Wall clock time and date at job start Tue Mar 31 2020 05:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46966 * 2 1 4 4 C 1.50701 * 109.47058 * 119.99673 * 2 1 3 5 5 C 1.38555 * 119.83779 * 299.99903 * 4 2 1 6 6 C 1.38112 * 120.39161 * 179.97438 * 5 4 2 7 7 C 1.38796 * 120.06511 * 0.02562 * 6 5 4 8 8 N 1.39227 * 120.16106 * 179.69636 * 7 6 5 9 9 C 1.40336 * 119.67282 * 359.97438 * 7 6 5 10 10 C 1.47790 * 120.18992 * 179.97438 * 9 7 6 11 11 C 1.40035 * 119.89461 * 129.72241 * 10 9 7 12 12 C 1.36195 * 120.11598 * 179.75673 * 11 10 9 13 13 C 1.40962 * 119.88457 * 0.51621 * 12 11 10 14 14 C 1.40976 * 120.10574 * 179.71824 * 13 12 11 15 15 H 1.07998 * 120.00358 * 24.73194 * 14 13 12 16 16 C 1.39978 * 119.99699 * 204.72792 * 14 13 12 17 17 N 1.30825 * 119.99777 * 17.98757 * 16 14 13 18 18 Si 1.86799 * 119.99789 * 197.98528 * 16 14 13 19 19 H 1.48491 * 109.47216 * 0.02562 * 18 16 14 20 20 H 1.48501 * 109.46921 * 120.00215 * 18 16 14 21 21 H 1.48503 * 109.46834 * 239.99832 * 18 16 14 22 22 C 1.40963 * 119.78195 * 359.73936 * 13 12 11 23 23 C 1.36192 * 119.88617 * 359.97438 * 22 13 12 24 24 C 1.37853 * 119.83487 * 119.97856 * 4 2 1 25 25 H 1.08998 * 109.47025 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46549 * 300.00063 * 1 2 3 27 27 H 1.08998 * 109.46931 * 60.00036 * 1 2 3 28 28 H 1.08998 * 109.46696 * 239.99566 * 2 1 3 29 29 H 1.08999 * 109.46569 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.46766 * 299.99931 * 3 2 1 31 31 H 1.08996 * 109.47304 * 59.99982 * 3 2 1 32 32 H 1.08001 * 119.80684 * 359.97438 * 5 4 2 33 33 H 1.08001 * 119.96499 * 179.97438 * 6 5 4 34 34 H 0.96996 * 119.99845 * 0.02562 * 8 7 6 35 35 H 0.97003 * 119.99854 * 179.97438 * 8 7 6 36 36 H 1.08006 * 119.94029 * 0.02562 * 11 10 9 37 37 H 1.07998 * 120.05632 * 180.25302 * 12 11 10 38 38 H 0.96997 * 119.99453 * 179.97438 * 17 16 14 39 39 H 1.07999 * 120.05637 * 179.97438 * 22 13 12 40 40 H 1.07992 * 119.94623 * 180.02562 * 23 22 13 41 41 H 1.08009 * 120.03385 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 1.6956 -0.2340 2.4873 6 6 2.1492 -0.8764 3.6226 7 6 2.9479 -2.0059 3.5103 8 7 3.4115 -2.6514 4.6535 9 6 3.2907 -2.4908 2.2387 10 6 4.1409 -3.6923 2.1058 11 6 3.7398 -4.7422 1.2706 12 6 4.5222 -5.8494 1.1409 13 6 5.7325 -5.9421 1.8577 14 6 6.5431 -7.0885 1.7316 15 1 6.4835 -7.6968 0.8411 16 6 7.4253 -7.4385 2.7604 17 7 7.2636 -6.9392 3.9588 18 14 8.8333 -8.6186 2.4223 19 1 8.7972 -9.0371 0.9981 20 1 10.1247 -7.9426 2.7065 21 1 8.6978 -9.8134 3.2936 22 6 6.1292 -4.8848 2.7014 23 6 5.3426 -3.7793 2.8197 24 6 2.8243 -1.8311 1.1001 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 1.0747 0.6449 2.5796 33 1 1.8829 -0.4989 4.5988 34 1 3.1761 -2.3120 5.5311 35 1 3.9692 -3.4409 4.5722 36 1 2.8104 -4.6720 0.7249 37 1 4.2139 -6.6568 0.4933 38 1 7.8747 -7.1821 4.6718 39 1 7.0554 -4.9512 3.2529 40 1 5.6459 -2.9685 3.4655 41 1 3.0834 -2.1988 0.1181 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244215638.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:09 Heat of formation + Delta-G solvation = 16.015584 kcal Electronic energy + Delta-G solvation = -20914.737557 eV Core-core repulsion = 17950.499666 eV Total energy + Delta-G solvation = -2964.237891 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.35918 -37.45936 -35.81951 -33.80601 -32.81674 -31.24716 -29.54724 -28.86292 -27.47157 -27.02938 -25.10919 -22.51953 -22.15704 -20.78515 -20.62014 -18.93821 -17.39854 -16.60918 -16.38155 -15.52333 -15.12032 -14.55708 -14.14489 -13.82116 -13.60585 -13.33249 -13.16088 -13.05954 -12.64887 -12.41904 -12.32362 -12.10469 -12.01357 -11.79516 -11.37781 -11.21596 -11.10600 -11.02927 -10.76110 -10.63551 -10.31106 -10.23698 -9.88397 -9.65557 -9.43605 -9.29343 -8.31952 -7.60854 -7.39015 -6.89091 -6.68179 -4.39798 1.85941 2.13380 2.72696 3.01607 3.05911 3.07179 3.15904 3.85255 4.34111 4.49444 4.60225 5.00230 5.04057 5.37526 5.43055 5.50991 5.62896 5.68956 5.72981 5.87821 5.90299 5.90637 6.07820 6.14620 6.23282 6.29217 6.36169 6.37264 6.43126 6.59610 6.82364 6.93361 6.94104 7.00236 7.17653 7.25659 7.30997 7.44461 7.56620 7.85961 7.97835 8.05883 8.11937 8.21110 8.35992 8.54883 8.79286 8.89959 10.05824 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030872 B = 0.003694 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.749404 B = 7577.973821 C = 8093.387988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.047 4.047 3 C -0.141 4.141 4 C -0.140 4.140 5 C -0.088 4.088 6 C -0.204 4.204 7 C 0.212 3.788 8 N -0.876 5.876 9 C -0.066 4.066 10 C -0.186 4.186 11 C -0.068 4.068 12 C -0.228 4.228 13 C 0.114 3.886 14 C -0.455 4.455 15 H 0.080 0.920 16 C 0.075 3.925 17 N -0.786 5.786 18 Si 0.908 3.092 19 H -0.259 1.259 20 H -0.271 1.271 21 H -0.274 1.274 22 C -0.167 4.167 23 C -0.091 4.091 24 C -0.076 4.076 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.049 0.951 31 H 0.053 0.947 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.387 0.613 35 H 0.407 0.593 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.281 0.719 39 H 0.117 0.883 40 H 0.089 0.911 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.051 10.096 -1.377 12.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.066 4.066 3 C -0.199 4.199 4 C -0.142 4.142 5 C -0.107 4.107 6 C -0.227 4.227 7 C 0.106 3.894 8 N -0.416 5.416 9 C -0.070 4.070 10 C -0.188 4.188 11 C -0.087 4.087 12 C -0.247 4.247 13 C 0.112 3.888 14 C -0.484 4.484 15 H 0.098 0.902 16 C -0.143 4.143 17 N -0.411 5.411 18 Si 0.733 3.267 19 H -0.183 1.183 20 H -0.196 1.196 21 H -0.199 1.199 22 C -0.187 4.187 23 C -0.110 4.110 24 C -0.095 4.095 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.073 0.927 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.214 0.786 35 H 0.240 0.760 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.135 0.865 40 H 0.107 0.893 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.950 10.068 -1.158 12.289 hybrid contribution 0.754 -0.762 0.407 1.147 sum -6.196 9.306 -0.751 11.205 Atomic orbital electron populations 1.21847 0.95215 1.01714 1.01080 1.19949 0.95185 0.95506 0.95945 1.21845 1.01225 0.95721 1.01071 1.19362 1.02765 0.98113 0.93937 1.20463 0.99641 0.98984 0.91570 1.20355 1.05589 0.98503 0.98280 1.17885 0.92725 0.91436 0.87325 1.42681 1.59604 1.34388 1.04891 1.18497 1.00858 0.97149 0.90498 1.17954 0.97980 0.95199 1.07651 1.20335 0.97574 0.93637 0.97141 1.20674 0.96970 0.98919 1.08168 1.17677 0.89813 0.91945 0.89377 1.19641 1.17489 1.08464 1.02820 0.90233 1.25964 0.97807 0.96375 0.94194 1.69828 1.33213 1.37055 1.01010 0.86255 0.80611 0.79863 0.80021 1.18285 1.19607 1.19916 1.20983 1.00721 0.93035 1.03922 1.20480 0.94595 0.97161 0.98773 1.20927 0.96874 0.94179 0.97544 0.92683 0.92814 0.93150 0.91094 0.92660 0.93160 0.92812 0.87386 0.87276 0.78589 0.76037 0.89367 0.88964 0.90776 0.86492 0.89299 0.86778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.01 37.16 0.33 -1.20 16 2 C -0.05 -0.59 3.09 -91.77 -0.28 -0.87 16 3 C -0.14 -1.54 9.01 37.16 0.33 -1.21 16 4 C -0.14 -2.12 4.78 -104.65 -0.50 -2.62 16 5 C -0.09 -1.28 8.69 -39.51 -0.34 -1.63 16 6 C -0.20 -3.17 9.88 -39.42 -0.39 -3.56 16 7 C 0.21 3.75 6.68 -83.51 -0.56 3.19 16 8 N -0.88 -14.27 8.60 32.58 0.28 -13.99 16 9 C -0.07 -1.28 5.48 -104.69 -0.57 -1.85 16 10 C -0.19 -4.10 5.11 -104.64 -0.53 -4.63 16 11 C -0.07 -1.54 9.44 -39.64 -0.37 -1.92 16 12 C -0.23 -5.51 9.73 -39.29 -0.38 -5.90 16 13 C 0.11 2.97 5.57 -106.80 -0.60 2.38 16 14 C -0.46 -11.76 9.03 -37.89 -0.34 -12.10 16 15 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 16 C 0.08 1.83 5.13 -17.33 -0.09 1.74 16 17 N -0.79 -19.56 10.96 55.55 0.61 -18.95 16 18 Si 0.91 18.10 29.60 -169.99 -5.03 13.07 16 19 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 20 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 21 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 22 C -0.17 -4.21 8.63 -39.29 -0.34 -4.54 16 23 C -0.09 -2.09 7.63 -39.64 -0.30 -2.39 16 24 C -0.08 -1.35 9.12 -39.21 -0.36 -1.70 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.05 0.56 7.37 -51.93 -0.38 0.17 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.88 7.86 -51.93 -0.41 0.47 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.56 7.37 -51.93 -0.38 0.18 16 32 H 0.11 1.33 7.07 -52.49 -0.37 0.96 16 33 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 34 H 0.39 5.08 8.84 -40.82 -0.36 4.72 16 35 H 0.41 7.38 5.97 -40.82 -0.24 7.14 16 36 H 0.09 1.81 8.04 -52.48 -0.42 1.39 16 37 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 38 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 39 H 0.12 3.03 6.16 -52.49 -0.32 2.71 16 40 H 0.09 1.90 7.47 -52.49 -0.39 1.51 16 41 H 0.11 1.97 7.92 -52.48 -0.42 1.55 16 LS Contribution 335.44 15.07 5.05 5.05 Total: -1.00 -26.49 335.44 -10.17 -36.66 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: -5.79 Total: 16.95 kcal Atomic # 6 Polarization: -33.50 SS G_CDS: -5.29 Total: -38.80 kcal Atomic # 7 Polarization: -33.83 SS G_CDS: 0.89 Total: -32.94 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -26.49 -10.17 -36.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244215638.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.677 kcal (2) G-P(sol) polarization free energy of solvation -26.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds