Wall clock time and date at job start Tue Mar 31 2020 05:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50706 * 109.46833 * 2 1 4 4 C 1.37708 * 119.96358 * 265.00322 * 3 2 1 5 5 C 1.39724 * 119.93035 * 180.02562 * 4 3 2 6 6 C 1.47840 * 120.06889 * 180.02562 * 5 4 3 7 7 C 1.40036 * 119.88518 * 0.02562 * 6 5 4 8 8 C 1.36192 * 120.10925 * 179.71579 * 7 6 5 9 9 C 1.40973 * 119.88119 * 0.51780 * 8 7 6 10 10 C 1.40989 * 120.10356 * 179.75961 * 9 8 7 11 11 H 1.08000 * 119.99628 * 206.55643 * 10 9 8 12 12 C 1.39954 * 120.00269 * 26.56191 * 10 9 8 13 13 N 1.30832 * 120.00131 * 16.45687 * 12 10 9 14 14 Si 1.86794 * 120.00211 * 196.45358 * 12 10 9 15 15 H 1.48503 * 109.47295 * 265.19112 * 14 12 10 16 16 H 1.48498 * 109.47147 * 25.18752 * 14 12 10 17 17 H 1.48501 * 109.47432 * 145.18744 * 14 12 10 18 18 C 1.40939 * 119.78096 * 359.48728 * 9 8 7 19 19 C 1.50708 * 120.05495 * 180.27018 * 18 9 8 20 20 C 1.36216 * 119.88571 * 0.25192 * 18 9 8 21 21 C 1.39772 * 119.86641 * 0.27344 * 5 4 3 22 22 C 1.37676 * 119.92777 * 359.46574 * 21 5 4 23 23 C 1.39158 * 119.96355 * 85.02433 * 3 2 1 24 24 N 1.39319 * 119.93426 * 359.97438 * 23 3 2 25 25 H 1.09004 * 109.47031 * 299.99627 * 1 2 3 26 26 H 1.08995 * 109.47400 * 59.99766 * 1 2 3 27 27 H 1.09005 * 109.47103 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46979 * 239.99936 * 2 1 3 29 29 H 1.08995 * 109.47400 * 120.00234 * 2 1 3 30 30 H 1.08002 * 120.03834 * 359.97229 * 4 3 2 31 31 H 1.07996 * 119.94544 * 359.97438 * 7 6 5 32 32 H 1.08002 * 120.05302 * 180.25970 * 8 7 6 33 33 H 0.96994 * 120.00335 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.46377 * 90.00460 * 19 18 9 35 35 H 1.08994 * 109.46853 * 209.99735 * 19 18 9 36 36 H 1.08998 * 109.47440 * 330.00423 * 19 18 9 37 37 H 1.07998 * 119.93824 * 180.02562 * 20 18 9 38 38 H 1.07998 * 120.03383 * 179.73076 * 21 5 4 39 39 H 1.07995 * 119.96883 * 180.25351 * 22 21 5 40 40 H 0.96993 * 120.00014 * 359.97438 * 24 23 3 41 41 H 0.97000 * 119.99712 * 179.97438 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3595 2.0347 -1.1885 5 6 2.8256 3.3519 -1.1876 6 6 3.1773 4.0141 -2.4618 7 6 3.0419 3.3190 -3.6700 8 6 3.3590 3.9265 -4.8469 9 6 3.8345 5.2536 -4.8465 10 6 4.1690 5.8853 -6.0618 11 1 4.9005 6.6797 -6.0739 12 6 3.5530 5.4830 -7.2523 13 7 2.4581 4.7679 -7.2132 14 14 4.2939 5.9672 -8.8973 15 1 3.6407 7.2070 -9.3887 16 1 5.7501 6.2068 -8.7329 17 1 4.0799 4.8728 -9.8780 18 6 3.9690 5.9486 -3.6278 19 6 4.4710 7.3696 -3.6208 20 6 3.6441 5.3339 -2.4565 21 6 2.9638 4.0406 0.0208 22 6 2.6299 3.4233 1.2052 23 6 2.1654 2.1110 1.2010 24 7 1.8334 1.4873 2.4017 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.2568 1.4983 -2.1202 31 1 2.6814 2.3010 -3.6687 32 1 3.2502 3.3910 -5.7785 33 1 2.0314 4.4887 -8.0383 34 1 3.6267 8.0535 -3.7072 35 1 5.0012 7.5629 -2.6883 36 1 5.1481 7.5200 -4.4617 37 1 3.7465 5.8659 -1.5222 38 1 3.3279 5.0573 0.0249 39 1 2.7325 3.9562 2.1389 40 1 1.5096 0.5730 2.4000 41 1 1.9262 1.9673 3.2395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244304471.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:53 Heat of formation + Delta-G solvation = 19.251641 kcal Electronic energy + Delta-G solvation = -20846.872955 eV Core-core repulsion = 17882.775390 eV Total energy + Delta-G solvation = -2964.097565 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.32613 -37.72952 -34.82115 -33.50735 -33.40709 -31.61007 -29.92606 -29.28093 -27.57491 -26.10632 -24.43313 -23.60554 -22.02682 -21.40154 -19.66646 -19.02431 -17.33748 -16.73728 -16.63640 -15.42311 -15.09029 -14.31545 -14.14707 -13.81777 -13.61758 -13.14758 -13.05741 -12.93236 -12.84952 -12.56914 -12.09131 -11.93876 -11.84363 -11.54112 -11.25902 -11.17777 -11.09396 -11.02730 -10.91571 -10.65253 -10.41599 -10.29955 -9.91449 -9.49069 -9.28932 -9.14023 -8.29134 -7.71682 -7.37831 -6.84788 -6.51340 -4.30662 1.85204 1.94552 2.84709 3.03784 3.08448 3.10662 3.27435 3.87965 4.15051 4.34162 4.78273 5.04363 5.08503 5.38832 5.49207 5.62583 5.67277 5.75200 5.84962 5.91511 6.01264 6.07526 6.23267 6.24239 6.28746 6.39155 6.46114 6.60623 6.68012 6.71660 6.78349 6.91557 7.00046 7.09202 7.16175 7.27757 7.40120 7.48703 7.66409 7.81821 7.98347 7.98886 8.03456 8.17265 8.27267 8.58994 8.82946 8.95101 10.11115 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026713 B = 0.003876 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.928135 B = 7222.873142 C = 8121.528690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.073 4.073 3 C -0.153 4.153 4 C -0.092 4.092 5 C -0.031 4.031 6 C -0.184 4.184 7 C -0.086 4.086 8 C -0.166 4.166 9 C 0.120 3.880 10 C -0.451 4.451 11 H 0.083 0.917 12 C 0.074 3.926 13 N -0.786 5.786 14 Si 0.907 3.093 15 H -0.270 1.270 16 H -0.260 1.260 17 H -0.275 1.275 18 C -0.199 4.199 19 C -0.083 4.083 20 C -0.070 4.070 21 C -0.099 4.099 22 C -0.186 4.186 23 C 0.181 3.819 24 N -0.886 5.886 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.118 0.882 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.282 0.718 34 H 0.045 0.955 35 H 0.036 0.964 36 H 0.057 0.943 37 H 0.091 0.909 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.391 0.609 41 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.553 -5.571 10.892 12.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.157 4.157 4 C -0.110 4.110 5 C -0.032 4.032 6 C -0.185 4.185 7 C -0.104 4.104 8 C -0.185 4.185 9 C 0.118 3.882 10 C -0.480 4.480 11 H 0.101 0.899 12 C -0.144 4.144 13 N -0.411 5.411 14 Si 0.731 3.269 15 H -0.195 1.195 16 H -0.183 1.183 17 H -0.200 1.200 18 C -0.201 4.201 19 C -0.140 4.140 20 C -0.088 4.088 21 C -0.117 4.117 22 C -0.209 4.209 23 C 0.080 3.920 24 N -0.427 5.427 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.136 0.864 31 H 0.108 0.892 32 H 0.134 0.866 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.135 0.865 39 H 0.128 0.872 40 H 0.220 0.780 41 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -1.724 -5.644 10.665 12.189 hybrid contribution 0.044 0.054 -0.459 0.464 sum -1.680 -5.591 10.205 11.757 Atomic orbital electron populations 1.21770 0.95441 1.00907 1.02342 1.20291 0.95584 0.93380 1.01797 1.19153 1.08134 0.96386 0.92020 1.20875 0.99153 0.94566 0.96429 1.18787 0.98577 0.93017 0.92852 1.18056 1.14208 0.95369 0.90844 1.20506 0.99760 0.97611 0.92537 1.20946 1.05802 0.95223 0.96552 1.17544 0.88125 0.90883 0.91681 1.19639 1.20228 1.16891 0.91207 0.89911 1.25957 0.93593 0.93387 1.01487 1.69832 1.13376 1.27502 1.30353 0.86314 0.80793 0.79015 0.80761 1.19509 1.18336 1.19979 1.19443 1.11231 0.95920 0.93479 1.20397 0.99428 0.94324 0.99858 1.20241 0.98860 0.93709 0.96017 1.20945 0.99999 0.99417 0.91387 1.20367 1.08369 0.94049 0.98101 1.17457 0.96783 0.91955 0.85854 1.42297 1.77600 1.17219 1.05594 0.92921 0.92300 0.93038 0.91316 0.92311 0.86408 0.89220 0.86594 0.90737 0.93661 0.94503 0.92417 0.89103 0.86491 0.87249 0.78011 0.78241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.89 37.16 0.37 -1.27 16 2 C -0.07 -0.89 5.49 -27.88 -0.15 -1.04 16 3 C -0.15 -2.36 5.15 -104.47 -0.54 -2.90 16 4 C -0.09 -1.66 9.04 -39.22 -0.35 -2.01 16 5 C -0.03 -0.61 5.88 -104.84 -0.62 -1.23 16 6 C -0.18 -4.18 5.90 -104.63 -0.62 -4.79 16 7 C -0.09 -2.03 9.36 -39.64 -0.37 -2.40 16 8 C -0.17 -4.28 8.61 -39.28 -0.34 -4.61 16 9 C 0.12 3.14 5.56 -106.80 -0.59 2.55 16 10 C -0.45 -11.56 8.42 -37.90 -0.32 -11.88 16 11 H 0.08 2.03 6.26 -52.49 -0.33 1.70 16 12 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 13 N -0.79 -19.91 11.00 55.55 0.61 -19.30 16 14 Si 0.91 18.17 29.59 -169.99 -5.03 13.14 16 15 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 16 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 17 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 18 C -0.20 -4.79 5.90 -104.32 -0.62 -5.41 16 19 C -0.08 -1.72 9.61 36.01 0.35 -1.37 16 20 C -0.07 -1.59 8.99 -39.65 -0.36 -1.95 16 21 C -0.10 -1.77 9.42 -39.21 -0.37 -2.14 16 22 C -0.19 -2.90 9.87 -39.43 -0.39 -3.28 16 23 C 0.18 2.66 6.74 -83.76 -0.56 2.10 16 24 N -0.89 -9.49 8.97 32.45 0.29 -9.20 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 29 H 0.06 0.62 6.80 -51.93 -0.35 0.27 16 30 H 0.12 2.09 6.17 -52.49 -0.32 1.76 16 31 H 0.09 1.92 6.17 -52.49 -0.32 1.60 16 32 H 0.12 3.06 6.25 -52.49 -0.33 2.74 16 33 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 34 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.04 0.66 8.08 -51.93 -0.42 0.24 16 36 H 0.06 1.17 6.25 -51.93 -0.32 0.85 16 37 H 0.09 1.84 6.17 -52.49 -0.32 1.52 16 38 H 0.12 1.99 6.17 -52.49 -0.32 1.66 16 39 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 40 H 0.39 3.60 6.91 -40.82 -0.28 3.32 16 41 H 0.39 3.40 8.83 -40.82 -0.36 3.04 16 LS Contribution 330.90 15.07 4.99 4.99 Total: -1.00 -27.69 330.90 -10.07 -37.76 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -5.36 Total: 12.52 kcal Atomic # 6 Polarization: -34.34 SS G_CDS: -5.57 Total: -39.91 kcal Atomic # 7 Polarization: -29.40 SS G_CDS: 0.90 Total: -28.49 kcal Atomic # 14 Polarization: 18.17 SS G_CDS: -5.03 Total: 13.14 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.69 -10.07 -37.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244304471.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.008 kcal (2) G-P(sol) polarization free energy of solvation -27.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds