Wall clock time and date at job start Tue Mar 31 2020 05:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50706 * 109.46833 * 2 1 4 4 C 1.37708 * 119.96358 * 265.00322 * 3 2 1 5 5 C 1.39724 * 119.93035 * 180.02562 * 4 3 2 6 6 C 1.47840 * 120.06889 * 180.02562 * 5 4 3 7 7 C 1.40036 * 119.88518 * 0.02562 * 6 5 4 8 8 C 1.36192 * 120.10925 * 179.71579 * 7 6 5 9 9 C 1.40973 * 119.88119 * 0.51780 * 8 7 6 10 10 C 1.40989 * 120.10356 * 179.75961 * 9 8 7 11 11 H 1.08000 * 119.99628 * 206.55643 * 10 9 8 12 12 C 1.39954 * 120.00269 * 26.56191 * 10 9 8 13 13 N 1.30832 * 120.00131 * 16.45687 * 12 10 9 14 14 Si 1.86794 * 120.00211 * 196.45358 * 12 10 9 15 15 H 1.48503 * 109.47295 * 265.19112 * 14 12 10 16 16 H 1.48498 * 109.47147 * 25.18752 * 14 12 10 17 17 H 1.48501 * 109.47432 * 145.18744 * 14 12 10 18 18 C 1.40939 * 119.78096 * 359.48728 * 9 8 7 19 19 C 1.50708 * 120.05495 * 180.27018 * 18 9 8 20 20 C 1.36216 * 119.88571 * 0.25192 * 18 9 8 21 21 C 1.39772 * 119.86641 * 0.27344 * 5 4 3 22 22 C 1.37676 * 119.92777 * 359.46574 * 21 5 4 23 23 C 1.39158 * 119.96355 * 85.02433 * 3 2 1 24 24 N 1.39319 * 119.93426 * 359.97438 * 23 3 2 25 25 H 1.09004 * 109.47031 * 299.99627 * 1 2 3 26 26 H 1.08995 * 109.47400 * 59.99766 * 1 2 3 27 27 H 1.09005 * 109.47103 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46979 * 239.99936 * 2 1 3 29 29 H 1.08995 * 109.47400 * 120.00234 * 2 1 3 30 30 H 1.08002 * 120.03834 * 359.97229 * 4 3 2 31 31 H 1.07996 * 119.94544 * 359.97438 * 7 6 5 32 32 H 1.08002 * 120.05302 * 180.25970 * 8 7 6 33 33 H 0.96994 * 120.00335 * 180.02562 * 13 12 10 34 34 H 1.09000 * 109.46377 * 90.00460 * 19 18 9 35 35 H 1.08994 * 109.46853 * 209.99735 * 19 18 9 36 36 H 1.08998 * 109.47440 * 330.00423 * 19 18 9 37 37 H 1.07998 * 119.93824 * 180.02562 * 20 18 9 38 38 H 1.07998 * 120.03383 * 179.73076 * 21 5 4 39 39 H 1.07995 * 119.96883 * 180.25351 * 22 21 5 40 40 H 0.96993 * 120.00014 * 359.97438 * 24 23 3 41 41 H 0.97000 * 119.99712 * 179.97438 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3595 2.0347 -1.1885 5 6 2.8256 3.3519 -1.1876 6 6 3.1773 4.0141 -2.4618 7 6 3.0419 3.3190 -3.6700 8 6 3.3590 3.9265 -4.8469 9 6 3.8345 5.2536 -4.8465 10 6 4.1690 5.8853 -6.0618 11 1 4.9005 6.6797 -6.0739 12 6 3.5530 5.4830 -7.2523 13 7 2.4581 4.7679 -7.2132 14 14 4.2939 5.9672 -8.8973 15 1 3.6407 7.2070 -9.3887 16 1 5.7501 6.2068 -8.7329 17 1 4.0799 4.8728 -9.8780 18 6 3.9690 5.9486 -3.6278 19 6 4.4710 7.3696 -3.6208 20 6 3.6441 5.3339 -2.4565 21 6 2.9638 4.0406 0.0208 22 6 2.6299 3.4233 1.2052 23 6 2.1654 2.1110 1.2010 24 7 1.8334 1.4873 2.4017 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.2568 1.4983 -2.1202 31 1 2.6814 2.3010 -3.6687 32 1 3.2502 3.3910 -5.7785 33 1 2.0314 4.4887 -8.0383 34 1 3.6267 8.0535 -3.7072 35 1 5.0012 7.5629 -2.6883 36 1 5.1481 7.5200 -4.4617 37 1 3.7465 5.8659 -1.5222 38 1 3.3279 5.0573 0.0249 39 1 2.7325 3.9562 2.1389 40 1 1.5096 0.5730 2.4000 41 1 1.9262 1.9673 3.2395 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244304471.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:53 Heat of formation + Delta-G solvation = 6.337598 kcal Electronic energy + Delta-G solvation = -20847.432950 eV Core-core repulsion = 17882.775390 eV Total energy + Delta-G solvation = -2964.657560 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.67320 -39.41744 -36.26952 -35.06696 -34.55484 -33.28981 -31.63254 -30.50165 -29.08883 -27.75957 -26.12142 -24.74336 -23.44969 -22.94814 -21.23102 -20.56933 -19.12302 -17.98117 -17.81053 -17.08929 -16.54085 -15.82769 -15.62844 -15.04064 -14.92349 -14.56093 -14.53369 -14.37871 -14.28648 -14.09164 -13.60110 -13.49472 -13.11446 -12.94170 -12.82702 -12.78367 -12.63452 -12.51967 -12.31331 -12.10059 -11.74067 -11.62469 -11.39184 -11.23529 -11.02112 -10.89135 -9.58448 -9.33358 -9.21720 -8.63358 -7.95063 -6.18624 0.35599 0.64663 1.19758 1.27030 1.39136 1.52643 1.65059 2.21142 2.72105 3.15991 3.20528 3.81418 3.92720 4.03176 4.20227 4.34994 4.40425 4.49199 4.54573 4.64108 4.69868 4.73859 4.76323 4.94036 5.03594 5.05123 5.06032 5.16998 5.18259 5.29337 5.31903 5.35239 5.43736 5.48707 5.56407 5.68531 5.82219 5.87469 6.05075 6.16359 6.22308 6.40231 6.42050 6.72290 6.75049 6.95998 7.09343 7.13471 8.34478 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026713 B = 0.003876 C = 0.003447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.928135 B = 7222.873142 C = 8121.528690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.072 4.072 3 C -0.162 4.162 4 C -0.098 4.098 5 C -0.076 4.076 6 C -0.173 4.173 7 C -0.101 4.101 8 C -0.188 4.188 9 C 0.084 3.916 10 C -0.485 4.485 11 H 0.085 0.915 12 C 0.033 3.967 13 N -0.825 5.825 14 Si 0.980 3.020 15 H -0.262 1.262 16 H -0.257 1.257 17 H -0.269 1.269 18 C -0.212 4.212 19 C -0.078 4.078 20 C -0.085 4.085 21 C -0.099 4.099 22 C -0.192 4.192 23 C 0.199 3.801 24 N -0.866 5.866 25 H 0.057 0.943 26 H 0.038 0.962 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.083 0.917 30 H 0.110 0.890 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.287 0.713 34 H 0.049 0.951 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.117 0.883 38 H 0.122 0.878 39 H 0.140 0.860 40 H 0.403 0.597 41 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.733 -6.224 13.787 15.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 C -0.166 4.166 4 C -0.117 4.117 5 C -0.078 4.078 6 C -0.174 4.174 7 C -0.120 4.120 8 C -0.208 4.208 9 C 0.081 3.919 10 C -0.514 4.514 11 H 0.103 0.897 12 C -0.182 4.182 13 N -0.451 5.451 14 Si 0.801 3.199 15 H -0.187 1.187 16 H -0.181 1.181 17 H -0.193 1.193 18 C -0.214 4.214 19 C -0.135 4.135 20 C -0.103 4.103 21 C -0.118 4.118 22 C -0.215 4.215 23 C 0.094 3.906 24 N -0.407 5.407 25 H 0.076 0.924 26 H 0.058 0.942 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.127 0.873 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.097 0.903 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.135 0.865 38 H 0.140 0.860 39 H 0.158 0.842 40 H 0.233 0.767 41 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -1.915 -6.317 13.618 15.134 hybrid contribution 0.006 0.078 -0.963 0.966 sum -1.909 -6.239 12.655 14.238 Atomic orbital electron populations 1.21736 0.94495 1.02234 1.01611 1.20358 0.96278 0.91382 1.02941 1.19460 1.07726 0.98030 0.91414 1.20946 0.99188 0.94129 0.97412 1.18765 1.02342 0.94303 0.92356 1.18471 1.11674 0.95426 0.91869 1.20697 1.00264 0.98410 0.92599 1.20924 1.07549 0.95739 0.96558 1.17902 0.89560 0.91373 0.93039 1.19840 1.21430 1.18050 0.92118 0.89747 1.26790 0.93515 0.93079 1.04791 1.69902 1.14691 1.29063 1.31476 0.85224 0.79805 0.78853 0.76049 1.18718 1.18054 1.19319 1.19910 1.10695 0.97502 0.93261 1.20381 0.99640 0.92322 1.01120 1.20556 0.98981 0.94024 0.96717 1.21069 0.99597 0.99662 0.91467 1.20658 1.07850 0.94558 0.98421 1.17597 0.94451 0.91673 0.86855 1.42271 1.75850 1.17736 1.04878 0.92425 0.94241 0.90741 0.91529 0.89895 0.87253 0.88055 0.88451 0.90253 0.93247 0.91804 0.92794 0.86538 0.86028 0.84215 0.76653 0.76504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.89 71.98 0.71 -2.08 16 2 C -0.07 -1.56 5.49 29.85 0.16 -1.39 16 3 C -0.16 -4.65 5.15 -19.77 -0.10 -4.75 16 4 C -0.10 -3.52 9.04 22.50 0.20 -3.32 16 5 C -0.08 -3.01 5.88 -20.01 -0.12 -3.13 16 6 C -0.17 -8.09 5.90 -19.87 -0.12 -8.20 16 7 C -0.10 -5.06 9.36 22.23 0.21 -4.85 16 8 C -0.19 -10.35 8.61 22.46 0.19 -10.16 16 9 C 0.08 4.60 5.56 -21.27 -0.12 4.48 16 10 C -0.49 -26.12 8.42 23.36 0.20 -25.92 16 11 H 0.08 4.32 6.26 -2.91 -0.02 4.30 16 12 C 0.03 1.68 5.14 85.26 0.44 2.12 16 13 N -0.83 -44.05 11.00 21.83 0.24 -43.81 16 14 Si 0.98 38.44 29.59 68.60 2.03 40.47 16 15 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 16 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 17 H -0.27 -10.12 7.11 99.48 0.71 -9.42 16 18 C -0.21 -10.49 5.90 -19.67 -0.12 -10.61 16 19 C -0.08 -3.22 9.61 71.24 0.68 -2.53 16 20 C -0.08 -3.90 8.99 22.23 0.20 -3.70 16 21 C -0.10 -3.39 9.42 22.51 0.21 -3.17 16 22 C -0.19 -5.33 9.87 22.37 0.22 -5.11 16 23 C 0.20 5.12 6.74 38.41 0.26 5.38 16 24 N -0.87 -14.39 8.97 -51.26 -0.46 -14.85 16 25 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.07 1.48 8.05 -2.39 -0.02 1.46 16 29 H 0.08 1.39 6.80 -2.39 -0.02 1.37 16 30 H 0.11 3.99 6.17 -2.91 -0.02 3.97 16 31 H 0.10 4.62 6.17 -2.91 -0.02 4.60 16 32 H 0.10 5.58 6.25 -2.91 -0.02 5.56 16 33 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 34 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.06 2.23 8.08 -2.39 -0.02 2.21 16 36 H 0.05 2.23 6.25 -2.39 -0.01 2.21 16 37 H 0.12 4.63 6.17 -2.91 -0.02 4.61 16 38 H 0.12 3.92 6.17 -2.91 -0.02 3.90 16 39 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 40 H 0.40 5.36 6.91 -92.71 -0.64 4.72 16 41 H 0.41 4.94 8.83 -92.71 -0.82 4.12 16 Total: -1.00 -63.34 330.90 4.54 -58.79 By element: Atomic # 1 Polarization: 36.74 SS G_CDS: -0.39 Total: 36.35 kcal Atomic # 6 Polarization: -80.07 SS G_CDS: 3.12 Total: -76.95 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.22 Total: -58.67 kcal Atomic # 14 Polarization: 38.44 SS G_CDS: 2.03 Total: 40.47 kcal Total: -63.34 4.54 -58.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244304471.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.132 kcal (2) G-P(sol) polarization free energy of solvation -63.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds