Wall clock time and date at job start Tue Mar 31 2020 05:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47031 * 2 1 4 4 C 1.50700 * 109.47410 * 120.00041 * 2 1 3 5 5 C 1.38412 * 119.85998 * 300.02652 * 4 2 1 6 6 C 1.38124 * 120.32391 * 179.97438 * 5 4 2 7 7 C 1.38785 * 120.04307 * 359.71697 * 6 5 4 8 8 N 1.39460 * 120.14026 * 180.30078 * 7 6 5 9 9 C 1.39966 * 119.72214 * 0.55464 * 7 6 5 10 10 C 1.48316 * 120.16561 * 179.72252 * 9 7 6 11 11 C 1.39776 * 120.00611 * 129.95365 * 10 9 7 12 12 C 1.38379 * 120.37256 * 180.28106 * 11 10 9 13 13 C 1.37730 * 120.38055 * 359.76986 * 12 11 10 14 14 C 1.40753 * 120.00021 * 359.97438 * 13 12 11 15 15 C 1.41429 * 120.18408 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00068 * 150.17979 * 15 14 13 17 17 C 1.39929 * 120.00118 * 330.17684 * 15 14 13 18 18 N 1.30823 * 119.99975 * 161.72956 * 17 15 14 19 19 Si 1.86799 * 119.99958 * 341.73094 * 17 15 14 20 20 H 1.48496 * 109.47306 * 95.41098 * 19 17 15 21 21 H 1.48496 * 109.47289 * 215.41419 * 19 17 15 22 22 H 1.48505 * 109.47057 * 335.41451 * 19 17 15 23 23 C 1.38772 * 120.00137 * 309.72603 * 10 9 7 24 24 C 1.38008 * 119.86043 * 119.99466 * 4 2 1 25 25 H 1.08997 * 109.46882 * 299.99647 * 1 2 3 26 26 H 1.08999 * 109.46874 * 59.99926 * 1 2 3 27 27 H 1.08999 * 109.47115 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46882 * 240.00353 * 2 1 3 29 29 H 1.09000 * 109.47127 * 180.02562 * 3 2 1 30 30 H 1.09006 * 109.46876 * 300.00255 * 3 2 1 31 31 H 1.09003 * 109.47037 * 59.99963 * 3 2 1 32 32 H 1.08005 * 119.83895 * 359.97438 * 5 4 2 33 33 H 1.08006 * 119.97729 * 179.97438 * 6 5 4 34 34 H 0.97003 * 119.99766 * 180.25690 * 8 7 6 35 35 H 0.97002 * 120.00086 * 0.25073 * 8 7 6 36 36 H 1.07996 * 119.81176 * 0.02562 * 11 10 9 37 37 H 1.07994 * 119.80667 * 179.74770 * 12 11 10 38 38 H 1.07998 * 119.99804 * 179.97438 * 13 12 11 39 39 H 0.96997 * 120.00437 * 179.97438 * 18 17 15 40 40 H 1.08003 * 120.18701 * 359.97438 * 23 10 9 41 41 H 1.07996 * 120.02537 * 0.05497 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0325 -0.7104 1.2304 5 6 1.6959 -0.2354 2.4862 6 6 2.1506 -0.8793 3.6203 7 6 2.9443 -2.0120 3.5052 8 7 3.3994 -2.6674 4.6490 9 6 3.2906 -2.4906 2.2363 10 6 4.1433 -3.6967 2.1019 11 6 3.7501 -4.7405 1.2596 12 6 4.5370 -5.8717 1.1329 13 6 5.7190 -5.9798 1.8317 14 6 6.1329 -4.9358 2.6802 15 6 7.3462 -5.0425 3.3991 16 1 7.9079 -4.1535 3.6453 17 6 7.8187 -6.2997 3.7914 18 7 9.0742 -6.4513 4.1265 19 14 6.6569 -7.7618 3.8368 20 1 6.7660 -8.5204 2.5649 21 1 7.0185 -8.6463 4.9734 22 1 5.2624 -7.2807 4.0081 23 6 5.3342 -3.7868 2.8087 24 6 2.8256 -1.8323 1.1004 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 1.0746 0.6432 2.5796 33 1 1.8849 -0.5035 4.5974 34 1 3.9571 -3.4567 4.5661 35 1 3.1583 -2.3339 5.5274 36 1 2.8248 -4.6655 0.7078 37 1 4.2223 -6.6744 0.4827 38 1 6.3282 -6.8655 1.7285 39 1 9.4018 -7.3227 4.3988 40 1 5.6431 -2.9803 3.4573 41 1 3.0860 -2.1992 0.1186 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244214071.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:06 Heat of formation + Delta-G solvation = 17.479125 kcal Electronic energy + Delta-G solvation = -21095.601324 eV Core-core repulsion = 18131.426897 eV Total energy + Delta-G solvation = -2964.174427 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.57461 -37.64841 -35.91932 -33.70334 -32.93237 -31.69206 -30.26132 -28.79858 -27.32008 -27.09881 -25.13186 -23.06983 -22.23495 -21.24192 -20.42056 -19.26309 -17.28031 -16.63818 -16.44372 -15.88450 -15.14827 -14.71844 -14.38088 -13.88976 -13.88928 -13.46504 -13.37156 -13.19063 -12.79911 -12.54508 -12.48107 -12.38698 -12.17268 -11.94792 -11.52516 -11.28511 -11.18126 -10.96005 -10.71948 -10.65930 -10.42497 -10.21486 -9.99001 -9.84531 -9.61207 -9.19689 -8.57324 -7.72990 -7.58882 -6.97189 -6.83471 -4.52568 1.65009 1.97602 2.58032 2.67754 3.08881 3.18791 3.28450 3.95093 4.20069 4.35508 4.49097 4.89694 4.94538 5.26599 5.29298 5.31675 5.39842 5.57814 5.62481 5.68628 5.78120 5.83863 5.97371 6.00915 6.04596 6.18198 6.25404 6.26906 6.29017 6.38545 6.49481 6.65983 6.74678 6.76351 6.92339 7.04665 7.14251 7.28608 7.39007 7.58807 7.72775 7.84113 7.92641 8.07296 8.23427 8.33233 8.61688 8.77538 10.05532 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028313 B = 0.004173 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.700262 B = 6707.754243 C = 7011.659752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.047 4.047 3 C -0.142 4.142 4 C -0.144 4.144 5 C -0.074 4.074 6 C -0.205 4.205 7 C 0.227 3.773 8 N -0.874 5.874 9 C -0.102 4.102 10 C -0.011 4.011 11 C -0.226 4.226 12 C -0.078 4.078 13 C -0.236 4.236 14 C 0.095 3.905 15 C -0.451 4.451 16 H 0.090 0.910 17 C 0.085 3.915 18 N -0.809 5.809 19 Si 0.911 3.089 20 H -0.271 1.271 21 H -0.292 1.292 22 H -0.245 1.245 23 C -0.205 4.205 24 C -0.059 4.059 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.112 0.888 33 H 0.114 0.886 34 H 0.409 0.591 35 H 0.390 0.610 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.285 0.715 40 H 0.103 0.897 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.191 8.814 -2.890 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.066 4.066 3 C -0.200 4.200 4 C -0.146 4.146 5 C -0.093 4.093 6 C -0.228 4.228 7 C 0.121 3.879 8 N -0.414 5.414 9 C -0.107 4.107 10 C -0.011 4.011 11 C -0.246 4.246 12 C -0.097 4.097 13 C -0.255 4.255 14 C 0.092 3.908 15 C -0.480 4.480 16 H 0.108 0.892 17 C -0.134 4.134 18 N -0.434 5.434 19 Si 0.738 3.262 20 H -0.197 1.197 21 H -0.219 1.219 22 H -0.168 1.168 23 C -0.225 4.225 24 C -0.078 4.078 25 H 0.072 0.928 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.242 0.758 35 H 0.217 0.783 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.121 0.879 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.928 8.694 -2.796 15.828 hybrid contribution -0.100 -0.956 0.413 1.046 sum -13.027 7.738 -2.384 15.339 Atomic orbital electron populations 1.21851 0.95116 1.01739 1.01204 1.19949 0.95247 0.95582 0.95784 1.21856 1.01313 0.95608 1.01190 1.19384 1.02921 0.98149 0.94146 1.20540 0.98606 0.98602 0.91536 1.20397 1.05560 0.98297 0.98563 1.17774 0.92121 0.90946 0.87079 1.42839 1.59346 1.34241 1.04997 1.18538 1.02793 0.98144 0.91196 1.18334 0.93872 0.91926 0.96994 1.20431 1.01562 0.96019 1.06566 1.20554 0.94611 0.96458 0.98032 1.21090 0.99482 1.01314 1.03638 1.17649 0.91702 0.91061 0.90413 1.19471 1.03218 0.94633 1.30647 0.89227 1.26135 0.94978 1.00316 0.91942 1.69698 1.14532 1.26423 1.32709 0.86316 0.82690 0.79793 0.77400 1.19690 1.21925 1.16837 1.21100 0.95353 1.00512 1.05515 1.20868 0.95505 0.93928 0.97483 0.92765 0.93041 0.92675 0.90994 0.92572 0.93043 0.92761 0.87007 0.86830 0.75777 0.78269 0.88725 0.88756 0.88292 0.90488 0.87900 0.86400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.01 37.16 0.33 -1.07 16 2 C -0.05 -0.54 3.09 -91.77 -0.28 -0.82 16 3 C -0.14 -1.45 9.01 37.16 0.33 -1.11 16 4 C -0.14 -2.02 4.78 -104.64 -0.50 -2.52 16 5 C -0.07 -1.00 8.69 -39.56 -0.34 -1.34 16 6 C -0.21 -2.96 9.88 -39.42 -0.39 -3.35 16 7 C 0.23 3.80 6.67 -83.54 -0.56 3.25 16 8 N -0.87 -13.65 8.63 32.55 0.28 -13.37 16 9 C -0.10 -1.88 5.48 -104.72 -0.57 -2.46 16 10 C -0.01 -0.23 5.07 -104.98 -0.53 -0.76 16 11 C -0.23 -4.71 9.51 -38.96 -0.37 -5.09 16 12 C -0.08 -1.69 10.01 -39.72 -0.40 -2.08 16 13 C -0.24 -5.64 7.17 -38.82 -0.28 -5.92 16 14 C 0.09 2.36 5.10 -106.87 -0.55 1.81 16 15 C -0.45 -12.04 9.57 -37.74 -0.36 -12.40 16 16 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 17 C 0.08 2.20 5.40 -17.35 -0.09 2.11 16 18 N -0.81 -21.45 13.93 55.55 0.77 -20.67 16 19 Si 0.91 20.59 24.52 -169.99 -4.17 16.42 16 20 H -0.27 -5.98 6.71 56.52 0.38 -5.60 16 21 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.25 -5.63 6.86 56.52 0.39 -5.25 16 23 C -0.21 -4.68 7.45 -38.52 -0.29 -4.96 16 24 C -0.06 -0.97 9.11 -39.28 -0.36 -1.33 16 25 H 0.05 0.51 7.37 -51.93 -0.38 0.13 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.82 7.86 -51.93 -0.41 0.41 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.52 7.37 -51.93 -0.38 0.14 16 32 H 0.11 1.25 7.07 -52.48 -0.37 0.88 16 33 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 34 H 0.41 7.18 5.99 -40.82 -0.24 6.93 16 35 H 0.39 4.85 8.84 -40.82 -0.36 4.49 16 36 H 0.09 1.78 8.03 -52.49 -0.42 1.36 16 37 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.10 2.37 4.72 -52.49 -0.25 2.12 16 39 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 40 H 0.10 2.30 7.50 -52.48 -0.39 1.90 16 41 H 0.12 1.88 7.91 -52.49 -0.42 1.46 16 LS Contribution 330.47 15.07 4.98 4.98 Total: -1.00 -27.30 330.47 -9.09 -36.40 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -5.76 Total: 14.30 kcal Atomic # 6 Polarization: -32.85 SS G_CDS: -5.20 Total: -38.05 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 1.05 Total: -34.04 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.17 Total: 16.42 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.30 -9.09 -36.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244214071.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.875 kcal (2) G-P(sol) polarization free energy of solvation -27.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.396 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds