Wall clock time and date at job start Tue Mar 31 2020 05:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47228 * 2 1 4 4 C 1.50703 * 109.46753 * 119.99617 * 2 1 3 5 5 C 1.37876 * 119.98097 * 304.88889 * 4 2 1 6 6 C 1.39376 * 119.95342 * 179.97438 * 5 4 2 7 7 C 1.48367 * 120.04322 * 179.97438 * 6 5 4 8 8 C 1.39754 * 119.99797 * 359.73370 * 7 6 5 9 9 C 1.38387 * 120.36934 * 179.76217 * 8 7 6 10 10 C 1.37722 * 120.38617 * 0.50566 * 9 8 7 11 11 C 1.40766 * 119.99105 * 359.75340 * 10 9 8 12 12 C 1.41422 * 120.18488 * 180.02562 * 11 10 9 13 13 H 1.08005 * 119.99728 * 205.43821 * 12 11 10 14 14 C 1.39923 * 120.00042 * 25.44463 * 12 11 10 15 15 N 1.30835 * 120.00363 * 14.97385 * 14 12 11 16 16 Si 1.86807 * 119.99924 * 194.97805 * 14 12 11 17 17 H 1.48491 * 109.47027 * 89.99704 * 16 14 12 18 18 H 1.48500 * 109.46688 * 209.99826 * 16 14 12 19 19 H 1.48497 * 109.46790 * 329.99553 * 16 14 12 20 20 C 1.38747 * 119.99944 * 180.02562 * 7 6 5 21 21 C 1.39416 * 119.91419 * 0.26309 * 6 5 4 22 22 C 1.37846 * 119.94800 * 359.50367 * 21 6 5 23 23 C 1.39006 * 119.97324 * 124.91003 * 4 2 1 24 24 N 1.39557 * 119.95619 * 359.97438 * 23 4 2 25 25 H 1.09004 * 109.47280 * 300.00229 * 1 2 3 26 26 H 1.09005 * 109.47009 * 60.00018 * 1 2 3 27 27 H 1.08995 * 109.47586 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47260 * 239.99685 * 2 1 3 29 29 H 1.09000 * 109.46895 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47111 * 299.99920 * 3 2 1 31 31 H 1.09005 * 109.47677 * 59.99862 * 3 2 1 32 32 H 1.08003 * 120.02169 * 359.97438 * 5 4 2 33 33 H 1.07994 * 119.81987 * 359.97438 * 8 7 6 34 34 H 1.08004 * 119.80695 * 180.23394 * 9 8 7 35 35 H 1.07997 * 120.00855 * 179.71875 * 10 9 8 36 36 H 0.96999 * 120.00262 * 180.02562 * 15 14 12 37 37 H 1.08000 * 120.19564 * 0.02562 * 20 7 6 38 38 H 1.07990 * 120.02843 * 179.74505 * 21 6 5 39 39 H 1.08000 * 119.97191 * 180.21774 * 22 21 6 40 40 H 0.97000 * 119.99874 * 352.36957 * 24 23 4 41 41 H 0.96999 * 120.00235 * 172.37085 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2306 5 6 1.6178 -0.3005 2.4801 6 6 2.0823 -0.9582 3.6177 7 6 1.6380 -0.5185 4.9633 8 6 0.7577 0.5593 5.0909 9 6 0.3345 0.9728 6.3419 10 6 0.7841 0.3335 7.4759 11 6 1.6754 -0.7505 7.3660 12 6 2.1393 -1.4103 8.5276 13 1 3.0849 -1.9319 8.5112 14 6 1.3731 -1.3874 9.6983 15 7 0.1178 -1.0216 9.6516 16 14 2.1426 -1.8791 11.3279 17 1 2.7256 -0.6802 11.9818 18 1 1.1020 -2.4669 12.2092 19 1 3.2118 -2.8813 11.0880 20 6 2.1014 -1.1736 6.0952 21 6 2.9695 -2.0260 3.4900 22 6 3.3776 -2.4357 2.2387 23 6 2.9134 -1.7781 1.1050 24 7 3.3316 -2.1914 -0.1606 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 3.1300 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 0.9338 0.5296 2.5772 33 1 0.4029 1.0704 4.2081 34 1 -0.3489 1.8045 6.4297 35 1 0.4535 0.6642 8.4494 36 1 -0.4132 -1.0054 10.4632 37 1 2.7858 -2.0037 6.0005 38 1 3.3337 -2.5343 4.3704 39 1 4.0622 -3.2651 2.1391 40 1 2.9253 -1.8095 -0.9543 41 1 4.0286 -2.8606 -0.2466 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244323306.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:36 Heat of formation + Delta-G solvation = 10.030836 kcal Electronic energy + Delta-G solvation = -20900.728060 eV Core-core repulsion = 17936.230650 eV Total energy + Delta-G solvation = -2964.497409 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.86513 -39.19271 -36.42943 -35.75441 -34.99256 -31.93092 -31.67084 -30.62342 -28.12021 -27.93245 -27.15335 -24.63048 -23.65195 -22.39770 -21.72410 -20.40491 -18.99831 -18.19689 -17.82206 -17.17249 -16.40448 -16.23162 -15.45437 -15.17288 -15.01021 -14.67697 -14.59440 -14.52190 -14.32059 -14.02937 -13.68073 -13.37131 -13.11075 -12.95199 -12.92421 -12.80337 -12.64147 -12.39995 -12.11908 -11.99274 -11.67703 -11.55303 -11.48350 -11.30689 -11.06933 -10.99102 -9.62718 -9.41316 -9.33381 -8.59786 -7.92022 -6.34382 0.28483 0.59188 1.01504 1.37687 1.43061 1.51536 1.61987 2.22195 2.72748 3.06920 3.12228 3.81345 3.83648 3.91042 4.08783 4.27543 4.37884 4.39949 4.49307 4.56374 4.62639 4.72622 4.85000 4.96520 5.03495 5.04228 5.04465 5.09670 5.15675 5.26326 5.31656 5.36690 5.40224 5.43415 5.50437 5.67272 5.77039 5.84693 6.04082 6.08039 6.11933 6.27318 6.44732 6.67583 6.72285 6.96978 7.05644 7.08133 8.37695 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.028016 B = 0.003808 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.191365 B = 7351.984556 C = 8101.584830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.040 4.040 3 C -0.142 4.142 4 C -0.159 4.159 5 C -0.065 4.065 6 C -0.109 4.109 7 C -0.023 4.023 8 C -0.229 4.229 9 C -0.109 4.109 10 C -0.191 4.191 11 C 0.079 3.921 12 C -0.503 4.503 13 H 0.073 0.927 14 C 0.034 3.966 15 N -0.831 5.831 16 Si 0.984 3.016 17 H -0.262 1.262 18 H -0.267 1.267 19 H -0.259 1.259 20 C -0.232 4.232 21 C -0.084 4.084 22 C -0.198 4.198 23 C 0.214 3.786 24 N -0.865 5.865 25 H 0.046 0.954 26 H 0.075 0.925 27 H 0.049 0.951 28 H 0.088 0.912 29 H 0.050 0.950 30 H 0.074 0.926 31 H 0.046 0.954 32 H 0.122 0.878 33 H 0.117 0.883 34 H 0.112 0.888 35 H 0.103 0.897 36 H 0.287 0.713 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.139 0.861 40 H 0.404 0.596 41 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.559 0.124 -18.203 18.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.058 4.058 3 C -0.199 4.199 4 C -0.164 4.164 5 C -0.084 4.084 6 C -0.111 4.111 7 C -0.023 4.023 8 C -0.248 4.248 9 C -0.128 4.128 10 C -0.210 4.210 11 C 0.077 3.923 12 C -0.533 4.533 13 H 0.091 0.909 14 C -0.180 4.180 15 N -0.458 5.458 16 Si 0.805 3.195 17 H -0.187 1.187 18 H -0.192 1.192 19 H -0.183 1.183 20 C -0.251 4.251 21 C -0.103 4.103 22 C -0.220 4.220 23 C 0.108 3.892 24 N -0.408 5.408 25 H 0.066 0.934 26 H 0.094 0.906 27 H 0.068 0.932 28 H 0.106 0.894 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.140 0.860 33 H 0.135 0.865 34 H 0.130 0.870 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.116 0.884 38 H 0.131 0.869 39 H 0.157 0.843 40 H 0.236 0.764 41 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 3.337 0.148 -18.060 18.366 hybrid contribution 0.183 -0.382 1.082 1.162 sum 3.519 -0.233 -16.978 17.340 Atomic orbital electron populations 1.21881 0.94317 1.01735 1.02272 1.19916 0.95909 0.95842 0.94168 1.21847 1.00839 0.95025 1.02200 1.19481 1.02904 0.98742 0.95236 1.20879 0.98154 0.98483 0.90853 1.18827 1.01195 0.98947 0.92122 1.18681 0.96515 0.95381 0.91735 1.20756 1.05599 1.01973 0.96488 1.20922 0.99471 0.99345 0.93019 1.21386 1.03890 0.98169 0.97570 1.17916 0.91011 0.90635 0.92738 1.19811 1.06046 1.31476 0.96005 0.90889 1.26745 0.94319 0.92780 1.04148 1.69883 1.07585 1.36912 1.31417 0.85182 0.78909 0.79365 0.76082 1.18661 1.19179 1.18288 1.21236 1.08308 1.03465 0.92092 1.21095 0.95993 0.95622 0.97575 1.20650 1.06781 1.03807 0.90809 1.17629 0.92923 0.91990 0.86653 1.42428 1.45687 1.49116 1.03576 0.93438 0.90620 0.93197 0.89372 0.93087 0.90668 0.93531 0.85997 0.86470 0.86975 0.87894 0.90286 0.88422 0.86876 0.84301 0.76360 0.76410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.95 71.98 0.64 -2.09 16 2 C -0.04 -0.77 3.04 -11.54 -0.04 -0.80 16 3 C -0.14 -2.62 9.05 71.98 0.65 -1.96 16 4 C -0.16 -4.24 4.80 -19.76 -0.09 -4.33 16 5 C -0.07 -2.17 8.11 22.46 0.18 -1.99 16 6 C -0.11 -4.33 5.88 -20.02 -0.12 -4.45 16 7 C -0.02 -1.09 5.87 -20.09 -0.12 -1.21 16 8 C -0.23 -10.55 9.43 22.67 0.21 -10.34 16 9 C -0.11 -5.35 10.01 22.18 0.22 -5.13 16 10 C -0.19 -10.60 8.68 22.77 0.20 -10.40 16 11 C 0.08 4.52 5.57 -21.32 -0.12 4.41 16 12 C -0.50 -28.52 9.06 23.46 0.21 -28.31 16 13 H 0.07 3.99 7.89 -2.91 -0.02 3.97 16 14 C 0.03 1.78 5.19 85.25 0.44 2.22 16 15 N -0.83 -45.29 10.85 21.82 0.24 -45.06 16 16 Si 0.98 39.72 29.59 68.60 2.03 41.75 16 17 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 18 H -0.27 -10.20 7.11 99.48 0.71 -9.49 16 19 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 20 C -0.23 -12.18 9.17 22.95 0.21 -11.97 16 21 C -0.08 -3.04 9.41 22.46 0.21 -2.82 16 22 C -0.20 -5.63 9.88 22.37 0.22 -5.41 16 23 C 0.21 5.33 6.74 38.29 0.26 5.59 16 24 N -0.87 -13.75 8.99 -51.31 -0.46 -14.21 16 25 H 0.05 1.02 7.13 -2.38 -0.02 1.01 16 26 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.09 1.29 5.67 -2.39 -0.01 1.27 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.05 0.99 7.68 -2.38 -0.02 0.97 16 32 H 0.12 3.93 5.21 -2.91 -0.02 3.92 16 33 H 0.12 4.63 6.17 -2.91 -0.02 4.61 16 34 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 35 H 0.10 5.94 6.11 -2.91 -0.02 5.92 16 36 H 0.29 14.08 8.30 -92.71 -0.77 13.31 16 37 H 0.10 4.89 6.18 -2.91 -0.02 4.88 16 38 H 0.11 4.21 6.19 -2.92 -0.02 4.19 16 39 H 0.14 3.17 8.06 -2.91 -0.02 3.14 16 40 H 0.40 4.88 6.47 -92.71 -0.60 4.28 16 41 H 0.41 4.81 8.85 -92.71 -0.82 3.99 16 Total: -1.00 -65.41 330.12 4.64 -60.78 By element: Atomic # 1 Polarization: 36.10 SS G_CDS: -0.35 Total: 35.75 kcal Atomic # 6 Polarization: -82.19 SS G_CDS: 3.18 Total: -79.01 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -0.22 Total: -59.27 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -65.41 4.64 -60.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244323306.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.807 kcal (2) G-P(sol) polarization free energy of solvation -65.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds