Wall clock time and date at job start Tue Mar 31 2020 05:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47063 * 2 1 4 4 N 1.46903 * 109.46607 * 240.00516 * 2 1 3 5 5 C 1.50692 * 109.47764 * 120.00547 * 2 1 3 6 6 C 1.38386 * 119.85965 * 149.99845 * 5 2 1 7 7 C 1.37935 * 120.14693 * 180.02562 * 6 5 2 8 8 C 1.39603 * 119.85625 * 359.97221 * 7 6 5 9 9 C 1.47981 * 120.14676 * 180.02562 * 8 7 6 10 10 C 1.39943 * 119.87879 * 359.73218 * 9 8 7 11 11 C 1.36262 * 120.12004 * 179.75974 * 10 9 8 12 12 C 1.40936 * 119.87285 * 0.51094 * 11 10 9 13 13 C 1.41023 * 120.11202 * 179.72267 * 12 11 10 14 14 H 1.08009 * 119.99850 * 204.69487 * 13 12 11 15 15 C 1.40016 * 120.00639 * 24.69064 * 13 12 11 16 16 N 1.30795 * 119.99316 * 17.94348 * 15 13 12 17 17 Si 1.86798 * 120.00142 * 197.94263 * 15 13 12 18 18 H 1.48496 * 109.47126 * 60.00007 * 17 15 13 19 19 H 1.48496 * 109.46905 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47072 * 299.99992 * 17 15 13 21 21 C 1.40927 * 119.76666 * 359.73870 * 12 11 10 22 22 C 1.36255 * 119.87917 * 0.02562 * 21 12 11 23 23 C 1.39603 * 119.70868 * 0.27778 * 8 7 6 24 24 C 1.37940 * 119.85137 * 359.49583 * 23 8 7 25 25 H 1.09005 * 109.46456 * 299.99708 * 1 2 3 26 26 H 1.08990 * 109.47457 * 59.99101 * 1 2 3 27 27 H 1.09002 * 109.47013 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46993 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47297 * 300.00733 * 3 2 1 30 30 H 1.08999 * 109.46877 * 60.00559 * 3 2 1 31 31 H 1.00899 * 111.00386 * 299.99448 * 4 2 1 32 32 H 1.00900 * 111.00182 * 63.95504 * 4 2 1 33 33 H 1.08003 * 119.92683 * 359.97438 * 6 5 2 34 34 H 1.08005 * 120.07170 * 179.97438 * 7 6 5 35 35 H 1.08000 * 119.93964 * 359.97438 * 10 9 8 36 36 H 1.07992 * 120.06046 * 180.24989 * 11 10 9 37 37 H 0.97000 * 119.99013 * 180.02562 * 16 15 13 38 38 H 1.07997 * 120.06164 * 179.97438 * 21 12 11 39 39 H 1.08003 * 119.93944 * 179.97438 * 22 21 12 40 40 H 1.08000 * 120.07346 * 179.70028 * 23 8 7 41 41 H 1.08002 * 119.92517 * 180.20797 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0195 -0.6924 -1.1996 5 6 2.0325 -0.7105 1.2303 6 6 3.2421 -1.3817 1.1926 7 6 3.7074 -2.0344 2.3151 8 6 2.9555 -2.0165 3.4912 9 6 3.4489 -2.7141 4.6994 10 6 4.6693 -3.3978 4.6601 11 6 5.1306 -4.0377 5.7712 12 6 4.3710 -4.0193 6.9581 13 6 4.8408 -4.6848 8.1092 14 1 4.1426 -5.0197 8.8622 15 6 6.2124 -4.9116 8.2761 16 7 7.0785 -4.2248 7.5769 17 14 6.8051 -6.1950 9.4971 18 1 6.2650 -7.5254 9.1183 19 1 8.2893 -6.2411 9.4854 20 1 6.3322 -5.8383 10.8588 21 6 3.1401 -3.3337 6.9905 22 6 2.6905 -2.6930 5.8752 23 6 1.7336 -1.3419 3.5210 24 6 1.2820 -0.6892 2.3928 25 1 -0.3632 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6961 -1.6479 -1.2229 32 1 1.7501 -0.1988 -2.0373 33 1 3.8226 -1.3951 0.2820 34 1 4.6514 -2.5582 2.2842 35 1 5.2482 -3.4153 3.7486 36 1 6.0745 -4.5616 5.7409 37 1 8.0286 -4.3822 7.6923 38 1 2.5540 -3.3168 7.8974 39 1 1.7472 -2.1676 5.8988 40 1 1.1448 -1.3284 4.4263 41 1 0.3384 -0.1642 2.4155 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245906271.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:14 Heat of formation + Delta-G solvation = 14.974123 kcal Electronic energy + Delta-G solvation = -20603.272070 eV Core-core repulsion = 17638.989018 eV Total energy + Delta-G solvation = -2964.283052 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.73377 -39.38621 -37.39369 -35.58674 -32.76008 -32.19960 -31.26672 -30.38061 -29.64420 -28.13439 -26.89639 -24.04509 -23.91792 -21.93312 -21.86114 -20.36851 -19.31769 -18.00226 -17.16920 -16.76937 -16.33121 -16.04013 -15.57634 -15.19662 -15.01723 -14.65249 -14.55567 -14.42910 -14.03633 -13.86768 -13.68767 -13.61313 -13.16564 -13.06819 -12.84643 -12.76071 -12.66101 -12.46474 -12.20582 -12.12668 -11.88113 -11.62523 -11.42147 -11.14667 -11.06539 -10.05585 -9.71185 -9.54979 -9.49960 -8.79727 -8.60720 -6.33697 0.14343 0.66267 1.14208 1.20591 1.37207 1.49293 1.59897 2.17076 2.63265 3.12495 3.60026 3.77498 3.77738 4.04969 4.17274 4.23008 4.25452 4.29982 4.40880 4.53548 4.66521 4.71758 4.77832 4.91906 4.94504 4.97788 4.99272 5.08825 5.20895 5.26923 5.28583 5.33674 5.37106 5.39373 5.59274 5.65122 5.77052 5.78683 5.99489 6.05299 6.27902 6.29534 6.30741 6.37291 6.61705 6.70473 6.84364 6.97346 8.23505 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.045489 B = 0.003096 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.385768 B = 9042.964650 C = 9403.353746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.161 3.839 3 C -0.133 4.133 4 N -0.842 5.842 5 C -0.107 4.107 6 C -0.088 4.088 7 C -0.156 4.156 8 C -0.013 4.013 9 C -0.200 4.200 10 C -0.087 4.087 11 C -0.194 4.194 12 C 0.086 3.914 13 C -0.488 4.488 14 H 0.082 0.918 15 C 0.034 3.966 16 N -0.815 5.815 17 Si 0.986 3.014 18 H -0.259 1.259 19 H -0.266 1.266 20 H -0.257 1.257 21 C -0.246 4.246 22 C -0.071 4.071 23 C -0.150 4.150 24 C -0.107 4.107 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.344 0.656 32 H 0.351 0.649 33 H 0.135 0.865 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.292 0.708 38 H 0.102 0.898 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.996 6.709 -13.134 17.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.068 3.932 3 C -0.191 4.191 4 N -0.373 5.373 5 C -0.107 4.107 6 C -0.106 4.106 7 C -0.175 4.175 8 C -0.013 4.013 9 C -0.201 4.201 10 C -0.105 4.105 11 C -0.213 4.213 12 C 0.084 3.916 13 C -0.517 4.517 14 H 0.100 0.900 15 C -0.183 4.183 16 N -0.439 5.439 17 Si 0.806 3.194 18 H -0.184 1.184 19 H -0.190 1.190 20 H -0.181 1.181 21 C -0.265 4.265 22 C -0.089 4.089 23 C -0.168 4.168 24 C -0.125 4.125 25 H 0.086 0.914 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.158 0.842 32 H 0.166 0.834 33 H 0.153 0.847 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.121 0.879 37 H 0.103 0.897 38 H 0.121 0.879 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.000 6.909 -12.884 16.666 hybrid contribution -0.304 -0.776 0.643 1.053 sum -8.304 6.133 -12.241 16.013 Atomic orbital electron populations 1.22637 0.95436 1.02206 1.03188 1.19514 0.92505 0.93472 0.87717 1.21809 1.01246 0.93658 1.02403 1.58807 1.67760 1.06776 1.04003 1.19905 0.95268 1.00225 0.95310 1.21005 0.96098 0.96094 0.97420 1.21343 1.00401 1.02447 0.93261 1.19014 0.94384 0.95373 0.92525 1.18487 0.97936 1.09295 0.94345 1.20769 0.95288 0.97140 0.97281 1.20975 1.01732 1.05710 0.92915 1.18064 0.91603 0.88945 0.93032 1.19914 0.93354 1.33272 1.05118 0.90032 1.26892 0.96392 0.96724 0.98262 1.69866 1.04224 1.33433 1.36395 0.85185 0.77706 0.78227 0.78247 1.18365 1.19014 1.18089 1.20900 1.00382 1.06664 0.98572 1.20700 0.98230 0.97645 0.92285 1.21303 0.96097 1.00038 0.99378 1.21152 1.00161 0.99113 0.92037 0.91418 0.90947 0.92829 0.93181 0.90826 0.92122 0.84240 0.83436 0.84671 0.87001 0.87545 0.87909 0.89728 0.87937 0.86151 0.85902 0.84067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.63 8.06 71.98 0.58 -2.05 16 2 C 0.16 2.99 1.06 2.78 0.00 3.00 16 3 C -0.13 -2.35 8.72 71.98 0.63 -1.72 16 4 N -0.84 -13.91 7.75 -154.52 -1.20 -15.11 16 5 C -0.11 -2.78 4.80 -19.80 -0.10 -2.87 16 6 C -0.09 -2.64 9.30 22.23 0.21 -2.43 16 7 C -0.16 -5.63 9.43 22.53 0.21 -5.41 16 8 C -0.01 -0.51 5.88 -20.04 -0.12 -0.62 16 9 C -0.20 -9.19 5.90 -19.87 -0.12 -9.31 16 10 C -0.09 -4.25 9.36 22.22 0.21 -4.04 16 11 C -0.19 -10.52 8.63 22.47 0.19 -10.32 16 12 C 0.09 4.74 5.57 -21.28 -0.12 4.62 16 13 C -0.49 -26.33 9.03 23.38 0.21 -26.12 16 14 H 0.08 4.19 7.91 -2.91 -0.02 4.16 16 15 C 0.03 1.70 5.13 85.28 0.44 2.13 16 16 N -0.81 -42.53 10.96 21.84 0.24 -42.29 16 17 Si 0.99 37.56 29.60 68.60 2.03 39.59 16 18 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 19 H -0.27 -9.54 7.11 99.48 0.71 -8.83 16 20 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 21 C -0.25 -12.34 9.73 22.47 0.22 -12.13 16 22 C -0.07 -3.23 9.36 22.22 0.21 -3.02 16 23 C -0.15 -5.03 9.43 22.53 0.21 -4.82 16 24 C -0.11 -2.90 9.12 22.24 0.20 -2.70 16 25 H 0.07 0.99 6.50 -2.38 -0.02 0.97 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.34 5.59 8.99 -89.69 -0.81 4.78 16 32 H 0.35 4.22 8.98 -89.69 -0.81 3.41 16 33 H 0.14 3.71 7.39 -2.91 -0.02 3.69 16 34 H 0.11 4.04 6.18 -2.91 -0.02 4.02 16 35 H 0.11 4.74 6.18 -2.91 -0.02 4.72 16 36 H 0.10 5.76 6.16 -2.91 -0.02 5.74 16 37 H 0.29 13.70 8.29 -92.71 -0.77 12.93 16 38 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 39 H 0.12 4.67 6.18 -2.91 -0.02 4.66 16 40 H 0.12 3.87 6.18 -2.91 -0.02 3.85 16 41 H 0.14 3.00 6.15 -2.91 -0.02 2.99 16 Total: -1.00 -60.37 331.99 3.60 -56.78 By element: Atomic # 1 Polarization: 39.40 SS G_CDS: -0.55 Total: 38.85 kcal Atomic # 6 Polarization: -80.89 SS G_CDS: 3.07 Total: -77.82 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: -0.96 Total: -57.40 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal Total: -60.37 3.60 -56.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245906271.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.751 kcal (2) G-P(sol) polarization free energy of solvation -60.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.777 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds