Wall clock time and date at job start Tue Mar 31 2020 05:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47023 * 2 1 4 4 C 1.53004 * 109.47303 * 240.00250 * 2 1 3 5 5 C 1.50694 * 109.47540 * 119.99935 * 2 1 3 6 6 C 1.38009 * 119.56133 * 75.28032 * 5 2 1 7 7 C 1.39736 * 119.02380 * 180.29774 * 6 5 2 8 8 C 1.48391 * 120.90483 * 179.70694 * 7 6 5 9 9 C 1.39736 * 120.00015 * 359.44608 * 8 7 6 10 10 C 1.38383 * 120.37548 * 180.27573 * 9 8 7 11 11 C 1.37722 * 120.38499 * 359.97438 * 10 9 8 12 12 C 1.40746 * 119.99257 * 0.02562 * 11 10 9 13 13 C 1.41421 * 120.18989 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00165 * 204.48488 * 13 12 11 15 15 C 1.39933 * 119.99978 * 24.48322 * 13 12 11 16 16 N 1.30829 * 120.00079 * 17.89614 * 15 13 12 17 17 Si 1.86797 * 119.99991 * 197.90126 * 15 13 12 18 18 H 1.48501 * 109.47248 * 59.99755 * 17 15 13 19 19 H 1.48500 * 109.46930 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47254 * 299.99908 * 17 15 13 21 21 C 1.38746 * 120.00006 * 179.72093 * 8 7 6 22 22 C 1.39774 * 118.19051 * 359.43937 * 7 6 5 23 23 C 1.37968 * 119.02365 * 0.27065 * 22 7 6 24 24 N 1.31903 * 119.56448 * 255.00352 * 5 2 1 25 25 H 1.09003 * 109.47405 * 299.99860 * 1 2 3 26 26 H 1.09006 * 109.47038 * 60.00027 * 1 2 3 27 27 H 1.09002 * 109.46740 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47018 * 180.02562 * 3 2 1 29 29 H 1.08996 * 109.47143 * 299.99963 * 3 2 1 30 30 H 1.08996 * 109.46571 * 59.99778 * 3 2 1 31 31 H 1.08994 * 109.47007 * 299.99666 * 4 2 1 32 32 H 1.08996 * 109.47256 * 59.99797 * 4 2 1 33 33 H 1.08999 * 109.47073 * 179.97438 * 4 2 1 34 34 H 1.08007 * 120.48922 * 0.02562 * 6 5 2 35 35 H 1.08003 * 119.80763 * 0.25566 * 9 8 7 36 36 H 1.08002 * 119.80876 * 179.97438 * 10 9 8 37 37 H 1.07996 * 120.00485 * 179.97438 * 11 10 9 38 38 H 0.96999 * 120.00064 * 180.02562 * 16 15 13 39 39 H 1.08002 * 120.18785 * 359.75219 * 21 8 7 40 40 H 1.07999 * 120.48806 * 180.29002 * 22 7 6 41 41 H 1.07990 * 119.56214 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7103 1.2304 6 6 1.9718 -2.0876 1.2939 7 6 2.4350 -2.7344 2.4427 8 6 2.3836 -4.2129 2.5581 9 6 1.8562 -4.9773 1.5140 10 6 1.7993 -6.3562 1.6157 11 6 2.2623 -6.9910 2.7469 12 6 2.7967 -6.2365 3.8081 13 6 3.2738 -6.8841 4.9713 14 1 3.3103 -6.3508 5.9097 15 6 3.6986 -8.2158 4.9064 16 7 3.9894 -8.7540 3.7500 17 14 3.8504 -9.2250 6.4709 18 1 2.5270 -9.3028 7.1402 19 1 4.3151 -10.5945 6.1334 20 1 4.8292 -8.5803 7.3829 21 6 2.8541 -4.8360 3.7050 22 6 2.9533 -1.9511 3.4778 23 6 2.9824 -0.5798 3.3294 24 7 2.5292 -0.0079 2.2302 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6765 1.9563 0.8900 31 1 1.6768 -1.7488 -1.2493 32 1 1.6767 -0.2074 -2.1392 33 1 3.1300 -0.7208 -1.2495 34 1 1.5682 -2.6570 0.4695 35 1 1.4906 -4.4890 0.6227 36 1 1.3894 -6.9380 0.8034 37 1 2.2145 -8.0674 2.8199 38 1 4.2834 -9.6773 3.7049 39 1 3.2620 -4.2482 4.5140 40 1 3.3258 -2.4126 4.3804 41 1 3.3806 0.0338 4.1239 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244020221.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:15 Heat of formation + Delta-G solvation = 17.792285 kcal Electronic energy + Delta-G solvation = -20927.009776 eV Core-core repulsion = 17962.848929 eV Total energy + Delta-G solvation = -2964.160848 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.48307 -39.38460 -37.47529 -35.80333 -33.96092 -32.06090 -31.21337 -30.22333 -28.12865 -28.07050 -27.29504 -24.85728 -24.47281 -22.38479 -22.12910 -20.27817 -18.94072 -17.84425 -17.22416 -16.87551 -16.65445 -15.98515 -15.48206 -15.45850 -15.21161 -14.89842 -14.58969 -14.38190 -14.34059 -13.71215 -13.57024 -13.39167 -13.01964 -12.95197 -12.88487 -12.81619 -12.52969 -12.48208 -12.19776 -11.94689 -11.85129 -11.71707 -11.62136 -11.26616 -11.20210 -10.84577 -10.33822 -9.86160 -9.46937 -8.96273 -8.67026 -6.39173 -0.10701 0.23459 0.94908 1.32282 1.38005 1.48732 1.56191 2.19244 2.65889 2.98026 3.27894 3.61498 3.72591 3.82731 4.09186 4.12860 4.20023 4.21931 4.24652 4.44863 4.50666 4.72974 4.78985 4.81387 4.84958 4.92908 4.96202 4.98825 5.05463 5.06666 5.10655 5.14882 5.21937 5.28297 5.31146 5.44188 5.49251 5.56059 5.63294 5.83618 5.93302 6.02072 6.10250 6.30823 6.62427 6.89162 6.95333 7.08041 8.30344 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.032594 B = 0.003658 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 858.858142 B = 7651.669598 C = 8250.237594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.020 4.020 3 C -0.119 4.119 4 C -0.140 4.140 5 C 0.133 3.867 6 C -0.171 4.171 7 C 0.005 3.995 8 C -0.048 4.048 9 C -0.216 4.216 10 C -0.109 4.109 11 C -0.179 4.179 12 C 0.078 3.922 13 C -0.502 4.502 14 H 0.076 0.924 15 C 0.037 3.963 16 N -0.825 5.825 17 Si 0.982 3.018 18 H -0.261 1.261 19 H -0.267 1.267 20 H -0.259 1.259 21 C -0.216 4.216 22 C -0.188 4.188 23 C 0.100 3.900 24 N -0.500 5.500 25 H 0.048 0.952 26 H 0.085 0.915 27 H 0.053 0.947 28 H 0.044 0.956 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.085 0.915 33 H 0.048 0.952 34 H 0.142 0.858 35 H 0.122 0.878 36 H 0.118 0.882 37 H 0.105 0.895 38 H 0.289 0.711 39 H 0.103 0.897 40 H 0.135 0.865 41 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.992 12.601 -6.008 14.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.021 4.021 3 C -0.177 4.177 4 C -0.198 4.198 5 C -0.004 4.004 6 C -0.190 4.190 7 C -0.002 4.002 8 C -0.049 4.049 9 C -0.235 4.235 10 C -0.128 4.128 11 C -0.199 4.199 12 C 0.075 3.925 13 C -0.531 4.531 14 H 0.095 0.905 15 C -0.178 4.178 16 N -0.451 5.451 17 Si 0.802 3.198 18 H -0.185 1.185 19 H -0.191 1.191 20 H -0.184 1.184 21 C -0.236 4.236 22 C -0.207 4.207 23 C -0.055 4.055 24 N -0.210 5.210 25 H 0.067 0.933 26 H 0.104 0.896 27 H 0.073 0.927 28 H 0.063 0.937 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.160 0.840 35 H 0.140 0.860 36 H 0.136 0.864 37 H 0.122 0.878 38 H 0.100 0.900 39 H 0.121 0.879 40 H 0.153 0.847 41 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -3.853 13.307 -6.187 15.172 hybrid contribution 0.362 -1.933 1.000 2.207 sum -3.491 11.374 -5.186 12.979 Atomic orbital electron populations 1.21854 0.92285 1.02241 1.02762 1.19597 0.96463 0.96003 0.89999 1.21609 1.00407 0.93597 1.02051 1.21946 1.00847 1.00549 0.96416 1.21472 0.93900 0.90056 0.94986 1.22102 1.02828 0.95525 0.98573 1.19518 0.94025 0.92653 0.94044 1.18559 1.00428 0.90634 0.95239 1.20784 1.09781 0.93427 0.99480 1.20941 0.99779 0.94628 0.97420 1.21441 1.03166 0.99570 0.95731 1.17890 0.89426 0.91680 0.93462 1.19800 1.39587 0.97571 0.96186 0.90539 1.26733 0.91576 0.98603 1.00889 1.69858 1.31675 1.15341 1.28206 0.85260 0.79777 0.77105 0.77641 1.18510 1.19144 1.18369 1.21264 1.09334 0.94485 0.98477 1.22393 1.02499 0.95613 1.00244 1.23006 0.95163 0.91928 0.95447 1.67491 1.11336 1.41011 1.01133 0.93283 0.89595 0.92745 0.93728 0.90834 0.92670 0.92319 0.89612 0.93323 0.84020 0.86029 0.86438 0.87755 0.90025 0.87884 0.84695 0.80082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.57 8.41 71.98 0.61 -1.96 16 2 C -0.02 -0.44 0.87 -52.93 -0.05 -0.48 16 3 C -0.12 -2.40 7.81 71.98 0.56 -1.84 16 4 C -0.14 -2.71 8.08 71.98 0.58 -2.13 16 5 C 0.13 3.90 5.56 42.49 0.24 4.14 16 6 C -0.17 -5.56 8.47 22.58 0.19 -5.37 16 7 C 0.01 0.20 5.91 -19.84 -0.12 0.08 16 8 C -0.05 -2.15 5.87 -20.09 -0.12 -2.27 16 9 C -0.22 -9.22 9.46 22.67 0.21 -9.01 16 10 C -0.11 -4.99 10.01 22.18 0.22 -4.77 16 11 C -0.18 -9.39 8.69 22.76 0.20 -9.19 16 12 C 0.08 4.19 5.57 -21.32 -0.12 4.07 16 13 C -0.50 -27.01 9.05 23.46 0.21 -26.79 16 14 H 0.08 3.95 7.91 -2.91 -0.02 3.93 16 15 C 0.04 1.86 5.14 85.25 0.44 2.29 16 16 N -0.82 -42.89 10.96 21.82 0.24 -42.65 16 17 Si 0.98 37.88 29.59 68.60 2.03 39.91 16 18 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 19 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 20 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 21 C -0.22 -10.63 9.19 22.96 0.21 -10.42 16 22 C -0.19 -6.40 9.50 22.58 0.21 -6.18 16 23 C 0.10 2.94 11.17 84.61 0.95 3.88 16 24 N -0.50 -15.14 9.01 -184.16 -1.66 -16.80 16 25 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 27 H 0.05 1.09 8.09 -2.39 -0.02 1.07 16 28 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 1.21 7.85 -2.39 -0.02 1.19 16 31 H 0.06 1.16 6.69 -2.39 -0.02 1.14 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.14 4.22 4.98 -2.91 -0.01 4.21 16 35 H 0.12 4.39 6.27 -2.91 -0.02 4.37 16 36 H 0.12 4.62 8.06 -2.91 -0.02 4.60 16 37 H 0.10 5.68 6.15 -2.91 -0.02 5.66 16 38 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 39 H 0.10 4.78 6.28 -2.91 -0.02 4.76 16 40 H 0.14 4.49 6.33 -2.91 -0.02 4.47 16 41 H 0.18 4.00 8.06 -2.92 -0.02 3.97 16 Total: -1.00 -60.08 333.44 6.07 -54.01 By element: Atomic # 1 Polarization: 30.46 SS G_CDS: 1.02 Total: 31.48 kcal Atomic # 6 Polarization: -70.38 SS G_CDS: 4.43 Total: -65.95 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -1.42 Total: -59.45 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.91 kcal Total: -60.08 6.07 -54.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244020221.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.805 kcal (2) G-P(sol) polarization free energy of solvation -60.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds