Wall clock time and date at job start Tue Mar 31 2020 05:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47033 * 2 1 4 4 C 1.53002 * 109.46965 * 239.99745 * 2 1 3 5 5 C 1.50702 * 109.47035 * 120.00104 * 2 1 3 6 6 C 1.37937 * 119.54814 * 75.00020 * 5 2 1 7 7 C 1.40023 * 118.98430 * 180.02562 * 6 5 2 8 8 C 1.47911 * 120.92754 * 179.72669 * 7 6 5 9 9 C 1.39125 * 120.33338 * 309.99756 * 8 7 6 10 10 C 1.38132 * 119.98578 * 180.02562 * 9 8 7 11 11 C 1.38889 * 120.66879 * 359.97438 * 10 9 8 12 12 C 1.36468 * 120.68051 * 0.02562 * 11 10 9 13 13 C 1.40746 * 119.98603 * 359.67637 * 12 11 10 14 14 C 1.40885 * 120.33208 * 180.32269 * 13 12 11 15 15 H 1.08000 * 120.00097 * 153.38740 * 14 13 12 16 16 C 1.40120 * 119.99923 * 333.39272 * 14 13 12 17 17 N 1.30739 * 120.00063 * 343.92264 * 16 14 13 18 18 Si 1.86803 * 119.99990 * 163.92528 * 16 14 13 19 19 H 1.48500 * 109.47381 * 89.99799 * 18 16 14 20 20 H 1.48504 * 109.46923 * 209.99831 * 18 16 14 21 21 H 1.48502 * 109.47061 * 329.99753 * 18 16 14 22 22 C 1.40046 * 118.13775 * 359.97438 * 7 6 5 23 23 C 1.37897 * 118.99231 * 0.02562 * 22 7 6 24 24 N 1.31936 * 119.54036 * 255.01767 * 5 2 1 25 25 H 1.09005 * 109.47372 * 300.00241 * 1 2 3 26 26 H 1.08993 * 109.47486 * 60.00121 * 1 2 3 27 27 H 1.09001 * 109.47214 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47291 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47347 * 299.99688 * 3 2 1 30 30 H 1.08996 * 109.47375 * 59.99922 * 3 2 1 31 31 H 1.08999 * 109.47266 * 300.00443 * 4 2 1 32 32 H 1.09004 * 109.46665 * 60.00236 * 4 2 1 33 33 H 1.08997 * 109.46875 * 179.97438 * 4 2 1 34 34 H 1.08003 * 120.50719 * 359.97438 * 6 5 2 35 35 H 1.08002 * 120.00598 * 0.02562 * 9 8 7 36 36 H 1.08000 * 119.66470 * 179.97438 * 10 9 8 37 37 H 1.08002 * 119.65924 * 180.02562 * 11 10 9 38 38 H 1.08001 * 120.00830 * 179.97438 * 12 11 10 39 39 H 0.97000 * 120.00403 * 179.97438 * 17 16 14 40 40 H 1.08000 * 120.50547 * 179.97438 * 22 7 6 41 41 H 1.08003 * 119.54785 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.9663 -2.0867 1.2960 7 6 2.4358 -2.7346 2.4450 8 6 2.3801 -4.2079 2.5634 9 6 1.1976 -4.8901 2.2953 10 6 1.1534 -6.2660 2.4086 11 6 2.2812 -6.9821 2.7887 12 6 3.4552 -6.3407 3.0582 13 6 3.5335 -4.9400 2.9455 14 6 4.7436 -4.2710 3.2154 15 1 4.9521 -3.3212 2.7454 16 6 5.6768 -4.8379 4.0936 17 7 5.3155 -5.8043 4.8966 18 14 7.4369 -4.2128 4.1171 19 1 7.5561 -3.1059 5.0999 20 1 8.3498 -5.3185 4.5037 21 1 7.8042 -3.7170 2.7663 22 6 2.9549 -1.9482 3.4812 23 6 2.9824 -0.5778 3.3306 24 7 2.5289 -0.0074 2.2304 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6766 -1.7489 -1.2492 32 1 1.6766 -0.2074 -2.1392 33 1 3.1300 -0.7209 -1.2494 34 1 1.5578 -2.6557 0.4739 35 1 0.3144 -4.3439 1.9985 36 1 0.2327 -6.7903 2.1996 37 1 2.2285 -8.0576 2.8718 38 1 4.3254 -6.9083 3.3533 39 1 5.9616 -6.1971 5.5043 40 1 3.3271 -2.4080 4.3847 41 1 3.3804 0.0373 4.1242 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244021013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:18 Heat of formation + Delta-G solvation = 28.058335 kcal Electronic energy + Delta-G solvation = -21570.279882 eV Core-core repulsion = 18606.564204 eV Total energy + Delta-G solvation = -2963.715678 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.87554 -37.68833 -36.12322 -33.83940 -32.54306 -30.06982 -29.46825 -28.74851 -27.12396 -27.01183 -25.47306 -23.02713 -22.80379 -20.88307 -20.41115 -18.60790 -17.41471 -16.12771 -15.54775 -15.33126 -14.84150 -14.55292 -14.21803 -13.99932 -13.67224 -13.42476 -13.33985 -12.78160 -12.65844 -12.12883 -12.07034 -11.90024 -11.75715 -11.57021 -11.45504 -11.22670 -11.16821 -10.90092 -10.76482 -10.73318 -10.56791 -10.44842 -9.84647 -9.68865 -9.32341 -8.85975 -8.72142 -8.26614 -7.52537 -7.40061 -6.91037 -4.49899 1.84438 1.87492 2.70319 2.97674 2.99562 3.03921 3.14317 3.82134 4.46177 4.51972 4.61589 4.96231 5.21699 5.32202 5.45881 5.58348 5.65071 5.73181 5.79031 5.87850 5.93801 6.00318 6.03449 6.07564 6.09652 6.11883 6.22989 6.28929 6.41034 6.46767 6.50848 6.56628 6.59637 6.86328 6.92546 7.06575 7.13813 7.29614 7.44371 7.45715 7.77317 7.90165 7.97103 8.12263 8.46472 8.67085 8.70857 8.80239 10.00859 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016079 B = 0.005959 C = 0.004788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.939053 B = 4697.295838 C = 5846.867711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.016 4.016 3 C -0.123 4.123 4 C -0.140 4.140 5 C 0.128 3.872 6 C -0.179 4.179 7 C 0.066 3.934 8 C -0.197 4.197 9 C -0.066 4.066 10 C -0.243 4.243 11 C -0.098 4.098 12 C -0.158 4.158 13 C 0.134 3.866 14 C -0.449 4.449 15 H 0.082 0.918 16 C 0.078 3.922 17 N -0.785 5.785 18 Si 0.904 3.096 19 H -0.267 1.267 20 H -0.274 1.274 21 H -0.260 1.260 22 C -0.156 4.156 23 C 0.084 3.916 24 N -0.503 5.503 25 H 0.055 0.945 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.045 0.955 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.123 0.877 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.119 0.881 39 H 0.283 0.717 40 H 0.137 0.863 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.667 6.879 -5.484 9.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.017 4.017 3 C -0.180 4.180 4 C -0.198 4.198 5 C -0.010 4.010 6 C -0.199 4.199 7 C 0.058 3.942 8 C -0.198 4.198 9 C -0.085 4.085 10 C -0.263 4.263 11 C -0.117 4.117 12 C -0.177 4.177 13 C 0.131 3.869 14 C -0.478 4.478 15 H 0.100 0.900 16 C -0.142 4.142 17 N -0.409 5.409 18 Si 0.728 3.272 19 H -0.192 1.192 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.175 4.175 23 C -0.071 4.071 24 N -0.212 5.212 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.141 0.859 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.107 0.893 38 H 0.137 0.863 39 H 0.095 0.905 40 H 0.155 0.845 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.527 7.640 -5.334 9.963 hybrid contribution 0.840 -0.923 0.364 1.300 sum -2.687 6.717 -4.970 8.777 Atomic orbital electron populations 1.21846 0.93816 1.01991 1.01616 1.19390 0.95316 0.95590 0.91378 1.21630 1.01087 0.94308 1.00993 1.21926 1.01398 1.00412 0.96027 1.20746 0.95931 0.90358 0.94001 1.21993 1.04467 0.94651 0.98838 1.19153 0.90241 0.93587 0.91237 1.18509 0.94637 0.89361 1.17331 1.20546 0.95556 0.93871 0.98487 1.20281 0.97978 0.93785 1.14210 1.20503 0.94004 0.97621 0.99576 1.21056 0.97352 0.94501 1.04775 1.17499 0.90935 0.91474 0.86996 1.19581 1.00034 1.05884 1.22293 0.90033 1.25952 1.00735 0.93811 0.93663 1.69768 1.36274 1.20144 1.14742 0.86351 0.81347 0.79410 0.80054 1.19183 1.19928 1.18333 1.22368 1.00602 0.93992 1.00586 1.22451 0.97090 0.92693 0.94892 1.67298 1.11971 1.40978 1.01003 0.92604 0.92396 0.92480 0.92778 0.93576 0.91846 0.92128 0.92418 0.92482 0.85900 0.89224 0.89293 0.89349 0.86348 0.90549 0.84539 0.83875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 8.40 37.16 0.31 -1.35 16 2 C -0.02 -0.22 0.87 -155.66 -0.14 -0.36 16 3 C -0.12 -1.60 7.80 37.15 0.29 -1.31 16 4 C -0.14 -1.78 8.08 37.16 0.30 -1.48 16 5 C 0.13 2.23 5.56 -82.66 -0.46 1.77 16 6 C -0.18 -3.40 8.62 -39.02 -0.34 -3.74 16 7 C 0.07 1.40 4.92 -104.59 -0.51 0.89 16 8 C -0.20 -4.60 5.57 -104.23 -0.58 -5.18 16 9 C -0.07 -1.45 9.55 -39.29 -0.38 -1.83 16 10 C -0.24 -5.27 10.03 -39.38 -0.40 -5.67 16 11 C -0.10 -2.23 9.96 -39.98 -0.40 -2.62 16 12 C -0.16 -3.91 8.62 -39.27 -0.34 -4.25 16 13 C 0.13 3.38 5.56 -106.57 -0.59 2.79 16 14 C -0.45 -11.20 7.21 -37.87 -0.27 -11.47 16 15 H 0.08 2.04 6.68 -52.49 -0.35 1.69 16 16 C 0.08 1.84 5.16 -17.31 -0.09 1.75 16 17 N -0.78 -19.14 10.99 55.56 0.61 -18.53 16 18 Si 0.90 18.03 29.59 -169.99 -5.03 13.00 16 19 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 21 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 22 C -0.16 -3.18 8.16 -39.03 -0.32 -3.49 16 23 C 0.08 1.53 11.17 -17.62 -0.20 1.34 16 24 N -0.50 -9.21 9.00 -9.58 -0.09 -9.29 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.87 7.85 -51.93 -0.41 0.46 16 31 H 0.06 0.78 6.70 -51.93 -0.35 0.43 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.12 2.18 6.72 -52.48 -0.35 1.83 16 35 H 0.09 1.77 8.06 -52.49 -0.42 1.34 16 36 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 37 H 0.09 1.78 8.06 -52.49 -0.42 1.35 16 38 H 0.12 3.01 6.25 -52.49 -0.33 2.69 16 39 H 0.28 6.30 8.29 -40.82 -0.34 5.96 16 40 H 0.14 2.90 7.42 -52.49 -0.39 2.51 16 41 H 0.14 2.20 8.06 -52.48 -0.42 1.78 16 LS Contribution 335.22 15.07 5.05 5.05 Total: -1.00 -26.10 335.22 -9.51 -35.61 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -5.96 Total: 8.38 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: -4.10 Total: -34.23 kcal Atomic # 7 Polarization: -28.34 SS G_CDS: 0.52 Total: -27.82 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -26.10 -9.51 -35.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244021013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.673 kcal (2) G-P(sol) polarization free energy of solvation -26.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds