Wall clock time and date at job start Tue Mar 31 2020 05:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46908 * 110.99928 * 2 1 4 4 C 1.50699 * 109.47216 * 180.02562 * 3 2 1 5 5 C 1.38314 * 119.88004 * 89.99660 * 4 3 2 6 6 C 1.38016 * 120.12313 * 180.02562 * 5 4 3 7 7 C 1.39337 * 119.87765 * 359.97438 * 6 5 4 8 8 C 1.48391 * 120.12305 * 180.02562 * 7 6 5 9 9 C 1.39351 * 120.11890 * 359.97438 * 8 7 6 10 10 C 1.37999 * 119.87395 * 179.69638 * 9 8 7 11 11 C 1.38343 * 120.12404 * 0.26340 * 10 9 8 12 12 C 1.38297 * 120.24329 * 0.02562 * 11 10 9 13 13 C 1.50696 * 119.94121 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.46787 * 89.99710 * 13 12 11 15 15 H 1.07995 * 120.00094 * 0.02562 * 14 13 12 16 16 C 1.37878 * 119.99612 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99950 * 180.02562 * 16 14 13 18 18 Si 1.86798 * 120.00568 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47233 * 89.99908 * 18 16 14 20 20 H 1.48499 * 109.47545 * 210.00434 * 18 16 14 21 21 H 1.48500 * 109.46803 * 330.00213 * 18 16 14 22 22 C 1.38038 * 120.11991 * 0.02562 * 12 11 10 23 23 C 1.39342 * 119.75688 * 0.27601 * 7 6 5 24 24 C 1.38023 * 119.87610 * 359.44698 * 23 7 6 25 25 H 1.09004 * 109.46903 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47752 * 300.00231 * 1 2 3 27 27 H 1.09001 * 109.47162 * 60.00769 * 1 2 3 28 28 H 1.00893 * 111.00489 * 236.04522 * 2 1 3 29 29 H 1.08998 * 109.47223 * 59.99609 * 3 2 1 30 30 H 1.08998 * 109.46576 * 299.99851 * 3 2 1 31 31 H 1.08005 * 119.94010 * 359.97438 * 5 4 3 32 32 H 1.08003 * 120.06377 * 180.02562 * 6 5 4 33 33 H 1.08002 * 120.06494 * 359.97438 * 9 8 7 34 34 H 1.08008 * 119.93963 * 180.27617 * 10 9 8 35 35 H 1.07998 * 119.87774 * 179.97438 * 11 10 9 36 36 H 1.08999 * 109.47622 * 210.00037 * 13 12 11 37 37 H 1.09007 * 109.47104 * 330.00517 * 13 12 11 38 38 H 0.96998 * 120.00617 * 179.97438 * 17 16 14 39 39 H 1.08007 * 120.06105 * 179.97438 * 22 12 11 40 40 H 1.07996 * 120.06065 * 179.70625 * 23 7 6 41 41 H 1.07995 * 119.93945 * 180.27359 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 3.5018 1.3314 -0.0006 5 6 4.1902 1.3131 -1.2002 6 6 5.5698 1.2758 -1.2066 7 6 6.2693 1.2570 -0.0017 8 6 7.7527 1.2175 -0.0023 9 6 8.4512 1.1984 -1.2079 10 6 9.8308 1.1680 -1.2026 11 6 10.5203 1.1509 -0.0033 12 6 9.8319 1.1637 1.1961 13 6 10.5898 1.1443 2.4985 14 6 10.8738 2.5584 2.9354 15 1 10.5386 3.3880 2.3308 16 6 11.5615 2.7928 4.1072 17 7 11.8090 4.0268 4.4888 18 14 12.1420 1.3579 5.1528 19 1 13.5052 0.9531 4.7250 20 1 12.1719 1.7657 6.5804 21 1 11.2102 0.2139 4.9843 22 6 8.4519 1.1930 1.2025 23 6 5.5706 1.2703 1.2038 24 6 4.1911 1.3134 1.1985 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 1.8306 -0.5261 -0.7813 29 1 1.6458 1.8949 0.8899 30 1 1.6459 1.8947 -0.8900 31 1 3.6470 1.3273 -2.1336 32 1 6.1063 1.2620 -2.1439 33 1 7.9140 1.2120 -2.1448 34 1 10.3734 1.1577 -2.1364 35 1 11.6000 1.1267 -0.0037 36 1 9.9923 0.6420 3.2593 37 1 11.5303 0.6099 2.3637 38 1 12.2925 4.1919 5.3134 39 1 7.9153 1.2025 2.1398 40 1 6.1077 1.2510 2.1406 41 1 3.6487 1.3282 2.1323 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242992717.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:04 Heat of formation + Delta-G solvation = 38.785294 kcal Electronic energy + Delta-G solvation = -20168.132868 eV Core-core repulsion = 17204.882346 eV Total energy + Delta-G solvation = -2963.250522 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.76343 -38.35988 -36.17455 -33.64095 -32.45594 -31.52031 -30.81694 -29.54887 -27.62092 -26.40775 -23.95019 -23.48880 -22.41901 -21.96832 -20.68211 -19.65226 -17.12008 -16.78612 -16.18851 -15.60186 -15.49836 -14.96391 -14.78820 -14.27605 -14.08830 -13.83312 -13.72610 -13.49259 -13.00338 -12.78235 -12.61481 -12.33711 -12.24453 -12.12518 -11.83714 -11.66524 -11.33796 -11.15091 -10.89800 -10.61020 -10.34917 -10.10959 -9.90123 -9.42493 -9.25162 -8.87539 -8.76787 -8.59681 -8.02729 -7.58553 -6.08632 -4.08069 0.92789 1.49250 2.01583 2.25150 3.27669 3.35710 3.38397 3.73537 4.17433 4.40239 4.52030 4.64498 4.74802 4.90073 4.99242 5.04753 5.08769 5.18993 5.23539 5.35888 5.41559 5.46225 5.53332 5.53976 5.64243 5.80688 5.89927 6.07514 6.08872 6.16596 6.30292 6.54064 6.56655 6.57713 6.61534 6.66644 6.90419 6.98078 6.99552 7.02248 7.07536 7.13304 7.55030 7.55200 7.69266 8.47989 8.96690 9.51362 11.04282 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021150 B = 0.003365 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.535048 B = 8318.383888 C = 9186.745659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.691 5.691 3 C 0.100 3.900 4 C -0.098 4.098 5 C -0.114 4.114 6 C -0.117 4.117 7 C -0.024 4.024 8 C -0.060 4.060 9 C -0.133 4.133 10 C -0.122 4.122 11 C -0.116 4.116 12 C -0.029 4.029 13 C 0.014 3.986 14 C -0.513 4.513 15 H 0.074 0.926 16 C 0.069 3.931 17 N -0.899 5.899 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.264 1.264 22 C -0.106 4.106 23 C -0.113 4.113 24 C -0.093 4.093 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.020 0.980 28 H 0.343 0.657 29 H 0.080 0.920 30 H 0.037 0.963 31 H 0.116 0.884 32 H 0.124 0.876 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.028 0.972 37 H 0.024 0.976 38 H 0.264 0.736 39 H 0.122 0.878 40 H 0.130 0.870 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.874 -7.808 -11.831 22.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.321 5.321 3 C -0.028 4.028 4 C -0.098 4.098 5 C -0.132 4.132 6 C -0.135 4.135 7 C -0.024 4.024 8 C -0.060 4.060 9 C -0.151 4.151 10 C -0.140 4.140 11 C -0.134 4.134 12 C -0.029 4.029 13 C -0.024 4.024 14 C -0.551 4.551 15 H 0.092 0.908 16 C -0.132 4.132 17 N -0.538 5.538 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.189 1.189 22 C -0.124 4.124 23 C -0.130 4.130 24 C -0.112 4.112 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.039 0.961 28 H 0.161 0.839 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.134 0.866 32 H 0.141 0.859 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.046 0.954 37 H 0.043 0.957 38 H 0.074 0.926 39 H 0.140 0.860 40 H 0.147 0.853 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -17.770 -7.761 -10.996 22.292 hybrid contribution 0.250 -0.215 -0.305 0.449 sum -17.520 -7.977 -11.301 22.322 Atomic orbital electron populations 1.22214 0.87745 1.01950 1.00395 1.60433 1.07486 1.13858 1.50336 1.20887 0.91000 0.89783 1.01151 1.19686 0.94526 1.02220 0.93411 1.20863 0.94098 1.01163 0.97089 1.21158 0.93798 1.00914 0.97590 1.18910 0.92199 0.98142 0.93196 1.18693 0.90928 1.02544 0.93807 1.20944 0.94169 1.03327 0.96616 1.20965 0.93974 1.01325 0.97760 1.21164 1.00027 1.00294 0.91898 1.20222 0.93267 0.92963 0.96446 1.18827 0.94837 0.98678 0.90012 1.20923 1.36308 0.90499 1.07388 0.90814 1.25001 0.95404 0.95556 0.97282 1.69899 1.41032 1.19229 1.23612 0.86809 0.79669 0.83306 0.79764 1.20154 1.21230 1.18892 1.21133 0.94030 1.00365 0.96825 1.21369 0.94028 0.99581 0.98059 1.20919 0.93784 0.98963 0.97488 0.91349 0.91623 0.96106 0.83938 0.90192 0.94523 0.86611 0.85857 0.86766 0.86680 0.86232 0.95365 0.95745 0.92580 0.86024 0.85253 0.85959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.70 60.06 0.64 0.82 16 2 N -0.69 -6.12 6.84 -122.42 -0.84 -6.96 16 3 C 0.10 0.92 5.81 -4.97 -0.03 0.89 16 4 C -0.10 -1.11 5.40 -104.56 -0.56 -1.67 16 5 C -0.11 -1.27 9.68 -39.63 -0.38 -1.65 16 6 C -0.12 -1.49 9.43 -39.25 -0.37 -1.86 16 7 C -0.02 -0.37 5.88 -104.90 -0.62 -0.98 16 8 C -0.06 -1.02 5.88 -104.90 -0.62 -1.64 16 9 C -0.13 -2.08 9.43 -39.26 -0.37 -2.45 16 10 C -0.12 -1.97 10.03 -39.63 -0.40 -2.37 16 11 C -0.12 -2.19 9.69 -39.52 -0.38 -2.57 16 12 C -0.03 -0.61 5.06 -104.68 -0.53 -1.14 16 13 C 0.01 0.32 4.17 -29.03 -0.12 0.20 16 14 C -0.51 -14.53 9.65 -34.44 -0.33 -14.87 16 15 H 0.07 2.30 7.98 -52.49 -0.42 1.88 16 16 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 17 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 18 Si 0.88 21.30 27.47 -169.99 -4.67 16.63 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 21 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 22 C -0.11 -2.04 9.08 -39.25 -0.36 -2.40 16 23 C -0.11 -1.63 9.43 -39.25 -0.37 -2.00 16 24 C -0.09 -1.17 9.68 -39.63 -0.38 -1.56 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.02 0.13 8.14 -51.93 -0.42 -0.30 16 28 H 0.34 2.81 8.81 -39.30 -0.35 2.46 16 29 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 30 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 31 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 32 H 0.12 1.37 6.21 -52.48 -0.33 1.04 16 33 H 0.11 1.45 6.21 -52.49 -0.33 1.13 16 34 H 0.12 1.51 8.06 -52.48 -0.42 1.08 16 35 H 0.12 2.15 8.06 -52.49 -0.42 1.73 16 36 H 0.03 0.66 7.14 -51.93 -0.37 0.29 16 37 H 0.02 0.57 7.51 -51.92 -0.39 0.18 16 38 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 39 H 0.12 2.27 6.21 -52.48 -0.33 1.94 16 40 H 0.13 1.86 6.21 -52.49 -0.33 1.53 16 41 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 340.89 15.07 5.14 5.14 Total: -1.00 -31.16 340.89 -10.67 -41.83 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -5.80 Total: 3.44 kcal Atomic # 6 Polarization: -28.05 SS G_CDS: -5.28 Total: -33.33 kcal Atomic # 7 Polarization: -33.65 SS G_CDS: -0.06 Total: -33.71 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -4.67 Total: 16.63 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -31.16 -10.67 -41.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242992717.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.616 kcal (2) G-P(sol) polarization free energy of solvation -31.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds