Wall clock time and date at job start Tue Mar 31 2020 05:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53005 * 109.46961 * 2 1 4 4 N 1.46897 * 109.47410 * 239.99837 * 2 1 3 5 5 C 1.50698 * 109.46693 * 119.99406 * 2 1 3 6 6 C 1.38320 * 119.87541 * 150.00146 * 5 2 1 7 7 C 1.38022 * 120.12163 * 180.02562 * 6 5 2 8 8 C 1.39334 * 119.87588 * 359.97438 * 7 6 5 9 9 C 1.48413 * 120.11386 * 179.97438 * 8 7 6 10 10 C 1.39718 * 120.00630 * 359.97438 * 9 8 7 11 11 C 1.38392 * 120.38101 * 179.74753 * 10 9 8 12 12 C 1.37719 * 120.37783 * 0.23194 * 11 10 9 13 13 C 1.40753 * 119.99149 * 0.02562 * 12 11 10 14 14 C 1.41413 * 120.18756 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00398 * 204.50817 * 14 13 12 16 16 C 1.39937 * 120.00066 * 24.50969 * 14 13 12 17 17 N 1.30829 * 119.99941 * 17.89255 * 16 14 13 18 18 Si 1.86800 * 120.00252 * 197.89204 * 16 14 13 19 19 H 1.48493 * 109.47230 * 89.99703 * 18 16 14 20 20 H 1.48504 * 109.47286 * 210.00148 * 18 16 14 21 21 H 1.48504 * 109.46986 * 329.99712 * 18 16 14 22 22 C 1.38735 * 119.99470 * 180.25822 * 9 8 7 23 23 C 1.39328 * 119.76054 * 0.25380 * 8 7 6 24 24 C 1.38016 * 119.87506 * 359.51307 * 23 8 7 25 25 H 1.08996 * 109.47260 * 300.00654 * 1 2 3 26 26 H 1.08996 * 109.46746 * 60.00186 * 1 2 3 27 27 H 1.09003 * 109.47019 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.46987 * 179.97438 * 3 2 1 29 29 H 1.08996 * 109.46723 * 299.99403 * 3 2 1 30 30 H 1.08997 * 109.46934 * 59.99505 * 3 2 1 31 31 H 1.00902 * 110.99777 * 296.04679 * 4 2 1 32 32 H 1.00899 * 111.00152 * 59.99918 * 4 2 1 33 33 H 1.08000 * 119.94124 * 0.02562 * 6 5 2 34 34 H 1.08002 * 120.06510 * 180.02562 * 7 6 5 35 35 H 1.08007 * 119.80703 * 0.02896 * 10 9 8 36 36 H 1.07998 * 119.81052 * 180.26110 * 11 10 9 37 37 H 1.08002 * 120.00353 * 179.97438 * 12 11 10 38 38 H 0.97005 * 120.00221 * 180.02562 * 17 16 14 39 39 H 1.07999 * 120.19052 * 359.97438 * 22 9 8 40 40 H 1.07999 * 120.05842 * 179.74283 * 23 8 7 41 41 H 1.07999 * 119.93644 * 180.22505 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 2.0198 -0.6925 -1.1994 5 6 2.0323 -0.7103 1.2305 6 6 3.2413 -1.3813 1.1936 7 6 3.7058 -2.0340 2.3175 8 6 2.9548 -2.0156 3.4909 9 6 3.4490 -2.7162 4.7024 10 6 4.6691 -3.3961 4.6674 11 6 5.1398 -4.0476 5.7941 12 6 4.4087 -4.0371 6.9611 13 6 3.1750 -3.3615 7.0124 14 6 2.4206 -3.3485 8.2085 15 1 1.3516 -3.1995 8.1711 16 6 3.0593 -3.5285 9.4405 17 7 4.3531 -3.3603 9.5374 18 14 2.0645 -4.0090 10.9468 19 1 1.9993 -5.4892 11.0454 20 1 2.7135 -3.4599 12.1645 21 1 0.6899 -3.4597 10.8282 22 6 2.6967 -2.7008 5.8679 23 6 1.7355 -1.3422 3.5212 24 6 1.2828 -0.6888 2.3929 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4426 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.7504 -1.6648 -1.1908 32 1 1.6963 -0.2350 -2.0385 33 1 3.8228 -1.3946 0.2836 34 1 4.6501 -2.5574 2.2877 35 1 5.2503 -3.4096 3.7572 36 1 6.0861 -4.5668 5.7579 37 1 4.7816 -4.5478 7.8366 38 1 4.7959 -3.4855 10.3914 39 1 1.7512 -2.1796 5.8972 40 1 1.1474 -1.3283 4.4269 41 1 0.3395 -0.1634 2.4163 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245914184.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:17 Heat of formation + Delta-G solvation = 28.956008 kcal Electronic energy + Delta-G solvation = -20682.168007 eV Core-core repulsion = 17718.491254 eV Total energy + Delta-G solvation = -2963.676752 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.59562 -37.72080 -36.18177 -33.70245 -31.24134 -30.93575 -29.86589 -29.27150 -27.50566 -27.39026 -25.31104 -23.06828 -22.29545 -20.47296 -20.10562 -19.29631 -17.47017 -16.57894 -15.59413 -15.26216 -15.04615 -14.95388 -14.35768 -14.03259 -13.63218 -13.33389 -13.18502 -13.08050 -12.77729 -12.55252 -12.37227 -12.20183 -11.98417 -11.64947 -11.58781 -11.39564 -11.17546 -11.11846 -10.85453 -10.54875 -10.46051 -10.31504 -9.68807 -9.37033 -9.22059 -8.86271 -8.60384 -8.49379 -7.51007 -6.93610 -6.76512 -4.38019 1.49178 1.86690 2.78502 3.05662 3.07895 3.09998 3.22759 3.92356 4.26080 4.35685 4.64053 4.69611 4.94896 5.05083 5.30042 5.42229 5.45720 5.54582 5.61238 5.70066 5.70848 5.72818 5.87751 5.95377 6.06065 6.16502 6.23681 6.29995 6.50646 6.54438 6.78737 6.80628 6.91960 6.94331 7.02892 7.16077 7.21095 7.33064 7.37577 7.45466 7.57911 7.85022 7.99813 8.05118 8.25051 8.59828 8.86840 8.92849 10.18002 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.030715 B = 0.003425 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.400152 B = 8174.237742 C = 8821.754593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.158 3.842 3 C -0.133 4.133 4 N -0.837 5.837 5 C -0.104 4.104 6 C -0.096 4.096 7 C -0.126 4.126 8 C -0.009 4.009 9 C -0.043 4.043 10 C -0.220 4.220 11 C -0.109 4.109 12 C -0.155 4.155 13 C 0.106 3.894 14 C -0.466 4.466 15 H 0.078 0.922 16 C 0.076 3.924 17 N -0.795 5.795 18 Si 0.908 3.092 19 H -0.268 1.268 20 H -0.278 1.278 21 H -0.262 1.262 22 C -0.203 4.203 23 C -0.122 4.122 24 C -0.116 4.116 25 H 0.065 0.935 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.343 0.657 32 H 0.338 0.662 33 H 0.127 0.873 34 H 0.122 0.878 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.280 0.720 39 H 0.097 0.903 40 H 0.124 0.876 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.848 4.852 -14.177 15.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.065 3.935 3 C -0.191 4.191 4 N -0.367 5.367 5 C -0.104 4.104 6 C -0.114 4.114 7 C -0.144 4.144 8 C -0.009 4.009 9 C -0.043 4.043 10 C -0.239 4.239 11 C -0.127 4.127 12 C -0.175 4.175 13 C 0.104 3.896 14 C -0.495 4.495 15 H 0.096 0.904 16 C -0.141 4.141 17 N -0.421 5.421 18 Si 0.733 3.267 19 H -0.193 1.193 20 H -0.203 1.203 21 H -0.186 1.186 22 C -0.222 4.222 23 C -0.140 4.140 24 C -0.134 4.134 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.156 0.844 32 H 0.150 0.850 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.137 0.863 38 H 0.091 0.909 39 H 0.115 0.885 40 H 0.142 0.858 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.922 5.056 -13.732 15.150 hybrid contribution -1.354 -0.346 0.638 1.536 sum -5.276 4.711 -13.094 14.882 Atomic orbital electron populations 1.22689 0.96898 1.02144 1.02187 1.19544 0.91506 0.93786 0.88645 1.21801 1.02158 0.93833 1.01322 1.58896 1.67425 1.06784 1.03561 1.19535 0.96041 1.00749 0.94081 1.20903 0.95547 0.96914 0.98075 1.21311 1.00162 1.00445 0.92516 1.19185 0.93374 0.94985 0.93404 1.18354 0.95441 0.98746 0.91773 1.20442 0.97842 1.07720 0.97891 1.20639 0.98349 0.99926 0.93794 1.21431 0.97158 1.02137 0.96732 1.17542 0.91871 0.88310 0.91863 1.19558 0.95527 1.44171 0.90265 0.90431 1.25891 0.94978 0.92431 1.00817 1.69824 1.10171 1.34849 1.27211 0.86318 0.80774 0.79729 0.79930 1.19284 1.20342 1.18631 1.21094 1.01005 1.06219 0.93889 1.21271 0.96343 0.98130 0.98266 1.20912 0.99497 1.00226 0.92794 0.91567 0.92796 0.92433 0.91704 0.92937 0.92105 0.84425 0.84952 0.85559 0.86040 0.89016 0.89172 0.86344 0.90873 0.88526 0.85772 0.86634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 8.06 37.16 0.30 -1.37 16 2 C 0.16 1.67 1.06 -132.75 -0.14 1.53 16 3 C -0.13 -1.35 8.75 37.16 0.33 -1.03 16 4 N -0.84 -7.82 7.76 -0.19 0.00 -7.82 16 5 C -0.10 -1.43 4.76 -104.56 -0.50 -1.93 16 6 C -0.10 -1.44 9.29 -39.63 -0.37 -1.81 16 7 C -0.13 -2.18 9.43 -39.25 -0.37 -2.55 16 8 C -0.01 -0.18 5.88 -104.89 -0.62 -0.80 16 9 C -0.04 -0.98 5.87 -104.97 -0.62 -1.60 16 10 C -0.22 -4.95 9.44 -38.97 -0.37 -5.32 16 11 C -0.11 -2.56 10.01 -39.71 -0.40 -2.96 16 12 C -0.16 -4.04 8.69 -38.82 -0.34 -4.38 16 13 C 0.11 2.84 5.57 -106.87 -0.60 2.24 16 14 C -0.47 -12.33 9.05 -37.74 -0.34 -12.67 16 15 H 0.08 1.97 7.91 -52.49 -0.42 1.56 16 16 C 0.08 1.91 5.14 -17.34 -0.09 1.82 16 17 N -0.80 -20.55 10.96 55.55 0.61 -19.94 16 18 Si 0.91 18.63 29.60 -169.99 -5.03 13.60 16 19 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 20 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 21 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 22 C -0.20 -4.98 9.17 -38.53 -0.35 -5.34 16 23 C -0.12 -2.16 9.42 -39.26 -0.37 -2.53 16 24 C -0.12 -1.72 9.13 -39.63 -0.36 -2.08 16 25 H 0.07 0.62 6.50 -51.93 -0.34 0.28 16 26 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.34 3.13 8.96 -39.29 -0.35 2.77 16 32 H 0.34 2.49 9.00 -39.29 -0.35 2.14 16 33 H 0.13 1.72 7.39 -52.49 -0.39 1.34 16 34 H 0.12 2.01 6.19 -52.49 -0.32 1.68 16 35 H 0.09 1.83 6.18 -52.48 -0.32 1.50 16 36 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 37 H 0.12 3.16 6.15 -52.49 -0.32 2.84 16 38 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 39 H 0.10 2.23 6.19 -52.49 -0.33 1.90 16 40 H 0.12 2.18 6.20 -52.49 -0.33 1.85 16 41 H 0.12 1.45 6.15 -52.49 -0.32 1.12 16 LS Contribution 332.21 15.07 5.01 5.01 Total: -1.00 -27.63 332.21 -10.08 -37.70 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -5.46 Total: 12.20 kcal Atomic # 6 Polarization: -35.55 SS G_CDS: -5.20 Total: -40.75 kcal Atomic # 7 Polarization: -28.37 SS G_CDS: 0.61 Total: -27.77 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.60 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.63 -10.08 -37.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245914184.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.661 kcal (2) G-P(sol) polarization free energy of solvation -27.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds