Wall clock time and date at job start Tue Mar 31 2020 05:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47033 * 2 1 4 4 C 1.53002 * 109.46965 * 239.99745 * 2 1 3 5 5 C 1.50702 * 109.47035 * 120.00104 * 2 1 3 6 6 C 1.37937 * 119.54814 * 75.00020 * 5 2 1 7 7 C 1.40023 * 118.98430 * 180.02562 * 6 5 2 8 8 C 1.47911 * 120.92754 * 179.72669 * 7 6 5 9 9 C 1.39125 * 120.33338 * 309.99756 * 8 7 6 10 10 C 1.38132 * 119.98578 * 180.02562 * 9 8 7 11 11 C 1.38889 * 120.66879 * 359.97438 * 10 9 8 12 12 C 1.36468 * 120.68051 * 0.02562 * 11 10 9 13 13 C 1.40746 * 119.98603 * 359.67637 * 12 11 10 14 14 C 1.40885 * 120.33208 * 180.32269 * 13 12 11 15 15 H 1.08000 * 120.00097 * 153.38740 * 14 13 12 16 16 C 1.40120 * 119.99923 * 333.39272 * 14 13 12 17 17 N 1.30739 * 120.00063 * 343.92264 * 16 14 13 18 18 Si 1.86803 * 119.99990 * 163.92528 * 16 14 13 19 19 H 1.48500 * 109.47381 * 89.99799 * 18 16 14 20 20 H 1.48504 * 109.46923 * 209.99831 * 18 16 14 21 21 H 1.48502 * 109.47061 * 329.99753 * 18 16 14 22 22 C 1.40046 * 118.13775 * 359.97438 * 7 6 5 23 23 C 1.37897 * 118.99231 * 0.02562 * 22 7 6 24 24 N 1.31936 * 119.54036 * 255.01767 * 5 2 1 25 25 H 1.09005 * 109.47372 * 300.00241 * 1 2 3 26 26 H 1.08993 * 109.47486 * 60.00121 * 1 2 3 27 27 H 1.09001 * 109.47214 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47291 * 180.02562 * 3 2 1 29 29 H 1.09004 * 109.47347 * 299.99688 * 3 2 1 30 30 H 1.08996 * 109.47375 * 59.99922 * 3 2 1 31 31 H 1.08999 * 109.47266 * 300.00443 * 4 2 1 32 32 H 1.09004 * 109.46665 * 60.00236 * 4 2 1 33 33 H 1.08997 * 109.46875 * 179.97438 * 4 2 1 34 34 H 1.08003 * 120.50719 * 359.97438 * 6 5 2 35 35 H 1.08002 * 120.00598 * 0.02562 * 9 8 7 36 36 H 1.08000 * 119.66470 * 179.97438 * 10 9 8 37 37 H 1.08002 * 119.65924 * 180.02562 * 11 10 9 38 38 H 1.08001 * 120.00830 * 179.97438 * 12 11 10 39 39 H 0.97000 * 120.00403 * 179.97438 * 17 16 14 40 40 H 1.08000 * 120.50547 * 179.97438 * 22 7 6 41 41 H 1.08003 * 119.54785 * 179.97438 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.9663 -2.0867 1.2960 7 6 2.4358 -2.7346 2.4450 8 6 2.3801 -4.2079 2.5634 9 6 1.1976 -4.8901 2.2953 10 6 1.1534 -6.2660 2.4086 11 6 2.2812 -6.9821 2.7887 12 6 3.4552 -6.3407 3.0582 13 6 3.5335 -4.9400 2.9455 14 6 4.7436 -4.2710 3.2154 15 1 4.9521 -3.3212 2.7454 16 6 5.6768 -4.8379 4.0936 17 7 5.3155 -5.8043 4.8966 18 14 7.4369 -4.2128 4.1171 19 1 7.5561 -3.1059 5.0999 20 1 8.3498 -5.3185 4.5037 21 1 7.8042 -3.7170 2.7663 22 6 2.9549 -1.9482 3.4812 23 6 2.9824 -0.5778 3.3306 24 7 2.5289 -0.0074 2.2304 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6766 -1.7489 -1.2492 32 1 1.6766 -0.2074 -2.1392 33 1 3.1300 -0.7209 -1.2494 34 1 1.5578 -2.6557 0.4739 35 1 0.3144 -4.3439 1.9985 36 1 0.2327 -6.7903 2.1996 37 1 2.2285 -8.0576 2.8718 38 1 4.3254 -6.9083 3.3533 39 1 5.9616 -6.1971 5.5043 40 1 3.3271 -2.4080 4.3847 41 1 3.3804 0.0373 4.1242 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244021013.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:17 Heat of formation + Delta-G solvation = 18.086805 kcal Electronic energy + Delta-G solvation = -21570.712280 eV Core-core repulsion = 18606.564204 eV Total energy + Delta-G solvation = -2964.148076 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.32726 -39.38661 -37.35806 -35.63168 -34.14318 -31.72884 -31.03508 -30.41527 -28.13281 -28.07298 -27.25793 -24.53147 -24.31674 -22.65737 -21.96774 -19.98221 -19.20207 -17.65488 -17.09518 -16.93965 -16.33522 -16.09512 -15.53375 -15.47495 -15.18174 -14.90507 -14.55718 -14.42163 -14.08466 -13.74032 -13.54157 -13.22671 -12.96556 -12.92071 -12.85446 -12.71849 -12.62281 -12.49967 -12.19791 -11.89588 -11.83164 -11.66799 -11.56603 -11.43499 -11.10307 -10.47769 -10.21620 -9.72904 -9.34322 -9.16836 -8.68416 -6.35932 0.24758 0.37668 0.98162 1.21870 1.34671 1.44504 1.50019 2.15559 2.70107 3.00451 3.36325 3.66404 3.79598 4.07611 4.15108 4.19394 4.32622 4.38126 4.42746 4.45714 4.57510 4.78153 4.82312 4.84178 4.87261 4.90333 4.95026 5.05340 5.07888 5.09316 5.19850 5.25913 5.29194 5.32880 5.40117 5.46890 5.56805 5.63926 5.67812 5.91991 6.02949 6.08479 6.16004 6.32225 6.63364 6.87575 6.97784 7.19730 8.25918 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016079 B = 0.005959 C = 0.004788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1740.939053 B = 4697.295838 C = 5846.867711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.019 4.019 3 C -0.118 4.118 4 C -0.138 4.138 5 C 0.130 3.870 6 C -0.181 4.181 7 C 0.042 3.958 8 C -0.204 4.204 9 C -0.074 4.074 10 C -0.240 4.240 11 C -0.103 4.103 12 C -0.184 4.184 13 C 0.104 3.896 14 C -0.472 4.472 15 H 0.070 0.930 16 C 0.043 3.957 17 N -0.815 5.815 18 Si 0.968 3.032 19 H -0.260 1.260 20 H -0.263 1.263 21 H -0.265 1.265 22 C -0.171 4.171 23 C 0.088 3.912 24 N -0.505 5.505 25 H 0.048 0.952 26 H 0.085 0.915 27 H 0.054 0.946 28 H 0.040 0.960 29 H 0.074 0.926 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.043 0.957 34 H 0.134 0.866 35 H 0.113 0.887 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.290 0.710 40 H 0.118 0.882 41 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.615 8.233 -6.870 11.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.019 4.019 3 C -0.176 4.176 4 C -0.196 4.196 5 C -0.008 4.008 6 C -0.201 4.201 7 C 0.034 3.966 8 C -0.206 4.206 9 C -0.092 4.092 10 C -0.259 4.259 11 C -0.122 4.122 12 C -0.204 4.204 13 C 0.101 3.899 14 C -0.501 4.501 15 H 0.088 0.912 16 C -0.174 4.174 17 N -0.440 5.440 18 Si 0.789 3.211 19 H -0.185 1.185 20 H -0.188 1.188 21 H -0.189 1.189 22 C -0.191 4.191 23 C -0.067 4.067 24 N -0.215 5.215 25 H 0.067 0.933 26 H 0.104 0.896 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.063 0.937 34 H 0.151 0.849 35 H 0.131 0.869 36 H 0.138 0.862 37 H 0.129 0.871 38 H 0.121 0.879 39 H 0.101 0.899 40 H 0.136 0.864 41 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -4.488 8.987 -6.719 12.086 hybrid contribution 1.002 -1.307 0.743 1.807 sum -3.486 7.680 -5.977 10.337 Atomic orbital electron populations 1.21830 0.92174 1.02199 1.02684 1.19571 0.96551 0.95841 0.89981 1.21596 1.00240 0.93750 1.01980 1.21924 1.00618 1.00488 0.96527 1.21399 0.94339 0.90134 0.94910 1.22104 1.04301 0.95433 0.98276 1.19243 0.91787 0.92885 0.92645 1.18848 0.94643 0.90720 1.16384 1.20873 0.95864 0.94375 0.98115 1.20666 0.98728 0.93891 1.12651 1.20794 0.93583 0.98980 0.98805 1.21049 0.97937 0.94618 1.06764 1.17837 0.91949 0.92055 0.88040 1.19597 1.01096 1.05935 1.23481 0.91153 1.26629 1.03981 0.93877 0.92864 1.69807 1.37615 1.21231 1.15384 0.85404 0.76843 0.79190 0.79651 1.18479 1.18762 1.18908 1.22277 1.01728 0.95001 1.00131 1.22834 0.96160 0.92064 0.95600 1.67455 1.12009 1.40897 1.01131 0.93321 0.89577 0.92730 0.94060 0.90743 0.92721 0.92485 0.89517 0.93740 0.84863 0.86887 0.86151 0.87053 0.87934 0.89896 0.86422 0.81151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 8.40 71.98 0.60 -2.23 16 2 C -0.02 -0.47 0.87 -52.93 -0.05 -0.52 16 3 C -0.12 -2.78 7.80 71.98 0.56 -2.22 16 4 C -0.14 -3.15 8.08 71.98 0.58 -2.57 16 5 C 0.13 4.39 5.56 42.47 0.24 4.63 16 6 C -0.18 -6.77 8.62 22.63 0.20 -6.57 16 7 C 0.04 1.83 4.92 -19.84 -0.10 1.73 16 8 C -0.20 -9.75 5.57 -19.61 -0.11 -9.86 16 9 C -0.07 -3.20 9.55 22.46 0.21 -2.99 16 10 C -0.24 -10.10 10.03 22.40 0.22 -9.87 16 11 C -0.10 -4.66 9.96 22.01 0.22 -4.44 16 12 C -0.18 -9.46 8.62 22.47 0.19 -9.26 16 13 C 0.10 5.44 5.56 -21.12 -0.12 5.33 16 14 C -0.47 -24.59 7.21 23.38 0.17 -24.42 16 15 H 0.07 3.69 6.68 -2.91 -0.02 3.67 16 16 C 0.04 2.10 5.16 85.31 0.44 2.54 16 17 N -0.82 -41.14 10.99 21.86 0.24 -40.90 16 18 Si 0.97 37.78 29.59 68.60 2.03 39.81 16 19 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 20 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 21 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 22 C -0.17 -7.17 8.16 22.63 0.18 -6.99 16 23 C 0.09 3.20 11.17 84.59 0.94 4.15 16 24 N -0.51 -17.96 9.00 -184.21 -1.66 -19.62 16 25 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 26 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.05 1.20 8.08 -2.39 -0.02 1.18 16 28 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 29 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 30 H 0.05 1.37 7.85 -2.39 -0.02 1.36 16 31 H 0.06 1.34 6.70 -2.39 -0.02 1.32 16 32 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 33 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.13 4.60 6.72 -2.91 -0.02 4.58 16 35 H 0.11 4.27 8.06 -2.91 -0.02 4.24 16 36 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 37 H 0.11 4.38 8.06 -2.91 -0.02 4.36 16 38 H 0.10 5.48 6.25 -2.91 -0.02 5.46 16 39 H 0.29 13.25 8.29 -92.71 -0.77 12.48 16 40 H 0.12 5.29 7.42 -2.91 -0.02 5.27 16 41 H 0.17 5.07 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -57.55 335.22 6.02 -51.53 By element: Atomic # 1 Polarization: 31.74 SS G_CDS: 1.01 Total: 32.75 kcal Atomic # 6 Polarization: -67.96 SS G_CDS: 4.40 Total: -63.56 kcal Atomic # 7 Polarization: -59.10 SS G_CDS: -1.42 Total: -60.52 kcal Atomic # 14 Polarization: 37.78 SS G_CDS: 2.03 Total: 39.81 kcal Total: -57.55 6.02 -51.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244021013.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.614 kcal (2) G-P(sol) polarization free energy of solvation -57.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds