Wall clock time and date at job start Tue Mar 31 2020 05:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47023 * 2 1 4 4 C 1.53004 * 109.47303 * 240.00250 * 2 1 3 5 5 C 1.50694 * 109.47540 * 119.99935 * 2 1 3 6 6 C 1.38009 * 119.56133 * 75.28032 * 5 2 1 7 7 C 1.39736 * 119.02380 * 180.29774 * 6 5 2 8 8 C 1.48391 * 120.90483 * 179.70694 * 7 6 5 9 9 C 1.39736 * 120.00015 * 359.44608 * 8 7 6 10 10 C 1.38383 * 120.37548 * 180.27573 * 9 8 7 11 11 C 1.37722 * 120.38499 * 359.97438 * 10 9 8 12 12 C 1.40746 * 119.99257 * 0.02562 * 11 10 9 13 13 C 1.41421 * 120.18989 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00165 * 204.48488 * 13 12 11 15 15 C 1.39933 * 119.99978 * 24.48322 * 13 12 11 16 16 N 1.30829 * 120.00079 * 17.89614 * 15 13 12 17 17 Si 1.86797 * 119.99991 * 197.90126 * 15 13 12 18 18 H 1.48501 * 109.47248 * 59.99755 * 17 15 13 19 19 H 1.48500 * 109.46930 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47254 * 299.99908 * 17 15 13 21 21 C 1.38746 * 120.00006 * 179.72093 * 8 7 6 22 22 C 1.39774 * 118.19051 * 359.43937 * 7 6 5 23 23 C 1.37968 * 119.02365 * 0.27065 * 22 7 6 24 24 N 1.31903 * 119.56448 * 255.00352 * 5 2 1 25 25 H 1.09003 * 109.47405 * 299.99860 * 1 2 3 26 26 H 1.09006 * 109.47038 * 60.00027 * 1 2 3 27 27 H 1.09002 * 109.46740 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47018 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47143 * 299.99963 * 3 2 1 30 30 H 1.08996 * 109.46571 * 59.99778 * 3 2 1 31 31 H 1.08994 * 109.47007 * 299.99666 * 4 2 1 32 32 H 1.08996 * 109.47256 * 59.99797 * 4 2 1 33 33 H 1.08999 * 109.47073 * 179.97438 * 4 2 1 34 34 H 1.08007 * 120.48922 * 0.02562 * 6 5 2 35 35 H 1.08003 * 119.80763 * 0.25566 * 9 8 7 36 36 H 1.08002 * 119.80876 * 179.97438 * 10 9 8 37 37 H 1.07996 * 120.00485 * 179.97438 * 11 10 9 38 38 H 0.96999 * 120.00064 * 180.02562 * 16 15 13 39 39 H 1.08002 * 120.18785 * 359.75219 * 21 8 7 40 40 H 1.07999 * 120.48806 * 180.29002 * 22 7 6 41 41 H 1.07990 * 119.56214 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7103 1.2304 6 6 1.9718 -2.0876 1.2939 7 6 2.4350 -2.7344 2.4427 8 6 2.3836 -4.2129 2.5581 9 6 1.8562 -4.9773 1.5140 10 6 1.7993 -6.3562 1.6157 11 6 2.2623 -6.9910 2.7469 12 6 2.7967 -6.2365 3.8081 13 6 3.2738 -6.8841 4.9713 14 1 3.3103 -6.3508 5.9097 15 6 3.6986 -8.2158 4.9064 16 7 3.9894 -8.7540 3.7500 17 14 3.8504 -9.2250 6.4709 18 1 2.5270 -9.3028 7.1402 19 1 4.3151 -10.5945 6.1334 20 1 4.8292 -8.5803 7.3829 21 6 2.8541 -4.8360 3.7050 22 6 2.9533 -1.9511 3.4778 23 6 2.9824 -0.5798 3.3294 24 7 2.5292 -0.0079 2.2302 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6765 1.9563 0.8900 31 1 1.6768 -1.7488 -1.2493 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2495 34 1 1.5682 -2.6570 0.4695 35 1 1.4906 -4.4890 0.6227 36 1 1.3894 -6.9380 0.8034 37 1 2.2145 -8.0674 2.8199 38 1 4.2834 -9.6773 3.7049 39 1 3.2620 -4.2482 4.5140 40 1 3.3258 -2.4126 4.3804 41 1 3.3806 0.0338 4.1239 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244020221.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:15 Heat of formation + Delta-G solvation = 28.833251 kcal Electronic energy + Delta-G solvation = -20926.531004 eV Core-core repulsion = 17962.848929 eV Total energy + Delta-G solvation = -2963.682075 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.19990 -37.68999 -36.36695 -34.05715 -32.40825 -30.46821 -29.72126 -28.62603 -27.26301 -27.11552 -25.46759 -23.46499 -23.06955 -20.82491 -20.42649 -18.96684 -17.33253 -16.27341 -15.83096 -15.34716 -15.24657 -14.46237 -14.35210 -14.13301 -13.84535 -13.47327 -13.24858 -13.15091 -12.72648 -12.27278 -12.16748 -11.96431 -11.91838 -11.72837 -11.61161 -11.33006 -11.18929 -10.98110 -10.92030 -10.82548 -10.63921 -10.50414 -9.88376 -9.56163 -9.49987 -9.13763 -9.04457 -8.61119 -7.61544 -7.22224 -6.84761 -4.46190 1.38469 1.51423 2.72411 3.01063 3.02655 3.05074 3.18653 3.86874 4.20132 4.37037 4.59556 4.75776 5.04895 5.09312 5.26478 5.28391 5.48905 5.56453 5.59059 5.60812 5.69331 5.79835 5.83355 5.89426 5.93570 5.96615 6.08705 6.15142 6.27339 6.31502 6.35891 6.38734 6.52313 6.61826 6.79669 6.92511 7.07565 7.16710 7.23475 7.43272 7.71504 7.89621 7.92760 8.13977 8.35622 8.50112 8.77923 8.82582 10.10392 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.032594 B = 0.003658 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.858142 B = 7651.669598 C = 8250.237594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.017 4.017 3 C -0.124 4.124 4 C -0.141 4.141 5 C 0.134 3.866 6 C -0.171 4.171 7 C 0.035 3.965 8 C -0.051 4.051 9 C -0.214 4.214 10 C -0.109 4.109 11 C -0.150 4.150 12 C 0.106 3.894 13 C -0.464 4.464 14 H 0.078 0.922 15 C 0.077 3.923 16 N -0.794 5.794 17 Si 0.909 3.091 18 H -0.263 1.263 19 H -0.278 1.278 20 H -0.265 1.265 21 C -0.196 4.196 22 C -0.179 4.179 23 C 0.096 3.904 24 N -0.497 5.497 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.132 0.868 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.120 0.880 38 H 0.282 0.718 39 H 0.098 0.902 40 H 0.135 0.865 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.469 10.978 -5.100 12.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.018 4.018 3 C -0.181 4.181 4 C -0.199 4.199 5 C -0.003 4.003 6 C -0.190 4.190 7 C 0.027 3.973 8 C -0.051 4.051 9 C -0.234 4.234 10 C -0.127 4.127 11 C -0.169 4.169 12 C 0.103 3.897 13 C -0.494 4.494 14 H 0.097 0.903 15 C -0.141 4.141 16 N -0.419 5.419 17 Si 0.733 3.267 18 H -0.188 1.188 19 H -0.203 1.203 20 H -0.189 1.189 21 C -0.216 4.216 22 C -0.199 4.199 23 C -0.060 4.060 24 N -0.207 5.207 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.150 0.850 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.138 0.862 38 H 0.093 0.907 39 H 0.116 0.884 40 H 0.153 0.847 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.327 11.672 -5.265 13.230 hybrid contribution 0.224 -1.624 0.826 1.835 sum -3.103 10.048 -4.439 11.415 Atomic orbital electron populations 1.21861 0.93495 1.02199 1.01860 1.19434 0.95572 0.95708 0.91111 1.21643 1.01079 0.94151 1.01243 1.21941 1.01389 1.00476 0.96088 1.20896 0.95061 0.90329 0.94056 1.21976 1.03167 0.94751 0.99125 1.19521 0.91573 0.94059 0.92155 1.18247 1.02097 0.88677 0.96068 1.20416 1.10626 0.93725 0.98587 1.20641 1.00678 0.93760 0.97642 1.21470 1.00937 1.00154 0.94358 1.17537 0.88777 0.90513 0.92852 1.19534 1.37721 0.96084 0.96045 0.90347 1.25900 0.92553 0.98116 0.97562 1.69802 1.31164 1.14721 1.26196 0.86353 0.79788 0.78559 0.81977 1.18770 1.20295 1.18946 1.21105 1.08267 0.94935 0.97259 1.22271 1.02393 0.94743 1.00505 1.22515 0.96217 0.92392 0.94870 1.67348 1.11521 1.40936 1.00898 0.92494 0.92142 0.92338 0.92740 0.93317 0.91774 0.92070 0.92118 0.92442 0.84997 0.89016 0.88972 0.86188 0.90693 0.88364 0.84717 0.83330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.41 37.16 0.31 -1.20 16 2 C -0.02 -0.22 0.87 -155.66 -0.14 -0.35 16 3 C -0.12 -1.42 7.81 37.16 0.29 -1.13 16 4 C -0.14 -1.58 8.08 37.16 0.30 -1.28 16 5 C 0.13 2.09 5.56 -82.65 -0.46 1.63 16 6 C -0.17 -2.90 8.47 -39.11 -0.33 -3.23 16 7 C 0.03 0.66 5.91 -104.58 -0.62 0.04 16 8 C -0.05 -1.12 5.87 -104.97 -0.62 -1.73 16 9 C -0.21 -4.63 9.46 -38.97 -0.37 -5.00 16 10 C -0.11 -2.47 10.01 -39.72 -0.40 -2.86 16 11 C -0.15 -3.77 8.69 -38.82 -0.34 -4.11 16 12 C 0.11 2.73 5.57 -106.87 -0.60 2.14 16 13 C -0.46 -11.97 9.05 -37.74 -0.34 -12.31 16 14 H 0.08 1.93 7.91 -52.49 -0.42 1.52 16 15 C 0.08 1.87 5.14 -17.34 -0.09 1.78 16 16 N -0.79 -20.00 10.96 55.55 0.61 -19.39 16 17 Si 0.91 18.19 29.59 -169.99 -5.03 13.16 16 18 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 19 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 20 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 21 C -0.20 -4.66 9.19 -38.52 -0.35 -5.01 16 22 C -0.18 -3.10 9.50 -39.11 -0.37 -3.47 16 23 C 0.10 1.49 11.17 -17.60 -0.20 1.29 16 24 N -0.50 -8.02 9.01 -9.56 -0.09 -8.11 16 25 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.66 8.09 -51.93 -0.42 0.24 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.78 7.85 -51.93 -0.41 0.37 16 31 H 0.06 0.69 6.69 -51.93 -0.35 0.34 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.13 2.10 4.98 -52.48 -0.26 1.84 16 35 H 0.09 1.74 6.27 -52.48 -0.33 1.41 16 36 H 0.09 1.85 8.06 -52.49 -0.42 1.42 16 37 H 0.12 3.11 6.15 -52.49 -0.32 2.78 16 38 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 39 H 0.10 2.18 6.28 -52.49 -0.33 1.85 16 40 H 0.14 2.22 6.33 -52.49 -0.33 1.89 16 41 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 LS Contribution 333.44 15.07 5.02 5.02 Total: -1.00 -27.10 333.44 -9.48 -36.58 By element: Atomic # 1 Polarization: 13.23 SS G_CDS: -5.68 Total: 7.54 kcal Atomic # 6 Polarization: -30.50 SS G_CDS: -4.31 Total: -34.81 kcal Atomic # 7 Polarization: -28.02 SS G_CDS: 0.52 Total: -27.49 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.16 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.10 -9.48 -36.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244020221.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.409 kcal (2) G-P(sol) polarization free energy of solvation -27.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds