Wall clock time and date at job start Tue Mar 31 2020 05:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46899 * 110.99957 * 2 1 4 4 C 1.50696 * 109.47026 * 180.02562 * 3 2 1 5 5 C 1.38342 * 119.94021 * 90.00157 * 4 3 2 6 6 C 1.38302 * 120.24234 * 179.97438 * 5 4 3 7 7 C 1.38043 * 120.12264 * 0.03635 * 6 5 4 8 8 C 1.39315 * 119.87647 * 0.23931 * 7 6 5 9 9 C 1.48391 * 120.12018 * 179.71882 * 8 7 6 10 10 C 1.39342 * 120.11975 * 179.72436 * 9 8 7 11 11 C 1.38014 * 119.87409 * 179.70329 * 10 9 8 12 12 C 1.38323 * 120.12303 * 0.59650 * 11 10 9 13 13 C 1.50699 * 119.87719 * 179.70238 * 12 11 10 14 14 C 1.50698 * 109.46980 * 269.97471 * 13 12 11 15 15 H 1.08001 * 120.00271 * 0.02562 * 14 13 12 16 16 C 1.37881 * 120.00061 * 179.97438 * 14 13 12 17 17 N 1.31514 * 119.99870 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00120 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47162 * 90.00161 * 18 16 14 20 20 H 1.48496 * 109.47340 * 210.00352 * 18 16 14 21 21 H 1.48507 * 109.47189 * 330.00410 * 18 16 14 22 22 C 1.38323 * 120.24064 * 359.68019 * 12 11 10 23 23 C 1.38008 * 120.12334 * 0.02562 * 22 12 11 24 24 C 1.38002 * 119.93805 * 269.97401 * 4 3 2 25 25 H 1.09002 * 109.47754 * 59.99960 * 1 2 3 26 26 H 1.09008 * 109.47034 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46848 * 299.99324 * 1 2 3 28 28 H 1.00896 * 110.99933 * 123.95604 * 2 1 3 29 29 H 1.08999 * 109.47244 * 60.00037 * 3 2 1 30 30 H 1.08999 * 109.46989 * 300.00228 * 3 2 1 31 31 H 1.07998 * 119.88012 * 359.97438 * 5 4 3 32 32 H 1.07999 * 119.93894 * 180.02562 * 6 5 4 33 33 H 1.08002 * 120.05911 * 179.97438 * 7 6 5 34 34 H 1.08005 * 120.06032 * 359.97438 * 10 9 8 35 35 H 1.08004 * 119.93999 * 180.27361 * 11 10 9 36 36 H 1.08998 * 109.47241 * 29.97837 * 13 12 11 37 37 H 1.08998 * 109.47115 * 149.97833 * 13 12 11 38 38 H 0.96997 * 119.99712 * 179.97438 * 17 16 14 39 39 H 1.08004 * 119.93253 * 180.02562 * 22 12 11 40 40 H 1.08003 * 120.06190 * 180.02562 * 23 22 12 41 41 H 1.07998 * 120.05930 * 0.02562 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5018 1.3312 -0.0006 5 6 4.1915 1.3130 -1.1997 6 6 5.5741 1.2766 -1.2076 7 6 6.2734 1.2575 -0.0176 8 6 5.5838 1.2699 1.1929 9 6 6.3299 1.2432 2.4753 10 6 5.6403 1.2614 3.6860 11 6 6.3391 1.2302 4.8757 12 6 7.7218 1.1934 4.8678 13 6 8.4795 1.1663 6.1702 14 6 8.7704 2.5775 6.6116 15 1 8.4394 3.4107 6.0095 16 6 9.4583 2.8050 7.7847 17 7 9.8610 1.7903 8.5182 18 14 9.8183 4.5542 8.3322 19 1 8.7038 5.0464 9.1813 20 1 11.0822 4.5789 9.1113 21 1 9.9549 5.4281 7.1393 22 6 8.4116 1.1810 3.6689 23 6 7.7227 1.2058 2.4733 24 6 4.1908 1.3132 1.1949 25 1 -0.3635 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5137 0.8901 28 1 1.8306 -0.5261 0.7813 29 1 1.6459 1.8948 0.8900 30 1 1.6459 1.8948 -0.8900 31 1 3.6484 1.3273 -2.1331 32 1 6.1076 1.2630 -2.1465 33 1 7.3530 1.2287 -0.0249 34 1 4.5608 1.2954 3.6933 35 1 5.8056 1.2398 5.8147 36 1 7.8794 0.6645 6.9293 37 1 9.4173 0.6277 6.0338 38 1 10.3452 1.9504 9.3432 39 1 9.4912 1.1518 3.6685 40 1 8.2623 1.1957 1.5377 41 1 3.6514 1.3274 2.1304 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242997071.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:05 Heat of formation + Delta-G solvation = 18.539527 kcal Electronic energy + Delta-G solvation = -20100.615831 eV Core-core repulsion = 17136.487386 eV Total energy + Delta-G solvation = -2964.128445 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.87310 -39.53109 -36.93524 -35.55973 -33.87215 -32.56975 -31.65756 -31.27401 -28.42762 -27.56299 -25.44856 -24.68749 -23.73277 -23.08959 -21.89242 -21.07871 -18.55766 -18.21239 -17.04516 -16.77424 -16.62470 -16.28361 -15.84750 -15.55143 -15.40249 -14.94049 -14.72038 -14.59155 -14.28526 -14.14173 -13.92916 -13.36886 -13.29261 -13.24777 -12.97786 -12.90879 -12.62901 -12.57140 -12.43101 -12.10331 -11.93008 -11.60123 -11.46712 -11.39324 -10.62718 -10.31155 -9.80426 -9.77701 -9.37766 -8.76657 -8.20852 -6.36013 -0.13685 0.46658 0.57851 1.08556 1.38564 1.39271 1.51051 2.37824 2.73125 3.08214 3.17849 3.48893 3.70533 3.79512 3.92665 4.05117 4.17208 4.25844 4.37647 4.41133 4.45237 4.53903 4.55778 4.64191 4.70105 4.70964 4.81964 5.00603 5.05151 5.05404 5.16885 5.20627 5.32744 5.36145 5.42069 5.52620 5.63028 5.69125 5.73551 5.86029 5.98185 6.05179 6.08092 6.12990 6.23446 6.37014 6.76516 7.32633 8.86917 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.025764 B = 0.003020 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.545451 B = 9269.824358 C = 9725.138582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.701 5.701 3 C 0.102 3.898 4 C -0.087 4.087 5 C -0.106 4.106 6 C -0.118 4.118 7 C -0.124 4.124 8 C -0.048 4.048 9 C -0.076 4.076 10 C -0.106 4.106 11 C -0.134 4.134 12 C -0.060 4.060 13 C 0.055 3.945 14 C -0.529 4.529 15 H 0.053 0.947 16 C 0.004 3.996 17 N -0.930 5.930 18 Si 0.966 3.034 19 H -0.271 1.271 20 H -0.278 1.278 21 H -0.266 1.266 22 C -0.134 4.134 23 C -0.105 4.105 24 C -0.117 4.117 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.025 0.975 28 H 0.344 0.656 29 H 0.041 0.959 30 H 0.090 0.910 31 H 0.140 0.860 32 H 0.147 0.853 33 H 0.133 0.867 34 H 0.142 0.858 35 H 0.116 0.884 36 H 0.004 0.996 37 H 0.004 0.996 38 H 0.266 0.734 39 H 0.117 0.883 40 H 0.145 0.855 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.538 -1.417 -20.480 25.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.332 5.332 3 C -0.027 4.027 4 C -0.088 4.088 5 C -0.124 4.124 6 C -0.136 4.136 7 C -0.142 4.142 8 C -0.048 4.048 9 C -0.076 4.076 10 C -0.123 4.123 11 C -0.152 4.152 12 C -0.060 4.060 13 C 0.018 3.982 14 C -0.567 4.567 15 H 0.071 0.929 16 C -0.194 4.194 17 N -0.570 5.570 18 Si 0.790 3.210 19 H -0.196 1.196 20 H -0.203 1.203 21 H -0.191 1.191 22 C -0.152 4.152 23 C -0.123 4.123 24 C -0.136 4.136 25 H 0.089 0.911 26 H 0.094 0.906 27 H 0.044 0.956 28 H 0.161 0.839 29 H 0.059 0.941 30 H 0.108 0.892 31 H 0.158 0.842 32 H 0.165 0.835 33 H 0.151 0.849 34 H 0.159 0.841 35 H 0.134 0.866 36 H 0.022 0.978 37 H 0.023 0.977 38 H 0.075 0.925 39 H 0.135 0.865 40 H 0.163 0.837 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.430 -1.532 -21.011 26.113 hybrid contribution 0.456 0.865 1.987 2.214 sum -14.974 -0.668 -19.024 24.220 Atomic orbital electron populations 1.22259 0.86567 1.02648 1.00828 1.60472 1.08689 1.13494 1.50511 1.20891 0.89591 0.90317 1.01889 1.19823 0.95695 1.00390 0.92880 1.21304 0.94245 0.98858 0.98020 1.21362 0.94492 0.99437 0.98304 1.21470 1.00758 1.00182 0.91783 1.18810 0.93319 1.00748 0.91874 1.18860 0.93103 1.03139 0.92527 1.21315 1.00274 0.99680 0.91078 1.21050 0.93571 1.02104 0.98505 1.20502 0.94601 0.94870 0.96053 1.18125 0.93855 0.96377 0.89819 1.21356 1.36066 0.92405 1.06851 0.92861 1.25935 0.95282 1.01701 0.96465 1.70078 1.39282 1.32612 1.14986 0.85433 0.77902 0.79205 0.78458 1.19633 1.20346 1.19072 1.21068 1.00041 1.02049 0.92068 1.21351 0.93540 0.99459 0.97906 1.21220 0.93068 1.00857 0.98411 0.91148 0.90615 0.95627 0.83891 0.94062 0.89215 0.84242 0.83500 0.84924 0.84068 0.86566 0.97795 0.97750 0.92501 0.86473 0.83708 0.85633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.70 127.69 1.37 1.67 16 2 N -0.70 -10.87 6.84 -541.23 -3.70 -14.57 16 3 C 0.10 1.58 5.81 85.56 0.50 2.08 16 4 C -0.09 -1.70 5.39 -19.90 -0.11 -1.80 16 5 C -0.11 -1.90 9.69 22.31 0.22 -1.69 16 6 C -0.12 -2.17 10.03 22.24 0.22 -1.95 16 7 C -0.12 -2.79 9.43 22.48 0.21 -2.58 16 8 C -0.05 -1.24 5.88 -20.04 -0.12 -1.36 16 9 C -0.08 -2.40 5.88 -20.04 -0.12 -2.51 16 10 C -0.11 -3.47 9.43 22.48 0.21 -3.26 16 11 C -0.13 -5.34 9.68 22.24 0.22 -5.13 16 12 C -0.06 -2.72 5.07 -19.82 -0.10 -2.82 16 13 C 0.06 3.01 5.10 29.10 0.15 3.15 16 14 C -0.53 -30.64 9.09 25.60 0.23 -30.41 16 15 H 0.05 3.05 7.74 -2.91 -0.02 3.03 16 16 C 0.00 0.25 5.46 84.66 0.46 0.72 16 17 N -0.93 -56.42 13.29 21.45 0.28 -56.14 16 18 Si 0.97 44.62 29.54 68.60 2.03 46.64 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 C -0.13 -5.34 9.68 22.24 0.22 -5.12 16 23 C -0.10 -3.43 9.43 22.48 0.21 -3.22 16 24 C -0.12 -2.68 9.08 22.48 0.20 -2.48 16 25 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.08 0.77 8.14 -2.38 -0.02 0.75 16 27 H 0.03 0.28 8.14 -2.39 -0.02 0.26 16 28 H 0.34 5.39 8.81 -89.70 -0.79 4.60 16 29 H 0.04 0.63 8.08 -2.39 -0.02 0.61 16 30 H 0.09 1.22 8.08 -2.39 -0.02 1.20 16 31 H 0.14 1.92 8.06 -2.91 -0.02 1.89 16 32 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 33 H 0.13 2.66 6.21 -2.91 -0.02 2.64 16 34 H 0.14 3.72 6.21 -2.91 -0.02 3.71 16 35 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 36 H 0.00 0.22 8.08 -2.39 -0.02 0.20 16 37 H 0.00 0.24 8.08 -2.39 -0.02 0.22 16 38 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 39 H 0.12 4.58 8.06 -2.91 -0.02 4.56 16 40 H 0.15 3.76 6.21 -2.91 -0.02 3.75 16 41 H 0.13 2.65 6.21 -2.91 -0.02 2.63 16 Total: -1.00 -66.41 344.50 2.82 -63.59 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.24 Total: 17.18 kcal Atomic # 6 Polarization: -60.68 SS G_CDS: 3.97 Total: -56.71 kcal Atomic # 7 Polarization: -67.29 SS G_CDS: -3.42 Total: -70.71 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.64 kcal Total: -66.41 2.82 -63.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242997071.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.129 kcal (2) G-P(sol) polarization free energy of solvation -66.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds