Wall clock time and date at job start Tue Mar 31 2020 05:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50697 * 109.47239 * 2 1 4 4 C 1.37882 * 119.97562 * 264.99820 * 3 2 1 5 5 C 1.39376 * 119.95294 * 179.97438 * 4 3 2 6 6 C 1.48348 * 120.04758 * 179.97438 * 5 4 3 7 7 C 1.39365 * 120.11686 * 359.72824 * 6 5 4 8 8 C 1.38019 * 119.87195 * 179.76571 * 7 6 5 9 9 C 1.38328 * 120.11854 * 0.50981 * 8 7 6 10 10 C 1.50703 * 119.87055 * 179.76231 * 9 8 7 11 11 C 1.50693 * 109.47336 * 269.97915 * 10 9 8 12 12 H 1.07999 * 120.00118 * 359.97438 * 11 10 9 13 13 C 1.37884 * 120.00129 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99918 * 180.02562 * 13 11 10 15 15 Si 1.86805 * 119.99753 * 359.97438 * 13 11 10 16 16 H 1.48500 * 109.46894 * 90.00639 * 15 13 11 17 17 H 1.48500 * 109.46635 * 210.00616 * 15 13 11 18 18 H 1.48497 * 109.47279 * 330.00568 * 15 13 11 19 19 C 1.38323 * 120.25451 * 359.74067 * 9 8 7 20 20 C 1.38016 * 120.11978 * 0.02562 * 19 9 8 21 21 C 1.39426 * 119.91187 * 0.02562 * 5 4 3 22 22 C 1.37835 * 119.95063 * 359.97438 * 21 5 4 23 23 C 1.38999 * 119.97887 * 84.71848 * 3 2 1 24 24 N 1.39561 * 119.95487 * 0.02885 * 23 3 2 25 25 H 1.09001 * 109.47002 * 60.00070 * 1 2 3 26 26 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47050 * 300.00336 * 1 2 3 28 28 H 1.09001 * 109.46998 * 119.99373 * 2 1 3 29 29 H 1.09000 * 109.47050 * 239.99664 * 2 1 3 30 30 H 1.08000 * 120.01883 * 359.95510 * 4 3 2 31 31 H 1.07998 * 120.06648 * 0.02562 * 7 6 5 32 32 H 1.07994 * 119.94122 * 180.24642 * 8 7 6 33 33 H 1.09001 * 109.47063 * 29.97744 * 10 9 8 34 34 H 1.09001 * 109.47262 * 149.97686 * 10 9 8 35 35 H 0.97003 * 119.99596 * 180.02562 * 14 13 11 36 36 H 1.07998 * 119.93678 * 180.02562 * 19 9 8 37 37 H 1.07998 * 120.05886 * 180.02562 * 20 19 9 38 38 H 1.07997 * 120.02509 * 180.02562 * 21 5 4 39 39 H 1.08004 * 119.97314 * 180.02562 * 22 21 5 40 40 H 0.96997 * 119.99949 * 359.97438 * 24 23 3 41 41 H 0.97001 * 119.99816 * 179.97438 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3602 2.0356 -1.1898 5 6 2.8243 3.3498 -1.1893 6 6 3.1782 4.0131 -2.4682 7 6 3.0530 3.3225 -3.6722 8 6 3.3790 3.9461 -4.8595 9 6 3.8393 5.2505 -4.8549 10 6 4.1988 5.9242 -6.1541 11 6 5.6532 5.6779 -6.4621 12 1 6.2570 5.0925 -5.7847 13 6 6.2133 6.2009 -7.6084 14 7 7.4825 5.9855 -7.8774 15 14 5.1690 7.2142 -8.7799 16 1 5.2369 8.6458 -8.3914 17 1 5.6801 7.0522 -10.1647 18 1 3.7600 6.7499 -8.7148 19 6 3.9704 5.9390 -3.6624 20 6 3.6428 5.3269 -2.4696 21 6 2.9566 4.0400 0.0149 22 6 2.6277 3.4217 1.2021 23 6 2.1595 2.1125 1.1989 24 7 1.8221 1.4902 2.4017 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8934 -0.5137 0.8901 29 1 1.8934 -0.5139 -0.8900 30 1 2.2578 1.4989 -2.1215 31 1 2.6975 2.3026 -3.6766 32 1 3.2786 3.4133 -5.7935 33 1 3.5835 5.5175 -6.9567 34 1 4.0220 6.9964 -6.0685 35 1 7.8766 6.3538 -8.6837 36 1 4.3299 6.9574 -3.6647 37 1 3.7451 5.8655 -1.5391 38 1 3.3156 5.0585 0.0174 39 1 2.7297 3.9562 2.1351 40 1 1.4989 0.5757 2.4005 41 1 1.9109 1.9722 3.2387 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244295967.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:50 Heat of formation + Delta-G solvation = 27.777597 kcal Electronic energy + Delta-G solvation = -20339.475164 eV Core-core repulsion = 17375.747312 eV Total energy + Delta-G solvation = -2963.727852 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -39.92793 -38.43918 -35.19149 -33.86908 -33.20814 -31.54572 -30.60228 -29.53288 -28.84485 -26.39849 -24.19514 -23.25625 -22.45696 -21.40755 -20.68075 -19.59239 -17.33999 -17.10293 -16.75288 -16.16681 -15.09950 -14.73595 -14.29596 -14.27165 -14.10050 -13.70563 -13.53311 -13.39710 -13.26327 -12.85253 -12.50810 -12.45663 -12.14334 -12.00093 -11.68888 -11.62028 -11.27618 -11.02649 -10.92752 -10.65679 -10.54770 -10.11665 -9.96579 -9.90398 -9.35623 -8.76355 -8.57130 -8.30513 -8.20806 -6.95333 -6.06009 -4.05013 1.19733 1.45669 2.06354 2.43034 3.29625 3.37337 3.40416 3.73488 3.89626 4.42674 4.60291 4.64711 4.72239 4.93013 5.09844 5.18079 5.22459 5.26210 5.38494 5.41988 5.52905 5.55658 5.66613 5.70377 5.86157 5.90970 6.01121 6.06146 6.12664 6.18165 6.32461 6.41570 6.58930 6.66921 6.72447 6.87341 6.98763 7.04319 7.13821 7.20702 7.39419 7.58684 7.62957 7.63449 7.74559 8.51422 8.99850 9.54235 11.06980 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034795 B = 0.003069 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.515531 B = 9122.117466 C = 9473.158114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.075 4.075 3 C -0.159 4.159 4 C -0.066 4.066 5 C -0.079 4.079 6 C -0.069 4.069 7 C -0.114 4.114 8 C -0.120 4.120 9 C -0.028 4.028 10 C 0.013 3.987 11 C -0.512 4.512 12 H 0.074 0.926 13 C 0.068 3.932 14 N -0.900 5.900 15 Si 0.878 3.122 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.264 1.264 19 C -0.120 4.120 20 C -0.114 4.114 21 C -0.071 4.071 22 C -0.193 4.193 23 C 0.210 3.790 24 N -0.880 5.880 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.123 0.877 31 H 0.114 0.886 32 H 0.119 0.881 33 H 0.028 0.972 34 H 0.023 0.977 35 H 0.264 0.736 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.124 0.876 39 H 0.118 0.882 40 H 0.395 0.605 41 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.004 -9.268 19.160 25.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.113 4.113 3 C -0.164 4.164 4 C -0.084 4.084 5 C -0.080 4.080 6 C -0.069 4.069 7 C -0.132 4.132 8 C -0.138 4.138 9 C -0.028 4.028 10 C -0.024 4.024 11 C -0.550 4.550 12 H 0.092 0.908 13 C -0.133 4.133 14 N -0.539 5.539 15 Si 0.705 3.295 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.189 1.189 19 C -0.138 4.138 20 C -0.132 4.132 21 C -0.090 4.090 22 C -0.216 4.216 23 C 0.106 3.894 24 N -0.421 5.421 25 H 0.077 0.923 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.141 0.859 31 H 0.132 0.868 32 H 0.137 0.863 33 H 0.046 0.954 34 H 0.041 0.959 35 H 0.074 0.926 36 H 0.137 0.863 37 H 0.132 0.868 38 H 0.142 0.858 39 H 0.136 0.864 40 H 0.224 0.776 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -13.851 -9.222 18.988 25.248 hybrid contribution -0.312 0.438 -0.338 0.635 sum -14.164 -8.784 18.650 25.012 Atomic orbital electron populations 1.21780 0.95164 1.01300 1.02332 1.20325 0.95760 0.92880 1.02315 1.19217 1.08469 0.96834 0.91847 1.20893 0.96723 0.93932 0.96896 1.18608 1.03080 0.93957 0.92397 1.18513 1.02581 0.94132 0.91644 1.21059 1.01140 0.99045 0.91982 1.20982 1.00220 0.95020 0.97550 1.20335 0.92304 0.93749 0.96425 1.18829 0.98009 0.95338 0.90236 1.20942 0.92507 1.33922 1.07642 0.90802 1.25008 0.94826 0.95908 0.97552 1.69904 1.11872 1.45620 1.26492 0.86802 0.81306 0.80958 0.80435 1.20170 1.21271 1.18906 1.20985 1.00626 1.00348 0.91843 1.21059 1.00200 0.94275 0.97700 1.20978 0.97399 0.99413 0.91185 1.20452 1.08509 0.94186 0.98432 1.17583 0.94037 0.91727 0.86039 1.42482 1.76419 1.17429 1.05730 0.92304 0.92702 0.92851 0.91954 0.90966 0.85882 0.86815 0.86295 0.95420 0.95860 0.92616 0.86289 0.86772 0.85845 0.86436 0.77565 0.77747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.90 37.16 0.37 -0.77 16 2 C -0.08 -0.64 5.48 -27.88 -0.15 -0.80 16 3 C -0.16 -1.78 5.15 -104.47 -0.54 -2.32 16 4 C -0.07 -0.86 9.05 -39.29 -0.36 -1.21 16 5 C -0.08 -1.14 5.88 -104.87 -0.62 -1.76 16 6 C -0.07 -1.14 5.88 -104.90 -0.62 -1.76 16 7 C -0.11 -1.95 9.43 -39.24 -0.37 -2.32 16 8 C -0.12 -2.32 9.68 -39.63 -0.38 -2.71 16 9 C -0.03 -0.60 5.07 -104.56 -0.53 -1.13 16 10 C 0.01 0.31 4.17 -29.04 -0.12 0.19 16 11 C -0.51 -14.68 9.65 -34.44 -0.33 -15.01 16 12 H 0.07 2.33 7.98 -52.49 -0.42 1.91 16 13 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 14 N -0.90 -27.78 13.96 55.43 0.77 -27.01 16 15 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16 16 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 18 H -0.26 -6.19 6.54 56.52 0.37 -5.82 16 19 C -0.12 -2.33 9.68 -39.63 -0.38 -2.71 16 20 C -0.11 -1.95 9.43 -39.25 -0.37 -2.32 16 21 C -0.07 -0.92 9.42 -39.29 -0.37 -1.29 16 22 C -0.19 -2.17 9.88 -39.43 -0.39 -2.56 16 23 C 0.21 2.23 6.74 -83.76 -0.56 1.66 16 24 N -0.88 -6.36 8.98 32.43 0.29 -6.07 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.45 6.82 -51.93 -0.35 0.10 16 29 H 0.07 0.61 8.05 -51.93 -0.42 0.19 16 30 H 0.12 1.48 6.20 -52.49 -0.33 1.15 16 31 H 0.11 1.63 6.20 -52.49 -0.33 1.30 16 32 H 0.12 2.21 8.06 -52.49 -0.42 1.78 16 33 H 0.03 0.66 7.14 -51.93 -0.37 0.29 16 34 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16 35 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 36 H 0.12 2.20 8.06 -52.49 -0.42 1.78 16 37 H 0.11 1.63 6.20 -52.49 -0.33 1.30 16 38 H 0.12 1.45 6.20 -52.49 -0.33 1.12 16 39 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 40 H 0.40 2.33 6.92 -40.82 -0.28 2.05 16 41 H 0.39 2.13 8.84 -40.82 -0.36 1.77 16 LS Contribution 336.05 15.07 5.06 5.06 Total: -1.00 -31.98 336.05 -9.96 -41.94 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -5.60 Total: 4.17 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: -5.82 Total: -34.91 kcal Atomic # 7 Polarization: -34.15 SS G_CDS: 1.06 Total: -33.08 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.98 -9.96 -41.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244295967.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.718 kcal (2) G-P(sol) polarization free energy of solvation -31.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds