208 0.92839 0.91060 1.19659 0.88024 1.05530 0.97088 1.67003 1.21081 1.12263 1.16297 1.20991 0.96738 1.05501 0.92826 1.20311 0.89679 1.01436 1.01053 1.21506 0.93772 1.01943 1.00086 1.21445 0.95525 1.01634 0.99392 1.18570 0.94119 0.89972 0.92016 1.19407 0.91695 1.43069 0.94009 0.91344 1.26626 1.05264 0.91448 0.94122 1.69785 1.37699 1.34497 1.02450 0.85387 0.76613 0.79776 0.79261 1.18618 1.18912 1.18568 0.92302 0.92634 0.92024 0.90067 0.94693 0.83976 0.83088 0.84290 0.92491 0.90387 0.94941 0.91620 0.90927 0.92428 0.86237 0.86913 0.89982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.63 9.90 71.98 0.71 -3.92 16 2 C -0.07 -2.57 5.63 29.85 0.17 -2.40 16 3 C -0.09 -3.40 5.17 -19.59 -0.10 -3.50 16 4 C -0.13 -4.18 9.68 22.23 0.22 -3.97 16 5 C -0.12 -3.58 10.04 22.35 0.22 -3.35 16 6 C -0.14 -4.51 9.66 22.23 0.21 -4.30 16 7 C -0.08 -3.44 5.68 -19.59 -0.11 -3.55 16 8 C -0.09 -3.77 9.03 71.24 0.64 -3.13 16 9 C 0.00 -0.14 4.37 -20.05 -0.09 -0.23 16 10 C 0.04 1.81 3.45 42.47 0.15 1.96 16 11 N -0.46 -21.94 8.44 -171.14 -1.45 -23.39 16 12 C -0.02 -0.92 6.79 42.72 0.29 -0.63 16 13 C -0.07 -2.31 10.15 71.23 0.72 -1.59 16 14 C -0.15 -7.08 9.65 22.11 0.21 -6.87 16 15 C -0.15 -7.98 8.72 22.66 0.20 -7.79 16 16 C 0.06 3.03 5.34 -21.02 -0.11 2.92 16 17 C -0.45 -23.50 7.38 23.36 0.17 -23.33 16 18 H 0.07 3.62 7.32 -2.91 -0.02 3.60 16 19 C 0.04 2.00 5.26 85.30 0.45 2.45 16 20 N -0.82 -41.03 10.87 21.85 0.24 -40.79 16 21 Si 0.97 37.63 29.58 68.60 2.03 39.66 16 22 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 23 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 24 H -0.26 -10.17 7.11 99.48 0.71 -9.47 16 25 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 26 H 0.05 2.16 6.30 -2.38 -0.02 2.15 16 27 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.08 2.48 8.07 -2.38 -0.02 2.46 16 29 H 0.03 1.50 7.18 -2.39 -0.02 1.49 16 30 H 0.14 3.55 8.06 -2.91 -0.02 3.53 16 31 H 0.15 3.20 8.06 -2.91 -0.02 3.18 16 32 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 33 H 0.06 2.59 7.50 -2.39 -0.02 2.58 16 34 H 0.08 2.63 8.04 -2.39 -0.02 2.61 16 35 H 0.03 1.50 7.35 -2.39 -0.02 1.48 16 36 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 37 H 0.07 2.16 8.07 -2.39 -0.02 2.15 16 38 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 39 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 40 H 0.11 6.03 6.28 -2.91 -0.02 6.01 16 41 H 0.29 13.17 8.29 -92.71 -0.77 12.40 16 Total: -1.00 -59.62 335.32 5.79 -53.83 By element: Atomic # 1 Polarization: 30.90 SS G_CDS: 1.02 Total: 31.92 kcal Atomic # 6 Polarization: -65.19 SS G_CDS: 3.96 Total: -61.23 kcal Atomic # 7 Polarization: -62.97 SS G_CDS: -1.21 Total: -64.18 kcal Atomic # 14 Polarization: 37.63 SS G_CDS: 2.03 Total: 39.66 kcal Total: -59.62 5.79 -53.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242816832.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.378 kcal (2) G-P(sol) polarization free energy of solvation -59.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds