Wall clock time and date at job start Tue Mar 31 2020 05:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47265 * 2 1 4 4 C 1.53006 * 109.46815 * 239.99914 * 2 1 3 5 5 C 1.50702 * 109.46865 * 120.00177 * 2 1 3 6 6 C 1.37964 * 119.55015 * 75.00079 * 5 2 1 7 7 C 1.39969 * 118.98983 * 179.97438 * 6 5 2 8 8 C 1.48020 * 120.92451 * 179.97438 * 7 6 5 9 9 C 1.39913 * 119.88287 * 0.23164 * 8 7 6 10 10 C 1.36271 * 120.12522 * 180.27673 * 9 8 7 11 11 C 1.40921 * 119.87493 * 359.47240 * 10 9 8 12 12 C 1.41050 * 120.11813 * 180.25463 * 11 10 9 13 13 H 1.08001 * 120.00036 * 24.66445 * 12 11 10 14 14 C 1.40056 * 119.99721 * 204.66316 * 12 11 10 15 15 N 1.30761 * 120.00584 * 17.93791 * 14 12 11 16 16 Si 1.86803 * 119.99621 * 197.94063 * 14 12 11 17 17 H 1.48497 * 109.47270 * 90.00077 * 16 14 12 18 18 H 1.48504 * 109.46824 * 210.00046 * 16 14 12 19 19 H 1.48500 * 109.47396 * 329.99654 * 16 14 12 20 20 C 1.40921 * 119.76043 * 0.27577 * 11 10 9 21 21 C 1.36272 * 119.87709 * 0.02562 * 20 11 10 22 22 C 1.40001 * 118.14742 * 0.27297 * 7 6 5 23 23 C 1.37929 * 118.99594 * 359.48055 * 22 7 6 24 24 N 1.31929 * 119.54466 * 255.01971 * 5 2 1 25 25 H 1.09001 * 109.47435 * 299.99703 * 1 2 3 26 26 H 1.09006 * 109.47391 * 60.00223 * 1 2 3 27 27 H 1.08998 * 109.47255 * 180.02562 * 1 2 3 28 28 H 1.08991 * 109.47435 * 180.02562 * 3 2 1 29 29 H 1.09006 * 109.46734 * 300.00180 * 3 2 1 30 30 H 1.09001 * 109.47012 * 59.99411 * 3 2 1 31 31 H 1.08998 * 109.47253 * 300.00055 * 4 2 1 32 32 H 1.08993 * 109.47041 * 59.99931 * 4 2 1 33 33 H 1.09005 * 109.46455 * 180.02562 * 4 2 1 34 34 H 1.07994 * 120.50444 * 0.02562 * 6 5 2 35 35 H 1.08006 * 119.93662 * 0.05305 * 9 8 7 36 36 H 1.08003 * 120.06241 * 179.74892 * 10 9 8 37 37 H 0.96998 * 120.00295 * 180.02562 * 15 14 12 38 38 H 1.08003 * 120.05711 * 180.02562 * 20 11 10 39 39 H 1.07992 * 119.94318 * 179.97438 * 21 20 11 40 40 H 1.07997 * 120.50759 * 179.72188 * 22 7 6 41 41 H 1.07997 * 119.54918 * 180.24475 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0323 -0.7105 1.2305 6 6 1.9662 -2.0870 1.2960 7 6 2.4365 -2.7348 2.4442 8 6 2.3857 -4.2096 2.5602 9 6 1.8661 -4.9739 1.5098 10 6 1.8117 -6.3316 1.6137 11 6 2.2903 -6.9663 2.7773 12 6 2.2415 -8.3716 2.8881 13 1 2.2272 -8.9832 1.9981 14 6 2.2115 -8.9737 4.1522 15 7 1.8788 -8.2710 5.2036 16 14 2.6471 -10.7809 4.3364 17 1 4.1055 -10.9162 4.5807 18 1 1.8977 -11.3563 5.4822 19 1 2.2840 -11.5069 3.0929 20 6 2.8175 -6.1918 3.8300 21 6 2.8615 -4.8344 3.7181 22 6 2.9505 -1.9486 3.4823 23 6 2.9832 -0.5782 3.3300 24 7 2.5288 -0.0075 2.2304 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 1.6766 -1.7489 -1.2493 32 1 1.6766 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 1.5586 -2.6560 0.4736 35 1 1.5040 -4.4868 0.6165 36 1 1.4067 -6.9204 0.8040 37 1 1.8584 -8.6880 6.0791 38 1 3.1861 -6.6733 4.7238 39 1 3.2649 -4.2399 4.5244 40 1 3.3195 -2.4084 4.3872 41 1 3.3815 0.0366 4.1236 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244021561.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:20 Heat of formation + Delta-G solvation = 26.707479 kcal Electronic energy + Delta-G solvation = -20877.163681 eV Core-core repulsion = 17913.389425 eV Total energy + Delta-G solvation = -2963.774256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.00736 -37.76320 -36.28472 -34.21764 -32.26341 -30.35785 -29.40811 -29.17460 -27.23337 -27.16660 -25.52479 -23.32806 -22.72495 -20.69827 -20.58118 -18.75174 -17.62859 -16.45398 -15.74026 -15.32962 -15.15643 -14.37060 -14.29157 -13.95328 -13.79957 -13.39071 -13.19120 -13.06918 -12.70918 -12.34627 -12.16319 -12.02395 -11.85109 -11.62661 -11.53379 -11.40058 -11.25277 -10.94947 -10.85533 -10.83866 -10.70499 -10.57924 -9.90386 -9.62773 -9.48564 -9.07068 -8.87318 -8.47367 -7.74040 -7.29685 -7.03047 -4.56224 1.54077 1.67747 2.72954 2.93106 2.96430 2.98669 3.16268 3.72560 4.22737 4.49530 4.58473 4.86403 5.13325 5.19876 5.37690 5.49053 5.54052 5.63016 5.66846 5.70165 5.77064 5.86821 5.93768 5.97395 6.00126 6.02382 6.13522 6.16670 6.33988 6.38766 6.39829 6.48430 6.66205 6.70384 6.79138 6.85936 7.06213 7.21880 7.28948 7.40864 7.71785 7.82871 7.95813 8.03997 8.38317 8.54432 8.60513 8.72955 9.87238 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034703 B = 0.003504 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.659496 B = 7989.976096 C = 8534.813183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.018 4.018 3 C -0.123 4.123 4 C -0.140 4.140 5 C 0.140 3.860 6 C -0.196 4.196 7 C 0.065 3.935 8 C -0.217 4.217 9 C -0.054 4.054 10 C -0.232 4.232 11 C 0.122 3.878 12 C -0.442 4.442 13 H 0.084 0.916 14 C 0.073 3.927 15 N -0.773 5.773 16 Si 0.914 3.086 17 H -0.264 1.264 18 H -0.275 1.275 19 H -0.259 1.259 20 C -0.174 4.174 21 C -0.068 4.068 22 C -0.206 4.206 23 C 0.101 3.899 24 N -0.514 5.514 25 H 0.055 0.945 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.126 0.874 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.286 0.714 38 H 0.120 0.880 39 H 0.093 0.907 40 H 0.127 0.873 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.069 9.227 -5.142 10.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.018 4.018 3 C -0.180 4.180 4 C -0.198 4.198 5 C 0.003 3.997 6 C -0.216 4.216 7 C 0.058 3.942 8 C -0.218 4.218 9 C -0.073 4.073 10 C -0.251 4.251 11 C 0.119 3.881 12 C -0.470 4.470 13 H 0.102 0.898 14 C -0.148 4.148 15 N -0.396 5.396 16 Si 0.737 3.263 17 H -0.189 1.189 18 H -0.200 1.200 19 H -0.183 1.183 20 C -0.193 4.193 21 C -0.087 4.087 22 C -0.226 4.226 23 C -0.055 4.055 24 N -0.224 5.224 25 H 0.074 0.926 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.144 0.856 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.098 0.902 38 H 0.137 0.863 39 H 0.111 0.889 40 H 0.145 0.855 41 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.047 10.119 -4.936 11.259 hybrid contribution 0.118 -1.844 0.461 1.905 sum 0.165 8.275 -4.474 9.408 Atomic orbital electron populations 1.21853 0.93630 1.02153 1.01722 1.19422 0.95483 0.95633 0.91304 1.21630 1.01007 0.94267 1.01102 1.21928 1.01290 1.00457 0.96086 1.20796 0.94717 0.90350 0.93800 1.21854 1.05503 0.94658 0.99552 1.19325 0.89660 0.93702 0.91517 1.17970 1.16669 0.89068 0.98103 1.20388 0.96979 0.93956 0.95971 1.20698 1.10194 0.93552 1.00676 1.17767 0.86355 0.93313 0.90696 1.19803 1.41845 0.92159 0.93157 0.89770 1.26078 0.92038 1.01339 0.95335 1.69794 1.30339 1.38833 1.00622 0.86206 0.79736 0.81122 0.79194 1.18930 1.20003 1.18298 1.21004 1.04923 0.92322 1.01087 1.20521 0.98006 0.94935 0.95192 1.22114 1.05188 0.94702 1.00565 1.22396 0.95948 0.92381 0.94737 1.67329 1.13169 1.40784 1.01165 0.92559 0.92279 0.92366 0.92814 0.93475 0.91824 0.92122 0.92270 0.92532 0.85591 0.88948 0.88573 0.90236 0.86268 0.88902 0.85523 0.83893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 8.40 37.16 0.31 -1.31 16 2 C -0.02 -0.23 0.87 -155.66 -0.14 -0.37 16 3 C -0.12 -1.49 7.80 37.16 0.29 -1.20 16 4 C -0.14 -1.65 8.08 37.16 0.30 -1.35 16 5 C 0.14 2.30 5.56 -82.65 -0.46 1.84 16 6 C -0.20 -3.48 8.46 -39.03 -0.33 -3.81 16 7 C 0.07 1.28 5.91 -104.58 -0.62 0.66 16 8 C -0.22 -4.76 5.90 -104.63 -0.62 -5.38 16 9 C -0.05 -1.19 9.38 -39.66 -0.37 -1.56 16 10 C -0.23 -5.42 9.73 -39.27 -0.38 -5.81 16 11 C 0.12 3.08 5.57 -106.80 -0.60 2.48 16 12 C -0.44 -10.95 9.03 -37.83 -0.34 -11.29 16 13 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 14 C 0.07 1.71 5.13 -17.33 -0.09 1.62 16 15 N -0.77 -18.65 10.96 55.55 0.61 -18.04 16 16 Si 0.91 17.29 29.60 -169.99 -5.03 12.26 16 17 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 18 H -0.28 -5.10 7.11 56.52 0.40 -4.69 16 19 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 20 C -0.17 -4.31 8.63 -39.27 -0.34 -4.65 16 21 C -0.07 -1.54 9.38 -39.66 -0.37 -1.91 16 22 C -0.21 -3.67 9.50 -39.03 -0.37 -4.04 16 23 C 0.10 1.64 11.17 -17.61 -0.20 1.45 16 24 N -0.51 -8.74 9.00 -9.57 -0.09 -8.82 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.82 7.85 -51.93 -0.41 0.42 16 31 H 0.06 0.72 6.70 -51.93 -0.35 0.37 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.13 2.10 4.98 -52.49 -0.26 1.84 16 35 H 0.09 1.77 6.27 -52.48 -0.33 1.44 16 36 H 0.10 2.09 8.06 -52.48 -0.42 1.67 16 37 H 0.29 6.23 8.29 -40.82 -0.34 5.89 16 38 H 0.12 3.01 6.16 -52.48 -0.32 2.69 16 39 H 0.09 1.90 6.27 -52.49 -0.33 1.57 16 40 H 0.13 2.11 6.32 -52.49 -0.33 1.78 16 41 H 0.14 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 333.20 15.07 5.02 5.02 Total: -1.00 -26.27 333.20 -9.49 -35.75 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -5.68 Total: 8.45 kcal Atomic # 6 Polarization: -30.30 SS G_CDS: -4.32 Total: -34.62 kcal Atomic # 7 Polarization: -27.39 SS G_CDS: 0.52 Total: -26.86 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.26 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -26.27 -9.49 -35.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244021561.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.462 kcal (2) G-P(sol) polarization free energy of solvation -26.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds