Wall clock time and date at job start Tue Mar 31 2020 05:14:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47222 * 2 1 4 4 C 1.50700 * 109.47263 * 120.00204 * 2 1 3 5 5 C 1.37718 * 119.96568 * 295.05556 * 4 2 1 6 6 C 1.39725 * 119.92702 * 180.25503 * 5 4 2 7 7 C 1.47839 * 120.06476 * 179.76369 * 6 5 4 8 8 C 1.40023 * 119.88944 * 179.72242 * 7 6 5 9 9 C 1.36199 * 120.11571 * 180.02562 * 8 7 6 10 10 C 1.40962 * 119.88313 * 359.97438 * 9 8 7 11 11 C 1.40979 * 120.11009 * 179.97438 * 10 9 8 12 12 H 1.07995 * 119.99847 * 335.04722 * 11 10 9 13 13 C 1.39954 * 120.00056 * 154.78221 * 11 10 9 14 14 N 1.30837 * 119.99989 * 342.22555 * 13 11 10 15 15 Si 1.86803 * 120.00195 * 162.23444 * 13 11 10 16 16 H 1.48493 * 109.47192 * 59.99632 * 15 13 11 17 17 H 1.48498 * 109.47068 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.46822 * 299.99103 * 15 13 11 19 19 C 1.40962 * 119.77719 * 0.25220 * 10 9 8 20 20 C 1.36197 * 119.88619 * 359.53148 * 19 10 9 21 21 C 1.39765 * 119.87027 * 359.48498 * 6 5 4 22 22 C 1.37669 * 119.92840 * 0.25344 * 21 6 5 23 23 C 1.39158 * 119.96614 * 114.76949 * 4 2 1 24 24 N 1.39318 * 119.93175 * 0.02562 * 23 4 2 25 25 H 1.09003 * 109.47116 * 299.99616 * 1 2 3 26 26 H 1.08996 * 109.47501 * 59.99774 * 1 2 3 27 27 H 1.09002 * 109.47289 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46604 * 240.00311 * 2 1 3 29 29 H 1.08994 * 109.47117 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47067 * 300.00492 * 3 2 1 31 31 H 1.09003 * 109.46761 * 60.00167 * 3 2 1 32 32 H 1.07997 * 120.03376 * 0.02562 * 5 4 2 33 33 H 1.07995 * 119.94158 * 359.97438 * 8 7 6 34 34 H 1.07995 * 120.05909 * 179.97438 * 9 8 7 35 35 H 0.97004 * 119.99758 * 179.97438 * 14 13 11 36 36 H 1.08007 * 120.05623 * 179.75000 * 19 10 9 37 37 H 1.08004 * 119.94414 * 180.21092 * 20 19 10 38 38 H 1.07995 * 120.03588 * 180.27912 * 21 6 5 39 39 H 1.07998 * 119.96755 * 179.97438 * 22 21 6 40 40 H 0.96999 * 120.00007 * 186.84401 * 24 23 4 41 41 H 0.97000 * 119.99995 * 6.83998 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 1.7853 -0.1830 2.4784 6 6 2.2561 -0.8395 3.6184 7 6 1.9971 -0.2733 4.9592 8 6 2.4656 -0.9373 6.0995 9 6 2.2291 -0.4200 7.3370 10 6 1.5120 0.7863 7.4687 11 6 1.2641 1.3258 8.7474 12 1 1.2436 0.6787 9.6117 13 6 1.0500 2.7007 8.8974 14 7 1.4132 3.5265 7.9498 15 14 0.2459 3.3569 10.4506 16 1 1.0733 2.9921 11.6284 17 1 0.1340 4.8351 10.3635 18 1 -1.1086 2.7652 10.5945 19 6 1.0384 1.4484 6.3179 20 6 1.2839 0.9252 5.0846 21 6 2.9672 -2.0357 3.4889 22 6 3.2064 -2.5608 2.2389 23 6 2.7403 -1.9019 1.1048 24 7 2.9839 -2.4358 -0.1588 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4424 0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9562 0.8900 32 1 1.2315 0.7391 2.5755 33 1 3.0145 -1.8617 5.9975 34 1 2.5905 -0.9332 8.2159 35 1 1.2645 4.4795 8.0536 36 1 0.4849 2.3709 6.4138 37 1 0.9245 1.4335 4.2020 38 1 3.3284 -2.5478 4.3685 39 1 3.7562 -3.4849 2.1381 40 1 3.3887 -3.3131 -0.2448 41 1 2.7488 -1.9302 -0.9525 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244320317.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:35 Heat of formation + Delta-G solvation = 22.928880 kcal Electronic energy + Delta-G solvation = -20887.899169 eV Core-core repulsion = 17923.961061 eV Total energy + Delta-G solvation = -2963.938108 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.48036 -37.53240 -35.16620 -34.44393 -33.36634 -30.43014 -29.80782 -29.02079 -27.56360 -27.03175 -24.73333 -23.42876 -21.85422 -20.96727 -19.99389 -19.02182 -17.50406 -16.93096 -16.61348 -15.48245 -15.13917 -14.38117 -14.21335 -13.75315 -13.66502 -13.50210 -13.15185 -12.94284 -12.68669 -12.44109 -12.19242 -12.07911 -12.04145 -11.60207 -11.43592 -11.24344 -11.08743 -11.04964 -10.84204 -10.65471 -10.35662 -10.23923 -9.99254 -9.66694 -9.29762 -9.14753 -8.27785 -7.76957 -7.54068 -6.87729 -6.53012 -4.33362 1.85426 1.95222 2.86450 3.02646 3.05515 3.14366 3.27890 3.86864 4.12875 4.33697 4.76902 4.88796 4.99036 5.33485 5.39313 5.53574 5.70571 5.73653 5.75696 5.82764 5.88555 5.95417 6.03564 6.09314 6.25921 6.26891 6.34129 6.35670 6.45848 6.65740 6.73499 6.91580 6.99341 7.03542 7.12950 7.26293 7.39745 7.45228 7.61098 7.81112 7.98577 7.99106 8.01517 8.17788 8.24428 8.57841 8.81212 8.93783 10.08440 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026192 B = 0.003812 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.761160 B = 7343.739676 C = 8157.070620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.043 4.043 3 C -0.144 4.144 4 C -0.145 4.145 5 C -0.089 4.089 6 C -0.030 4.030 7 C -0.188 4.188 8 C -0.071 4.071 9 C -0.229 4.229 10 C 0.116 3.884 11 C -0.454 4.454 12 H 0.079 0.921 13 C 0.075 3.925 14 N -0.784 5.784 15 Si 0.910 3.090 16 H -0.264 1.264 17 H -0.277 1.277 18 H -0.262 1.262 19 C -0.169 4.169 20 C -0.081 4.081 21 C -0.100 4.100 22 C -0.185 4.185 23 C 0.180 3.820 24 N -0.887 5.887 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.118 0.882 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.283 0.717 36 H 0.116 0.884 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.390 0.610 41 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.273 -5.163 -12.813 13.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.062 4.062 3 C -0.202 4.202 4 C -0.150 4.150 5 C -0.108 4.108 6 C -0.032 4.032 7 C -0.190 4.190 8 C -0.089 4.089 9 C -0.248 4.248 10 C 0.114 3.886 11 C -0.482 4.482 12 H 0.098 0.902 13 C -0.144 4.144 14 N -0.408 5.408 15 Si 0.734 3.266 16 H -0.189 1.189 17 H -0.202 1.202 18 H -0.187 1.187 19 C -0.189 4.189 20 C -0.100 4.100 21 C -0.119 4.119 22 C -0.208 4.208 23 C 0.078 3.922 24 N -0.430 5.430 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.136 0.864 33 H 0.109 0.891 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.134 0.866 37 H 0.108 0.892 38 H 0.135 0.865 39 H 0.127 0.873 40 H 0.217 0.783 41 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 0.278 -4.860 -12.806 13.700 hybrid contribution -0.127 0.206 0.394 0.462 sum 0.151 -4.654 -12.413 13.257 Atomic orbital electron populations 1.21850 0.94770 1.01698 1.01657 1.19836 0.95551 0.95590 0.95177 1.21873 1.01102 0.95485 1.01718 1.19118 1.04479 0.96538 0.94817 1.20800 0.99806 0.99520 0.90634 1.18790 0.97399 0.94082 0.92908 1.18069 1.11478 0.99114 0.90306 1.20379 0.98462 0.97487 0.92622 1.20671 1.07574 1.01098 0.95504 1.17691 0.87253 0.90376 0.93321 1.19604 1.41599 0.92522 0.94509 0.90239 1.25974 0.93100 0.97137 0.98193 1.69834 1.33031 1.04672 1.33244 0.86338 0.80752 0.77875 0.81649 1.18898 1.20231 1.18682 1.20956 1.04488 1.01929 0.91483 1.20504 0.98280 0.94650 0.96554 1.20940 0.98930 0.95846 0.96147 1.20367 1.06878 1.01783 0.91730 1.17452 0.96085 0.93260 0.85425 1.42349 1.73592 1.22362 1.04712 0.92164 0.93039 0.92840 0.91845 0.92741 0.93024 0.92064 0.86407 0.89115 0.88949 0.90586 0.86620 0.89230 0.86502 0.87265 0.78253 0.77969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.05 37.16 0.34 -1.32 16 2 C -0.04 -0.52 3.04 -91.77 -0.28 -0.80 16 3 C -0.14 -1.72 8.95 37.16 0.33 -1.39 16 4 C -0.15 -2.23 4.80 -104.47 -0.50 -2.73 16 5 C -0.09 -1.59 8.11 -39.22 -0.32 -1.91 16 6 C -0.03 -0.60 5.88 -104.84 -0.62 -1.21 16 7 C -0.19 -4.29 5.90 -104.63 -0.62 -4.90 16 8 C -0.07 -1.63 9.36 -39.65 -0.37 -2.00 16 9 C -0.23 -5.63 9.73 -39.28 -0.38 -6.01 16 10 C 0.12 3.08 5.56 -106.80 -0.59 2.49 16 11 C -0.45 -11.85 9.02 -37.90 -0.34 -12.19 16 12 H 0.08 1.98 7.91 -52.49 -0.42 1.57 16 13 C 0.08 1.85 5.12 -17.33 -0.09 1.76 16 14 N -0.78 -19.89 11.00 55.55 0.61 -19.28 16 15 Si 0.91 18.23 29.60 -169.99 -5.03 13.20 16 16 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 17 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 18 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 19 C -0.17 -4.38 8.62 -39.28 -0.34 -4.72 16 20 C -0.08 -1.92 9.36 -39.65 -0.37 -2.30 16 21 C -0.10 -1.78 9.42 -39.22 -0.37 -2.15 16 22 C -0.19 -2.87 9.88 -39.43 -0.39 -3.26 16 23 C 0.18 2.63 6.74 -83.76 -0.56 2.07 16 24 N -0.89 -9.57 8.98 32.45 0.29 -9.28 16 25 H 0.06 0.76 7.68 -51.93 -0.40 0.36 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.67 5.67 -51.93 -0.29 0.38 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.79 7.12 -51.93 -0.37 0.42 16 32 H 0.12 2.08 5.20 -52.49 -0.27 1.80 16 33 H 0.09 1.82 6.17 -52.49 -0.32 1.49 16 34 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 35 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 36 H 0.12 3.06 6.21 -52.48 -0.33 2.73 16 37 H 0.09 1.91 6.17 -52.48 -0.32 1.59 16 38 H 0.12 1.97 6.17 -52.49 -0.32 1.65 16 39 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 40 H 0.39 3.42 8.84 -40.82 -0.36 3.06 16 41 H 0.39 3.62 6.46 -40.82 -0.26 3.35 16 LS Contribution 330.02 15.07 4.97 4.97 Total: -1.00 -27.72 330.02 -9.97 -37.69 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -5.34 Total: 13.26 kcal Atomic # 6 Polarization: -35.10 SS G_CDS: -5.47 Total: -40.57 kcal Atomic # 7 Polarization: -29.46 SS G_CDS: 0.90 Total: -28.56 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.72 -9.97 -37.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244320317.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.623 kcal (2) G-P(sol) polarization free energy of solvation -27.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds