Wall clock time and date at job start Tue Mar 31 2020 05:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47591 * 2 1 4 4 C 1.50705 * 109.47103 * 119.99848 * 2 1 3 5 5 C 1.38564 * 119.83213 * 300.00138 * 4 2 1 6 6 C 1.38119 * 120.40193 * 179.97438 * 5 4 2 7 7 C 1.38785 * 120.06893 * 359.97438 * 6 5 4 8 8 N 1.39215 * 120.16707 * 179.97438 * 7 6 5 9 9 C 1.40381 * 119.67036 * 0.02562 * 7 6 5 10 10 C 1.47673 * 120.19810 * 179.97438 * 9 7 6 11 11 C 1.39289 * 120.34210 * 244.99661 * 10 9 7 12 12 C 1.38003 * 119.97485 * 180.25338 * 11 10 9 13 13 C 1.38980 * 120.68657 * 359.44269 * 12 11 10 14 14 C 1.36394 * 120.70839 * 0.56191 * 13 12 11 15 15 C 1.40765 * 119.99676 * 359.72099 * 14 13 12 16 16 C 1.40827 * 120.33938 * 180.02562 * 15 14 13 17 17 H 1.07993 * 119.99726 * 205.15794 * 16 15 14 18 18 C 1.40034 * 119.99834 * 25.15983 * 16 15 14 19 19 N 1.30797 * 120.00137 * 17.32391 * 18 16 15 20 20 Si 1.86797 * 119.99773 * 197.31907 * 18 16 15 21 21 H 1.48500 * 109.47170 * 90.00158 * 20 18 16 22 22 H 1.48508 * 109.47060 * 210.00085 * 20 18 16 23 23 H 1.48494 * 109.47387 * 329.99955 * 20 18 16 24 24 C 1.37845 * 119.83493 * 120.23077 * 4 2 1 25 25 H 1.09007 * 109.46992 * 300.00364 * 1 2 3 26 26 H 1.08999 * 109.46967 * 59.99800 * 1 2 3 27 27 H 1.08999 * 109.47539 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47266 * 239.99495 * 2 1 3 29 29 H 1.08998 * 109.46713 * 59.99577 * 3 2 1 30 30 H 1.08997 * 109.47048 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.46400 * 299.99966 * 3 2 1 32 32 H 1.07998 * 119.79875 * 359.95303 * 5 4 2 33 33 H 1.07996 * 119.96497 * 179.97438 * 6 5 4 34 34 H 0.97003 * 120.00178 * 180.02562 * 8 7 6 35 35 H 0.97004 * 119.99830 * 0.02650 * 8 7 6 36 36 H 1.08004 * 120.01495 * 359.97438 * 11 10 9 37 37 H 1.08000 * 119.65976 * 179.69630 * 12 11 10 38 38 H 1.07996 * 119.64717 * 180.30817 * 13 12 11 39 39 H 1.08005 * 120.00453 * 179.70630 * 14 13 12 40 40 H 0.97001 * 119.99738 * 179.97438 * 19 18 16 41 41 H 1.08003 * 120.03918 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.6954 -0.2340 2.4873 6 6 2.1489 -0.8762 3.6229 7 6 2.9467 -2.0063 3.5111 8 7 3.4053 -2.6548 4.6543 9 6 3.2898 -2.4915 2.2392 10 6 4.1385 -3.6927 2.1066 11 6 5.4064 -3.5991 1.5376 12 6 6.1911 -4.7274 1.4126 13 6 5.7350 -5.9616 1.8601 14 6 4.4982 -6.0853 2.4215 15 6 3.6710 -4.9546 2.5581 16 6 2.3929 -5.0740 3.1373 17 1 1.6202 -4.3605 2.8919 18 6 2.1240 -6.1177 4.0313 19 7 3.1101 -6.7697 4.5910 20 14 0.3571 -6.5787 4.4245 21 1 -0.1101 -7.6119 3.4655 22 1 0.2816 -7.1162 5.8068 23 1 -0.5050 -5.3748 4.3139 24 6 2.8285 -1.8281 1.1001 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6767 1.9563 0.8899 30 1 3.1301 1.4424 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.0748 0.6450 2.5794 33 1 1.8823 -0.4985 4.5990 34 1 3.9631 -3.4443 4.5733 35 1 3.1670 -2.3173 5.5320 36 1 5.7736 -2.6446 1.1902 37 1 7.1714 -4.6498 0.9662 38 1 6.3651 -6.8328 1.7585 39 1 4.1533 -7.0509 2.7611 40 1 2.9238 -7.4925 5.2105 41 1 3.0916 -2.1929 0.1182 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244222686.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:12 Heat of formation + Delta-G solvation = 17.382836 kcal Electronic energy + Delta-G solvation = -21740.573842 eV Core-core repulsion = 18776.395240 eV Total energy + Delta-G solvation = -2964.178603 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -39.14056 -37.34291 -35.49485 -33.73963 -32.46957 -31.34543 -29.58035 -28.45259 -26.93432 -26.89697 -25.18393 -22.60051 -21.86176 -20.77841 -20.48381 -18.63358 -17.23861 -16.32781 -16.08598 -15.42035 -14.97714 -14.54127 -14.07916 -13.67777 -13.56223 -13.12628 -13.03508 -12.92692 -12.62345 -12.17201 -12.14735 -12.08040 -11.81925 -11.63762 -11.24356 -11.12417 -10.94903 -10.88957 -10.72034 -10.47167 -10.27445 -10.14598 -9.66044 -9.56686 -9.35036 -9.20021 -8.04051 -7.43545 -7.36261 -6.84850 -6.39765 -4.37566 2.15841 2.42834 2.75034 3.01201 3.04326 3.09009 3.21644 3.89576 4.57192 4.66114 4.87026 5.16036 5.19872 5.52105 5.58877 5.68219 5.76005 5.81035 5.88877 6.03107 6.06216 6.09333 6.22552 6.24603 6.35443 6.41136 6.49901 6.51230 6.64714 6.71058 6.85056 7.01899 7.14924 7.21243 7.25841 7.35735 7.47351 7.59853 7.69476 7.92761 8.04418 8.10127 8.25298 8.45557 8.61456 8.74630 8.84523 8.94699 10.09399 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014847 B = 0.006510 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.493986 B = 4299.805836 C = 5275.319145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.045 4.045 3 C -0.140 4.140 4 C -0.151 4.151 5 C -0.082 4.082 6 C -0.216 4.216 7 C 0.240 3.760 8 N -0.858 5.858 9 C -0.060 4.060 10 C -0.176 4.176 11 C -0.074 4.074 12 C -0.245 4.245 13 C -0.104 4.104 14 C -0.162 4.162 15 C 0.122 3.878 16 C -0.439 4.439 17 H 0.080 0.920 18 C 0.079 3.921 19 N -0.791 5.791 20 Si 0.902 3.098 21 H -0.268 1.268 22 H -0.279 1.279 23 H -0.261 1.261 24 C -0.072 4.072 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.410 0.590 35 H 0.384 0.616 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.117 0.883 40 H 0.280 0.720 41 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.779 8.485 -2.266 9.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.063 4.063 3 C -0.198 4.198 4 C -0.154 4.154 5 C -0.101 4.101 6 C -0.239 4.239 7 C 0.132 3.868 8 N -0.394 5.394 9 C -0.065 4.065 10 C -0.178 4.178 11 C -0.092 4.092 12 C -0.264 4.264 13 C -0.123 4.123 14 C -0.181 4.181 15 C 0.119 3.881 16 C -0.468 4.468 17 H 0.098 0.902 18 C -0.140 4.140 19 N -0.416 5.416 20 Si 0.726 3.274 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.185 1.185 24 C -0.091 4.091 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.123 0.877 33 H 0.124 0.876 34 H 0.242 0.758 35 H 0.210 0.790 36 H 0.106 0.894 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.135 0.865 40 H 0.091 0.909 41 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -2.731 8.287 -2.088 8.972 hybrid contribution -0.658 -0.581 0.652 1.094 sum -3.389 7.705 -1.436 8.539 Atomic orbital electron populations 1.21845 0.95379 1.01759 1.00866 1.19906 0.95094 0.95286 0.96049 1.21844 1.01069 0.95934 1.00914 1.19251 1.03720 0.98639 0.93742 1.20415 0.99310 0.98734 0.91647 1.20327 1.06307 0.99216 0.98076 1.17847 0.91336 0.90155 0.87447 1.42466 1.58585 1.33904 1.04410 1.18222 1.01482 0.96367 0.90419 1.18489 0.94584 0.91646 1.13052 1.20597 0.93874 0.96250 0.98481 1.20258 1.00055 0.93751 1.12377 1.20452 0.96511 0.95800 0.99503 1.21047 0.94706 0.99100 1.03289 1.17574 0.92399 0.89332 0.88767 1.19466 0.97240 1.09097 1.20977 0.90239 1.25903 0.98810 0.94753 0.94484 1.69806 1.33191 1.17649 1.20955 0.86398 0.83095 0.79833 0.78035 1.19309 1.20431 1.18528 1.20901 0.96501 0.94348 0.97371 0.92867 0.93372 0.92618 0.91321 0.92863 0.92791 0.93360 0.87738 0.87556 0.75783 0.79047 0.89446 0.89686 0.89735 0.86516 0.90880 0.87239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.01 37.16 0.33 -1.44 16 2 C -0.04 -0.62 3.09 -91.77 -0.28 -0.90 16 3 C -0.14 -1.68 9.01 37.16 0.33 -1.35 16 4 C -0.15 -2.57 4.78 -104.64 -0.50 -3.07 16 5 C -0.08 -1.37 8.69 -39.50 -0.34 -1.71 16 6 C -0.22 -3.84 9.88 -39.42 -0.39 -4.23 16 7 C 0.24 4.81 6.06 -83.50 -0.51 4.30 16 8 N -0.86 -16.48 8.36 32.59 0.27 -16.21 16 9 C -0.06 -1.29 4.39 -104.71 -0.46 -1.75 16 10 C -0.18 -4.10 4.57 -104.24 -0.48 -4.58 16 11 C -0.07 -1.65 9.73 -39.28 -0.38 -2.03 16 12 C -0.25 -5.43 10.03 -39.39 -0.40 -5.83 16 13 C -0.10 -2.40 9.96 -39.97 -0.40 -2.79 16 14 C -0.16 -4.04 8.63 -39.29 -0.34 -4.38 16 15 C 0.12 3.05 4.72 -106.55 -0.50 2.54 16 16 C -0.44 -10.92 7.08 -37.93 -0.27 -11.19 16 17 H 0.08 2.06 7.09 -52.49 -0.37 1.68 16 18 C 0.08 1.87 5.14 -17.32 -0.09 1.78 16 19 N -0.79 -19.10 10.97 55.55 0.61 -18.49 16 20 Si 0.90 18.46 29.59 -169.99 -5.03 13.43 16 21 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 22 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 24 C -0.07 -1.41 9.36 -39.19 -0.37 -1.77 16 25 H 0.05 0.65 7.37 -51.93 -0.38 0.26 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.95 7.86 -51.93 -0.41 0.54 16 29 H 0.05 0.62 7.37 -51.93 -0.38 0.23 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.10 1.49 7.07 -52.49 -0.37 1.12 16 33 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.41 8.86 6.61 -40.82 -0.27 8.59 16 35 H 0.38 6.20 8.84 -40.82 -0.36 5.84 16 36 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 37 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 38 H 0.08 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.12 3.01 6.19 -52.48 -0.32 2.68 16 40 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 41 H 0.11 2.07 7.93 -52.48 -0.42 1.66 16 LS Contribution 333.79 15.07 5.03 5.03 Total: -1.00 -25.53 333.79 -9.96 -35.48 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: -5.81 Total: 19.16 kcal Atomic # 6 Polarization: -33.37 SS G_CDS: -5.03 Total: -38.40 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: 0.88 Total: -34.70 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -25.53 -9.96 -35.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244222686.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.866 kcal (2) G-P(sol) polarization free energy of solvation -25.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds