Wall clock time and date at job start Tue Mar 31 2020 05:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50701 * 109.47141 * 2 1 4 4 C 1.37704 * 119.96383 * 100.00285 * 3 2 1 5 5 C 1.39723 * 119.93198 * 179.97438 * 4 3 2 6 6 C 1.47832 * 120.06877 * 180.02562 * 5 4 3 7 7 C 1.40041 * 119.89120 * 309.99969 * 6 5 4 8 8 C 1.36181 * 120.11665 * 180.27625 * 7 6 5 9 9 C 1.40977 * 119.88215 * 359.52340 * 8 7 6 10 10 C 1.40980 * 120.10922 * 180.25129 * 9 8 7 11 11 H 1.07999 * 120.00050 * 204.82413 * 10 9 8 12 12 C 1.39967 * 120.00171 * 24.82973 * 10 9 8 13 13 N 1.30833 * 119.99732 * 17.85502 * 12 10 9 14 14 Si 1.86799 * 120.00010 * 197.85464 * 12 10 9 15 15 H 1.48501 * 109.47237 * 359.97438 * 14 12 10 16 16 H 1.48498 * 109.47083 * 120.00053 * 14 12 10 17 17 H 1.48503 * 109.46774 * 240.00043 * 14 12 10 18 18 C 1.40943 * 119.77903 * 0.47737 * 9 8 7 19 19 C 1.36215 * 119.88487 * 359.75505 * 18 9 8 20 20 C 1.50691 * 119.94540 * 180.02562 * 19 18 9 21 21 C 1.39773 * 119.86565 * 0.27735 * 5 4 3 22 22 C 1.37668 * 119.92463 * 359.46489 * 21 5 4 23 23 C 1.39156 * 119.96350 * 280.02007 * 3 2 1 24 24 N 1.39322 * 119.93498 * 359.97438 * 23 3 2 25 25 H 1.09000 * 109.47260 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46427 * 299.99656 * 1 2 3 27 27 H 1.08994 * 109.47077 * 59.99949 * 1 2 3 28 28 H 1.09004 * 109.46703 * 239.99886 * 2 1 3 29 29 H 1.09002 * 109.47237 * 120.00298 * 2 1 3 30 30 H 1.07999 * 120.03812 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.94283 * 0.02562 * 7 6 5 32 32 H 1.08004 * 120.05702 * 179.72437 * 8 7 6 33 33 H 0.97001 * 119.99641 * 180.02562 * 13 12 10 34 34 H 1.07995 * 120.05655 * 179.77465 * 18 9 8 35 35 H 1.09002 * 109.47396 * 270.02286 * 20 19 18 36 36 H 1.09011 * 109.46817 * 30.01885 * 20 19 18 37 37 H 1.08998 * 109.47152 * 150.01764 * 20 19 18 38 38 H 1.07998 * 120.03209 * 179.70197 * 21 5 4 39 39 H 1.08000 * 119.96701 * 180.25367 * 22 21 5 40 40 H 0.96991 * 120.00113 * 359.97438 * 24 23 3 41 41 H 0.96997 * 119.99428 * 179.97438 * 24 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.4570 2.0002 1.1749 5 6 2.9232 3.3174 1.1740 6 6 3.3803 3.9421 2.4334 7 6 2.5716 3.8836 3.5752 8 6 2.9856 4.4624 4.7363 9 6 4.2353 5.1127 4.7902 10 6 4.6710 5.7089 5.9911 11 1 5.3846 6.5191 5.9639 12 6 4.1789 5.2508 7.2187 13 7 3.6058 4.0773 7.2968 14 14 4.3405 6.3148 8.7455 15 1 5.0222 7.5862 8.3930 16 1 2.9901 6.6105 9.2880 17 1 5.1382 5.5934 9.7694 18 6 5.0455 5.1689 3.6383 19 6 4.6201 4.5909 2.4805 20 6 5.4855 4.6497 1.2482 21 6 2.9514 4.0449 -0.0191 22 6 2.5306 3.4583 -1.1913 23 6 2.0663 2.1460 -1.1872 24 7 1.6362 1.5569 -2.3742 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3632 0.5138 0.8901 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 2.4306 1.4368 2.0959 31 1 1.6160 3.3819 3.5338 32 1 2.3592 4.4205 5.6150 33 1 3.2644 3.7599 8.1475 34 1 6.0019 5.6691 3.6736 35 1 5.2436 5.5458 0.6767 36 1 6.5348 4.6785 1.5422 37 1 5.3041 3.7674 0.6345 38 1 3.3067 5.0648 -0.0220 39 1 2.5560 4.0185 -2.1143 40 1 1.3139 0.6422 -2.3727 41 1 1.6591 2.0618 -3.2022 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244305715.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:10:56 Heat of formation + Delta-G solvation = 17.241282 kcal Electronic energy + Delta-G solvation = -20988.486752 eV Core-core repulsion = 18024.302012 eV Total energy + Delta-G solvation = -2964.184741 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.39960 -37.67601 -34.83976 -33.52553 -33.45513 -31.27639 -30.34762 -29.16449 -27.67123 -25.79194 -24.66232 -23.59218 -22.03724 -20.81124 -20.18120 -19.27683 -16.91106 -16.85194 -16.60137 -15.52020 -15.12664 -14.21956 -14.04594 -13.82681 -13.64281 -13.37495 -13.23516 -12.99963 -12.75979 -12.49444 -12.21061 -11.92762 -11.82805 -11.64098 -11.48292 -11.29264 -11.04026 -10.91753 -10.87902 -10.55174 -10.34182 -10.15854 -10.07969 -9.51999 -9.34839 -9.10707 -8.29852 -7.55492 -7.29831 -6.80900 -6.68428 -4.31746 1.91358 1.98157 2.80382 3.06304 3.11752 3.13623 3.22033 3.91249 4.10806 4.33389 4.65140 5.03136 5.07487 5.38150 5.46293 5.61873 5.66804 5.74541 5.84154 5.94923 6.01343 6.06401 6.08400 6.19384 6.21752 6.36529 6.40060 6.45829 6.60858 6.66491 6.75682 6.91792 7.04598 7.05807 7.21089 7.31063 7.42140 7.44605 7.67886 7.78454 7.94064 8.01771 8.08141 8.20152 8.30217 8.64323 8.87975 8.99843 10.14557 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.027263 B = 0.003913 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.793544 B = 7154.348617 C = 7929.219103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.073 4.073 3 C -0.160 4.160 4 C -0.076 4.076 5 C -0.037 4.037 6 C -0.187 4.187 7 C -0.079 4.079 8 C -0.172 4.172 9 C 0.117 3.883 10 C -0.457 4.457 11 H 0.078 0.922 12 C 0.076 3.924 13 N -0.787 5.787 14 Si 0.907 3.093 15 H -0.260 1.260 16 H -0.271 1.271 17 H -0.274 1.274 18 C -0.226 4.226 19 C -0.043 4.043 20 C -0.106 4.106 21 C -0.080 4.080 22 C -0.196 4.196 23 C 0.192 3.808 24 N -0.885 5.885 25 H 0.051 0.949 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.116 0.884 31 H 0.087 0.913 32 H 0.116 0.884 33 H 0.281 0.719 34 H 0.091 0.909 35 H 0.053 0.947 36 H 0.049 0.951 37 H 0.057 0.943 38 H 0.117 0.883 39 H 0.110 0.890 40 H 0.392 0.608 41 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.979 -4.917 -12.424 13.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.165 4.165 4 C -0.095 4.095 5 C -0.038 4.038 6 C -0.188 4.188 7 C -0.098 4.098 8 C -0.191 4.191 9 C 0.114 3.886 10 C -0.486 4.486 11 H 0.097 0.903 12 C -0.143 4.143 13 N -0.412 5.412 14 Si 0.731 3.269 15 H -0.183 1.183 16 H -0.196 1.196 17 H -0.200 1.200 18 C -0.246 4.246 19 C -0.043 4.043 20 C -0.163 4.163 21 C -0.099 4.099 22 C -0.218 4.218 23 C 0.090 3.910 24 N -0.426 5.426 25 H 0.070 0.930 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.134 0.866 31 H 0.105 0.895 32 H 0.134 0.866 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.135 0.865 39 H 0.128 0.872 40 H 0.221 0.779 41 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -4.057 -5.062 -12.189 13.808 hybrid contribution -0.056 0.250 0.503 0.564 sum -4.113 -4.812 -11.686 13.291 Atomic orbital electron populations 1.21777 0.95519 1.00941 1.02285 1.20296 0.95511 0.93379 1.01912 1.19174 1.08439 0.96393 0.92472 1.20993 0.97673 0.94478 0.96358 1.18723 0.99233 0.92762 0.93130 1.17911 0.97472 1.11035 0.92361 1.20452 0.97372 0.99178 0.92798 1.20960 0.97137 1.04249 0.96742 1.17650 0.90162 0.88850 0.91921 1.19610 1.22503 1.16149 0.90325 0.90347 1.25950 0.92941 0.94342 1.01053 1.69851 1.28272 1.15473 1.27573 0.86280 0.78977 0.81076 0.80533 1.18339 1.19650 1.19966 1.20515 1.00153 1.09703 0.94227 1.19089 0.93814 0.97209 0.94222 1.20787 0.98235 1.00815 0.96439 1.21073 0.98143 0.99127 0.91554 1.20396 1.08726 0.94198 0.98486 1.17496 0.95352 0.92090 0.86066 1.42337 1.75608 1.17145 1.07497 0.93011 0.92351 0.92902 0.92286 0.91237 0.86557 0.89494 0.86608 0.90850 0.89050 0.92823 0.93179 0.92417 0.86506 0.87204 0.77933 0.78179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.79 37.16 0.36 -1.22 16 2 C -0.07 -0.88 5.42 -27.88 -0.15 -1.03 16 3 C -0.16 -2.42 5.15 -104.48 -0.54 -2.96 16 4 C -0.08 -1.36 9.11 -39.22 -0.36 -1.72 16 5 C -0.04 -0.71 4.71 -104.84 -0.49 -1.21 16 6 C -0.19 -4.20 5.49 -104.63 -0.57 -4.77 16 7 C -0.08 -1.90 9.43 -39.65 -0.37 -2.27 16 8 C -0.17 -4.48 8.62 -39.28 -0.34 -4.82 16 9 C 0.12 3.12 5.57 -106.80 -0.60 2.52 16 10 C -0.46 -12.09 9.03 -37.90 -0.34 -12.43 16 11 H 0.08 2.00 7.91 -52.49 -0.42 1.58 16 12 C 0.08 1.89 5.13 -17.33 -0.09 1.80 16 13 N -0.79 -20.23 10.96 55.55 0.61 -19.63 16 14 Si 0.91 18.51 29.60 -169.99 -5.03 13.48 16 15 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 16 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 17 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 18 C -0.23 -5.60 9.36 -39.29 -0.37 -5.97 16 19 C -0.04 -0.98 5.83 -104.69 -0.61 -1.59 16 20 C -0.11 -1.96 8.43 36.00 0.30 -1.66 16 21 C -0.08 -1.39 7.88 -39.22 -0.31 -1.70 16 22 C -0.20 -2.92 9.87 -39.43 -0.39 -3.31 16 23 C 0.19 2.72 6.74 -83.76 -0.56 2.16 16 24 N -0.88 -9.11 8.85 32.45 0.29 -8.83 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.55 7.52 -51.93 -0.39 0.16 16 28 H 0.06 0.62 7.08 -51.93 -0.37 0.25 16 29 H 0.07 0.84 8.00 -51.93 -0.42 0.42 16 30 H 0.12 2.09 8.01 -52.49 -0.42 1.67 16 31 H 0.09 1.92 8.03 -52.48 -0.42 1.50 16 32 H 0.12 3.11 6.17 -52.48 -0.32 2.79 16 33 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 34 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 35 H 0.05 0.90 7.49 -51.93 -0.39 0.51 16 36 H 0.05 0.87 8.08 -51.92 -0.42 0.45 16 37 H 0.06 1.04 6.45 -51.93 -0.33 0.70 16 38 H 0.12 1.97 6.85 -52.49 -0.36 1.61 16 39 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 40 H 0.39 3.48 6.47 -40.82 -0.26 3.21 16 41 H 0.39 3.25 8.83 -40.82 -0.36 2.89 16 LS Contribution 333.88 15.07 5.03 5.03 Total: -1.00 -27.96 333.88 -10.24 -38.20 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -5.71 Total: 11.92 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: -5.43 Total: -40.18 kcal Atomic # 7 Polarization: -29.35 SS G_CDS: 0.90 Total: -28.45 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.96 -10.24 -38.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244305715.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.443 kcal (2) G-P(sol) polarization free energy of solvation -27.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.202 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds