Wall clock time and date at job start Tue Mar 31 2020 05:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46920 * 2 1 4 4 C 1.50705 * 109.46818 * 120.00078 * 2 1 3 5 5 C 1.37703 * 119.96267 * 294.90250 * 4 2 1 6 6 C 1.39762 * 119.92443 * 179.97438 * 5 4 2 7 7 C 1.47728 * 120.07367 * 179.97438 * 6 5 4 8 8 C 1.39270 * 120.34137 * 309.99912 * 7 6 5 9 9 C 1.37998 * 119.97273 * 179.97438 * 8 7 6 10 10 C 1.38980 * 120.69309 * 0.02562 * 9 8 7 11 11 C 1.36396 * 120.69900 * 0.02562 * 10 9 8 12 12 C 1.40759 * 119.99669 * 359.67380 * 11 10 9 13 13 C 1.40827 * 120.34041 * 180.30250 * 12 11 10 14 14 H 1.08002 * 119.99911 * 152.50692 * 13 12 11 15 15 C 1.40024 * 120.00027 * 332.50825 * 13 12 11 16 16 N 1.30806 * 119.99871 * 346.78717 * 15 13 12 17 17 Si 1.86805 * 120.00321 * 166.79157 * 15 13 12 18 18 H 1.48505 * 109.46684 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47520 * 119.99902 * 17 15 13 20 20 H 1.48504 * 109.46926 * 240.00028 * 17 15 13 21 21 C 1.39813 * 119.85761 * 359.97438 * 6 5 4 22 22 C 1.37660 * 119.92679 * 359.97438 * 21 6 5 23 23 C 1.39155 * 119.96181 * 114.62966 * 4 2 1 24 24 N 1.39322 * 119.93073 * 0.02562 * 23 4 2 25 25 H 1.08996 * 109.47262 * 300.00064 * 1 2 3 26 26 H 1.09001 * 109.46993 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47092 * 60.00323 * 1 2 3 28 28 H 1.08996 * 109.47262 * 239.99936 * 2 1 3 29 29 H 1.08997 * 109.46684 * 59.99880 * 3 2 1 30 30 H 1.08996 * 109.46625 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47287 * 300.00142 * 3 2 1 32 32 H 1.08002 * 120.03582 * 359.97438 * 5 4 2 33 33 H 1.07994 * 120.01372 * 0.02562 * 8 7 6 34 34 H 1.08001 * 119.65263 * 179.97438 * 9 8 7 35 35 H 1.07998 * 119.64747 * 179.97438 * 10 9 8 36 36 H 1.08001 * 119.99945 * 179.97438 * 11 10 9 37 37 H 0.96996 * 119.99863 * 180.02562 * 16 15 13 38 38 H 1.07999 * 120.03742 * 179.97438 * 21 6 5 39 39 H 1.07998 * 119.96361 * 180.02562 * 22 21 6 40 40 H 0.96995 * 119.99825 * 7.07985 * 24 23 4 41 41 H 0.97004 * 120.00224 * 187.07597 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 1.7879 -0.1813 2.4781 6 6 2.2536 -0.8411 3.6188 7 6 1.9938 -0.2761 4.9587 8 6 2.2816 1.0599 5.2268 9 6 2.0354 1.5800 6.4811 10 6 1.5012 0.7835 7.4870 11 6 1.2097 -0.5287 7.2553 12 6 1.4433 -1.0877 5.9848 13 6 1.1392 -2.4400 5.7358 14 1 0.8884 -2.7618 4.7358 15 6 1.1618 -3.3673 6.7847 16 7 1.7078 -3.0468 7.9293 17 14 0.4124 -5.0622 6.5494 18 1 -0.1371 -5.1739 5.1743 19 1 1.4574 -6.0979 6.7510 20 1 -0.6793 -5.2620 7.5361 21 6 2.9660 -2.0371 3.4889 22 6 3.2060 -2.5613 2.2389 23 6 2.7376 -1.9034 1.1050 24 7 2.9788 -2.4388 -0.1585 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.2370 0.7426 2.5750 33 1 2.6966 1.6889 4.4532 34 1 2.2610 2.6166 6.6834 35 1 1.3156 1.2079 8.4626 36 1 0.7953 -1.1374 8.0453 37 1 1.7238 -3.6893 8.6558 38 1 3.3276 -2.5492 4.3684 39 1 3.7558 -3.4854 2.1379 40 1 2.7469 -1.9319 -0.9523 41 1 3.3785 -3.3184 -0.2443 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244332307.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:39 Heat of formation + Delta-G solvation = 23.512843 kcal Electronic energy + Delta-G solvation = -21563.676333 eV Core-core repulsion = 18599.763548 eV Total energy + Delta-G solvation = -2963.912786 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.30551 -37.45365 -34.90704 -34.03132 -33.63579 -30.28801 -29.68805 -28.96594 -26.96372 -26.79974 -25.10216 -23.12126 -21.82216 -20.77657 -20.05028 -18.87660 -17.26476 -16.79372 -16.37937 -15.50311 -14.92538 -14.20521 -14.14645 -13.67654 -13.51674 -13.47397 -13.10773 -12.92043 -12.69702 -12.50079 -12.16541 -11.92234 -11.59295 -11.49046 -11.37442 -11.09864 -11.02482 -10.96252 -10.72332 -10.41681 -10.31835 -10.07107 -9.98469 -9.39718 -9.29802 -9.20303 -8.04038 -7.54054 -7.32694 -6.79158 -6.50185 -4.30415 2.17590 2.19559 2.81722 3.08462 3.15028 3.15084 3.25315 3.95015 4.26430 4.60309 4.69095 5.00370 5.09955 5.42063 5.58361 5.66713 5.76365 5.77277 5.94772 5.99099 6.01146 6.09177 6.18887 6.26127 6.31570 6.42270 6.43787 6.47537 6.57130 6.72142 6.87500 7.00492 7.10523 7.21505 7.27693 7.38631 7.57360 7.65303 7.66387 7.93718 8.04547 8.12553 8.14038 8.16681 8.32663 8.66728 8.91374 9.00577 10.20478 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014832 B = 0.006327 C = 0.004941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.409516 B = 4424.612194 C = 5665.884904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.041 4.041 3 C -0.143 4.143 4 C -0.161 4.161 5 C -0.077 4.077 6 C -0.034 4.034 7 C -0.170 4.170 8 C -0.079 4.079 9 C -0.241 4.241 10 C -0.107 4.107 11 C -0.157 4.157 12 C 0.125 3.875 13 C -0.449 4.449 14 H 0.083 0.917 15 C 0.075 3.925 16 N -0.796 5.796 17 Si 0.903 3.097 18 H -0.260 1.260 19 H -0.275 1.275 20 H -0.273 1.273 21 C -0.052 4.052 22 C -0.199 4.199 23 C 0.191 3.809 24 N -0.888 5.888 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.119 0.881 37 H 0.279 0.721 38 H 0.127 0.873 39 H 0.109 0.891 40 H 0.390 0.610 41 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.480 1.430 -11.922 12.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.059 4.059 3 C -0.200 4.200 4 C -0.166 4.166 5 C -0.096 4.096 6 C -0.035 4.035 7 C -0.171 4.171 8 C -0.097 4.097 9 C -0.261 4.261 10 C -0.125 4.125 11 C -0.176 4.176 12 C 0.123 3.877 13 C -0.478 4.478 14 H 0.101 0.899 15 C -0.143 4.143 16 N -0.422 5.422 17 Si 0.728 3.272 18 H -0.183 1.183 19 H -0.200 1.200 20 H -0.198 1.198 21 C -0.070 4.070 22 C -0.222 4.222 23 C 0.090 3.910 24 N -0.430 5.430 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.130 0.870 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.136 0.864 37 H 0.090 0.910 38 H 0.145 0.855 39 H 0.127 0.873 40 H 0.219 0.781 41 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 0.521 1.344 -11.632 11.721 hybrid contribution -0.178 -1.016 -0.195 1.050 sum 0.342 0.328 -11.828 11.837 Atomic orbital electron populations 1.21847 0.94930 1.01740 1.01413 1.19796 0.95433 0.95391 0.95307 1.21863 1.00979 0.95711 1.01475 1.19018 1.05865 0.96996 0.94679 1.20830 0.98823 0.99160 0.90785 1.18581 0.98028 0.94667 0.92258 1.18637 1.10623 0.94160 0.93689 1.20573 0.99511 0.94054 0.95560 1.20269 1.12775 0.98211 0.94799 1.20465 1.00274 0.94909 0.96872 1.21074 1.04347 0.93524 0.98656 1.17578 0.87401 0.92430 0.90309 1.19568 1.40205 0.92418 0.95630 0.89943 1.25912 0.93031 1.00858 0.94456 1.69810 1.32459 1.36308 1.03608 0.86330 0.79571 0.81511 0.79832 1.18315 1.19994 1.19801 1.21174 0.95158 0.94620 0.96089 1.20449 1.07803 1.02097 0.91819 1.17501 0.95259 0.92945 0.85344 1.42372 1.73888 1.22017 1.04745 0.92225 0.92806 0.93265 0.91975 0.92216 0.92836 0.93211 0.87037 0.89393 0.89657 0.89689 0.86360 0.91003 0.85539 0.87333 0.78090 0.78251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.05 37.16 0.34 -1.45 16 2 C -0.04 -0.53 3.04 -91.77 -0.28 -0.81 16 3 C -0.14 -1.72 8.95 37.16 0.33 -1.39 16 4 C -0.16 -2.65 4.80 -104.47 -0.50 -3.15 16 5 C -0.08 -1.47 8.21 -39.21 -0.32 -1.79 16 6 C -0.03 -0.73 4.93 -104.86 -0.52 -1.25 16 7 C -0.17 -4.10 5.52 -104.22 -0.58 -4.67 16 8 C -0.08 -1.79 9.51 -39.29 -0.37 -2.17 16 9 C -0.24 -5.46 10.03 -39.39 -0.40 -5.86 16 10 C -0.11 -2.53 9.96 -39.97 -0.40 -2.92 16 11 C -0.16 -4.06 8.61 -39.29 -0.34 -4.39 16 12 C 0.13 3.28 5.55 -106.55 -0.59 2.69 16 13 C -0.45 -11.57 7.10 -37.93 -0.27 -11.84 16 14 H 0.08 2.13 6.69 -52.49 -0.35 1.78 16 15 C 0.07 1.84 5.21 -17.32 -0.09 1.75 16 16 N -0.80 -20.25 10.88 55.55 0.60 -19.65 16 17 Si 0.90 18.72 29.58 -169.99 -5.03 13.69 16 18 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 19 H -0.27 -5.60 7.11 56.52 0.40 -5.19 16 20 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 21 C -0.05 -1.08 8.02 -39.20 -0.31 -1.40 16 22 C -0.20 -3.57 9.88 -39.43 -0.39 -3.96 16 23 C 0.19 3.11 6.74 -83.76 -0.56 2.55 16 24 N -0.89 -10.80 8.98 32.45 0.29 -10.51 16 25 H 0.06 0.80 7.70 -51.93 -0.40 0.40 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.71 5.67 -51.93 -0.29 0.42 16 29 H 0.06 0.76 7.11 -51.93 -0.37 0.39 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.11 2.04 7.07 -52.49 -0.37 1.67 16 33 H 0.09 1.81 8.04 -52.49 -0.42 1.38 16 34 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 35 H 0.08 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.12 3.15 6.21 -52.49 -0.33 2.82 16 37 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 38 H 0.13 2.83 7.33 -52.49 -0.38 2.45 16 39 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.39 4.04 6.46 -40.82 -0.26 3.78 16 41 H 0.39 4.03 8.84 -40.82 -0.36 3.67 16 LS Contribution 332.01 15.07 5.00 5.00 Total: -1.00 -27.34 332.01 -10.02 -37.35 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: -5.64 Total: 14.17 kcal Atomic # 6 Polarization: -34.82 SS G_CDS: -5.25 Total: -40.07 kcal Atomic # 7 Polarization: -31.05 SS G_CDS: 0.90 Total: -30.16 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.34 -10.02 -37.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244332307.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.868 kcal (2) G-P(sol) polarization free energy of solvation -27.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds