Wall clock time and date at job start Tue Mar 31 2020 05:56:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46901 * 110.99840 * 2 1 4 4 C 1.50698 * 109.46905 * 179.97438 * 3 2 1 5 5 C 1.38327 * 119.87616 * 90.00218 * 4 3 2 6 6 C 1.38011 * 120.11863 * 180.02562 * 5 4 3 7 7 C 1.39343 * 119.88059 * 359.97438 * 6 5 4 8 8 C 1.48397 * 120.11880 * 180.02562 * 7 6 5 9 9 C 1.39336 * 120.12121 * 0.25111 * 8 7 6 10 10 C 1.38016 * 119.87481 * 180.23477 * 9 8 7 11 11 C 1.38322 * 120.11965 * 359.48902 * 10 9 8 12 12 C 1.50699 * 119.87892 * 180.25700 * 11 10 9 13 13 C 1.50703 * 109.47108 * 89.99969 * 12 11 10 14 14 H 1.07999 * 120.00185 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99922 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00027 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 120.00351 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.46940 * 89.99671 * 17 15 13 19 19 H 1.48502 * 109.47376 * 210.00124 * 17 15 13 20 20 H 1.48506 * 109.46981 * 330.00397 * 17 15 13 21 21 C 1.38317 * 120.24488 * 0.27948 * 11 10 9 22 22 C 1.38017 * 120.12228 * 359.97438 * 21 11 10 23 23 C 1.39337 * 119.75522 * 0.27527 * 7 6 5 24 24 C 1.38016 * 119.87867 * 359.44833 * 23 7 6 25 25 H 1.09000 * 109.46775 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47327 * 300.00277 * 1 2 3 27 27 H 1.08996 * 109.47097 * 60.00561 * 1 2 3 28 28 H 1.00901 * 111.00154 * 236.04284 * 2 1 3 29 29 H 1.09003 * 109.46898 * 59.99564 * 3 2 1 30 30 H 1.09002 * 109.47012 * 299.99931 * 3 2 1 31 31 H 1.08001 * 119.93648 * 359.97438 * 5 4 3 32 32 H 1.08004 * 120.05987 * 179.97438 * 6 5 4 33 33 H 1.07998 * 120.06185 * 0.02562 * 9 8 7 34 34 H 1.08002 * 119.94256 * 179.77394 * 10 9 8 35 35 H 1.09000 * 109.47628 * 210.00526 * 12 11 10 36 36 H 1.08999 * 109.47186 * 330.00306 * 12 11 10 37 37 H 0.97008 * 120.00219 * 179.97438 * 16 15 13 38 38 H 1.08006 * 119.94088 * 179.97438 * 21 11 10 39 39 H 1.08005 * 120.06400 * 179.97438 * 22 21 11 40 40 H 1.07998 * 120.05805 * 179.70560 * 23 7 6 41 41 H 1.08001 * 119.94236 * 180.26944 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 3.5019 1.3312 0.0006 5 6 4.1912 1.3127 -1.1985 6 6 5.5708 1.2753 -1.2038 7 6 6.2694 1.2568 0.0018 8 6 7.7528 1.2172 0.0023 9 6 8.4523 1.2037 -1.2027 10 6 9.8319 1.1619 -1.1963 11 6 10.5202 1.1442 0.0034 12 6 12.0267 1.1044 0.0040 13 6 12.5663 2.5115 0.0037 14 1 11.8864 3.3507 0.0035 15 6 13.9280 2.7276 0.0036 16 7 14.3990 3.9555 0.0039 17 14 15.1041 1.2763 0.0032 18 1 15.4155 0.8920 -1.3970 19 1 16.3578 1.6549 0.7033 20 1 14.4737 0.1281 0.7030 21 6 9.8309 1.1623 1.2024 22 6 8.4513 1.1988 1.2078 23 6 5.5697 1.2704 1.2067 24 6 4.1903 1.3135 1.2003 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8900 28 1 1.8307 -0.5262 -0.7813 29 1 1.6459 1.8948 0.8900 30 1 1.6459 1.8948 -0.8900 31 1 3.6487 1.3267 -2.1323 32 1 6.1080 1.2605 -2.1406 33 1 7.9160 1.2224 -2.1399 34 1 10.3751 1.1477 -2.1296 35 1 12.3760 0.5814 0.8942 36 1 12.3767 0.5809 -0.8857 37 1 15.3571 4.1076 0.0042 38 1 10.3734 1.1479 2.1363 39 1 7.9140 1.2125 2.1446 40 1 6.1061 1.2513 2.1439 41 1 3.6471 1.3284 2.1336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242992236.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:01 Heat of formation + Delta-G solvation = 38.517176 kcal Electronic energy + Delta-G solvation = -19925.574633 eV Core-core repulsion = 16962.312484 eV Total energy + Delta-G solvation = -2963.262149 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.80754 -38.39197 -36.24081 -33.76933 -32.34456 -31.31493 -30.57780 -30.17092 -27.99574 -26.06351 -24.00792 -23.35259 -22.74127 -21.24848 -21.19272 -19.87766 -17.25360 -16.79833 -16.34563 -15.65194 -15.28076 -14.95744 -14.78675 -14.25324 -13.98617 -13.98425 -13.74014 -13.60840 -13.05397 -12.76842 -12.75679 -12.41732 -12.29430 -12.14829 -11.93684 -11.67449 -11.38315 -11.16994 -10.98371 -10.62179 -10.22797 -10.14717 -9.98109 -9.45353 -9.08570 -8.94310 -8.79331 -8.60968 -8.40629 -7.43618 -6.09752 -4.09321 0.89968 1.42076 1.96622 2.24710 3.26805 3.34806 3.37364 3.68557 4.12513 4.39138 4.49800 4.58651 4.69214 4.86381 4.94135 4.98253 5.04144 5.14176 5.21890 5.30176 5.33583 5.44213 5.48956 5.49394 5.56654 5.82024 5.90395 5.98355 6.09471 6.11366 6.27518 6.48015 6.51758 6.53328 6.57568 6.61382 6.90707 6.93893 6.96976 6.98407 7.06965 7.07188 7.53898 7.54269 7.67985 8.46517 8.95344 9.50072 11.03030 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.052349 B = 0.002615 C = 0.002597 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 534.744137 B =10704.649737 C =10780.942241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.691 5.691 3 C 0.100 3.900 4 C -0.101 4.101 5 C -0.110 4.110 6 C -0.119 4.119 7 C -0.018 4.018 8 C -0.087 4.087 9 C -0.105 4.105 10 C -0.123 4.123 11 C -0.020 4.020 12 C 0.012 3.988 13 C -0.514 4.514 14 H 0.074 0.926 15 C 0.069 3.931 16 N -0.899 5.899 17 Si 0.878 3.122 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.265 1.265 21 C -0.122 4.122 22 C -0.105 4.105 23 C -0.120 4.120 24 C -0.093 4.093 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.021 0.979 28 H 0.343 0.657 29 H 0.079 0.921 30 H 0.037 0.963 31 H 0.116 0.884 32 H 0.125 0.875 33 H 0.116 0.884 34 H 0.121 0.879 35 H 0.029 0.971 36 H 0.024 0.976 37 H 0.264 0.736 38 H 0.121 0.879 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.141 -7.632 -0.755 25.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.321 5.321 3 C -0.028 4.028 4 C -0.102 4.102 5 C -0.129 4.129 6 C -0.137 4.137 7 C -0.018 4.018 8 C -0.087 4.087 9 C -0.123 4.123 10 C -0.141 4.141 11 C -0.020 4.020 12 C -0.025 4.025 13 C -0.551 4.551 14 H 0.092 0.908 15 C -0.133 4.133 16 N -0.537 5.537 17 Si 0.705 3.295 18 H -0.201 1.201 19 H -0.212 1.212 20 H -0.189 1.189 21 C -0.140 4.140 22 C -0.123 4.123 23 C -0.137 4.137 24 C -0.111 4.111 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.039 0.961 28 H 0.161 0.839 29 H 0.097 0.903 30 H 0.055 0.945 31 H 0.134 0.866 32 H 0.143 0.857 33 H 0.134 0.866 34 H 0.139 0.861 35 H 0.047 0.953 36 H 0.043 0.957 37 H 0.074 0.926 38 H 0.139 0.861 39 H 0.135 0.865 40 H 0.143 0.857 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -23.949 -7.588 -0.065 25.122 hybrid contribution 0.585 -0.233 -0.959 1.148 sum -23.364 -7.821 -1.025 24.660 Atomic orbital electron populations 1.22214 0.87736 1.01974 1.00395 1.60444 1.07499 1.13840 1.50366 1.20879 0.90992 0.89808 1.01120 1.19676 0.94533 1.02538 0.93408 1.20889 0.94119 1.00716 0.97139 1.21195 0.93821 1.00924 0.97759 1.18903 0.92234 0.97514 0.93134 1.18561 0.90795 1.05517 0.93816 1.21090 0.94243 1.00318 0.96681 1.21015 0.93339 1.01381 0.98367 1.20401 0.97709 0.91635 0.92216 1.18857 0.87521 0.98689 0.97476 1.20910 0.92295 0.90539 1.51403 0.90799 1.25006 0.98171 0.95636 0.94475 1.69901 1.13528 1.19728 1.50549 0.86797 0.80630 0.83389 0.78652 1.20149 1.21219 1.18922 1.21014 0.93330 1.01323 0.98378 1.21101 0.94245 1.00235 0.96709 1.21253 0.93951 1.00775 0.97759 1.20884 0.93769 0.99076 0.97412 0.91329 0.91657 0.96063 0.83891 0.90277 0.94496 0.86563 0.85746 0.86613 0.86075 0.95291 0.95739 0.92569 0.86051 0.86547 0.85674 0.86107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.70 60.07 0.64 0.81 16 2 N -0.69 -5.66 6.84 -122.42 -0.84 -6.50 16 3 C 0.10 0.84 5.81 -4.98 -0.03 0.82 16 4 C -0.10 -1.06 5.40 -104.56 -0.56 -1.62 16 5 C -0.11 -1.17 9.68 -39.63 -0.38 -1.56 16 6 C -0.12 -1.47 9.43 -39.25 -0.37 -1.84 16 7 C -0.02 -0.25 5.88 -104.89 -0.62 -0.86 16 8 C -0.09 -1.40 5.88 -104.90 -0.62 -2.02 16 9 C -0.11 -1.73 9.43 -39.25 -0.37 -2.10 16 10 C -0.12 -2.32 9.68 -39.63 -0.38 -2.70 16 11 C -0.02 -0.41 5.07 -104.56 -0.53 -0.94 16 12 C 0.01 0.28 4.17 -29.03 -0.12 0.16 16 13 C -0.51 -14.50 9.65 -34.44 -0.33 -14.83 16 14 H 0.07 2.29 7.98 -52.49 -0.42 1.87 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -27.42 13.96 55.43 0.77 -26.65 16 17 Si 0.88 21.23 27.47 -169.99 -4.67 16.57 16 18 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 21 C -0.12 -2.31 9.68 -39.63 -0.38 -2.70 16 22 C -0.11 -1.73 9.43 -39.26 -0.37 -2.10 16 23 C -0.12 -1.51 9.43 -39.25 -0.37 -1.88 16 24 C -0.09 -1.04 9.68 -39.63 -0.38 -1.42 16 25 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.02 0.12 8.14 -51.93 -0.42 -0.30 16 28 H 0.34 2.63 8.81 -39.29 -0.35 2.28 16 29 H 0.08 0.64 8.08 -51.93 -0.42 0.22 16 30 H 0.04 0.28 8.08 -51.93 -0.42 -0.14 16 31 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.12 1.39 6.21 -52.48 -0.33 1.06 16 33 H 0.12 1.58 6.21 -52.49 -0.33 1.25 16 34 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 35 H 0.03 0.68 7.14 -51.93 -0.37 0.31 16 36 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.12 2.19 8.06 -52.48 -0.42 1.76 16 39 H 0.12 1.60 6.21 -52.48 -0.33 1.28 16 40 H 0.13 1.43 6.21 -52.49 -0.33 1.11 16 41 H 0.12 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 340.89 15.07 5.14 5.14 Total: -1.00 -31.03 340.89 -10.67 -41.70 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.80 Total: 2.66 kcal Atomic # 6 Polarization: -27.64 SS G_CDS: -5.28 Total: -32.92 kcal Atomic # 7 Polarization: -33.08 SS G_CDS: -0.06 Total: -33.15 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.03 -10.67 -41.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242992236.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.217 kcal (2) G-P(sol) polarization free energy of solvation -31.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds