Wall clock time and date at job start Tue Mar 31 2020 05:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47035 * 2 1 4 4 N 1.46898 * 109.47194 * 239.99762 * 2 1 3 5 5 C 1.50704 * 109.46817 * 119.99733 * 2 1 3 6 6 C 1.38394 * 119.84551 * 150.00564 * 5 2 1 7 7 C 1.37937 * 120.14466 * 179.74541 * 6 5 2 8 8 C 1.39647 * 119.84667 * 0.24927 * 7 6 5 9 9 C 1.47875 * 120.14426 * 179.97438 * 8 7 6 10 10 C 1.39162 * 120.33368 * 309.72258 * 9 8 7 11 11 C 1.38101 * 119.97780 * 179.69762 * 10 9 8 12 12 C 1.38916 * 120.67273 * 0.60703 * 11 10 9 13 13 C 1.36434 * 120.68958 * 359.67787 * 12 11 10 14 14 C 1.40755 * 119.98529 * 0.02562 * 13 12 11 15 15 C 1.40878 * 120.32670 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00084 * 153.65056 * 15 14 13 17 17 C 1.40076 * 120.00406 * 333.63845 * 15 14 13 18 18 N 1.30772 * 119.99664 * 344.32319 * 17 15 14 19 19 Si 1.86799 * 120.00073 * 164.31922 * 17 15 14 20 20 H 1.48497 * 109.47082 * 60.00555 * 19 17 15 21 21 H 1.48495 * 109.46709 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47224 * 300.00286 * 19 17 15 23 23 C 1.39646 * 119.70440 * 0.02562 * 8 7 6 24 24 C 1.37924 * 119.85019 * 359.97438 * 23 8 7 25 25 H 1.08998 * 109.47456 * 300.00617 * 1 2 3 26 26 H 1.09005 * 109.46949 * 60.00445 * 1 2 3 27 27 H 1.08995 * 109.47143 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46627 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46729 * 299.99333 * 3 2 1 30 30 H 1.08996 * 109.47233 * 59.99870 * 3 2 1 31 31 H 1.00910 * 110.99809 * 180.02562 * 4 2 1 32 32 H 1.00902 * 111.00076 * 303.95198 * 4 2 1 33 33 H 1.07999 * 119.92805 * 0.02562 * 6 5 2 34 34 H 1.07997 * 120.07211 * 180.22965 * 7 6 5 35 35 H 1.07999 * 120.01256 * 0.02562 * 10 9 8 36 36 H 1.07999 * 119.65956 * 180.32169 * 11 10 9 37 37 H 1.08008 * 119.65405 * 179.69316 * 12 11 10 38 38 H 1.08001 * 120.00743 * 180.02562 * 13 12 11 39 39 H 0.97003 * 119.99644 * 179.97438 * 18 17 15 40 40 H 1.07999 * 120.07224 * 179.97438 * 23 8 7 41 41 H 1.08000 * 119.92630 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0323 -0.7104 1.2306 6 6 3.2420 -1.3815 1.1928 7 6 3.7101 -2.0294 2.3170 8 6 2.9578 -2.0113 3.4934 9 6 3.4531 -2.7041 4.7023 10 6 3.8830 -4.0256 4.6285 11 6 4.3500 -4.6635 5.7608 12 6 4.3849 -4.0035 6.9827 13 6 3.9646 -2.7097 7.0874 14 6 3.4890 -2.0303 5.9501 15 6 3.0527 -0.6945 6.0502 16 1 3.0942 -0.0468 5.1870 17 6 2.5650 -0.2064 7.2692 18 7 2.2252 -1.0395 8.2181 19 14 2.4001 1.6346 7.5393 20 1 1.4719 2.2020 6.5286 21 1 1.8655 1.8891 8.9011 22 1 3.7324 2.2762 7.4032 23 6 1.7353 -1.3370 3.5227 24 6 1.2790 -0.6933 2.3914 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.0284 -0.7063 -1.2224 32 1 1.6442 -1.6274 -1.2558 33 1 3.8230 -1.3942 0.2825 34 1 4.6561 -2.5496 2.2874 35 1 3.8565 -4.5504 3.6850 36 1 4.6873 -5.6875 5.6967 37 1 4.7487 -4.5198 7.8588 38 1 3.9969 -2.2070 8.0427 39 1 1.8877 -0.7015 9.0624 40 1 1.1485 -1.3196 4.4292 41 1 0.3339 -0.1711 2.4128 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245914868.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:20 Heat of formation + Delta-G solvation = 28.308934 kcal Electronic energy + Delta-G solvation = -21417.483493 eV Core-core repulsion = 18453.778681 eV Total energy + Delta-G solvation = -2963.704811 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.44567 -37.73178 -35.84167 -33.78216 -31.22823 -30.84833 -29.61762 -29.13789 -27.66981 -27.20550 -25.34528 -22.73774 -21.88184 -20.68137 -20.14873 -19.01777 -17.41023 -16.52281 -15.67918 -15.51857 -14.95197 -14.69971 -14.26136 -13.87758 -13.64053 -13.40004 -13.01675 -12.90552 -12.68831 -12.52728 -11.94801 -11.83940 -11.71789 -11.63582 -11.57262 -11.25887 -11.15202 -10.97654 -10.85208 -10.61637 -10.52289 -10.26057 -9.70366 -9.46786 -9.27886 -8.75542 -8.30165 -8.16481 -7.47110 -7.20116 -6.83505 -4.43412 1.82628 2.06925 2.74118 2.98916 3.00844 3.04125 3.18376 3.85237 4.40131 4.55341 4.58348 4.97080 5.09659 5.23926 5.44619 5.51500 5.64087 5.77064 5.83270 5.90851 5.92796 5.96621 6.12022 6.15957 6.18329 6.27467 6.34174 6.36452 6.52810 6.68627 6.73343 6.95451 6.99482 7.06209 7.14139 7.24713 7.29605 7.45033 7.47488 7.51406 7.64508 7.85993 7.97964 8.03130 8.18790 8.52770 8.77314 8.86866 10.06656 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015233 B = 0.005912 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.627047 B = 4734.646619 C = 6172.321279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.157 3.843 3 C -0.132 4.132 4 N -0.837 5.837 5 C -0.142 4.142 6 C -0.126 4.126 7 C -0.128 4.128 8 C 0.023 3.977 9 C -0.190 4.190 10 C -0.071 4.071 11 C -0.244 4.244 12 C -0.101 4.101 13 C -0.159 4.159 14 C 0.130 3.870 15 C -0.450 4.450 16 H 0.082 0.918 17 C 0.077 3.923 18 N -0.789 5.789 19 Si 0.905 3.095 20 H -0.263 1.263 21 H -0.277 1.277 22 H -0.263 1.263 23 C -0.095 4.095 24 C -0.119 4.119 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.339 0.661 32 H 0.340 0.660 33 H 0.106 0.894 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.119 0.881 39 H 0.283 0.717 40 H 0.128 0.872 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.536 2.306 -9.804 10.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.064 3.936 3 C -0.190 4.190 4 N -0.367 5.367 5 C -0.144 4.144 6 C -0.145 4.145 7 C -0.147 4.147 8 C 0.022 3.978 9 C -0.192 4.192 10 C -0.090 4.090 11 C -0.263 4.263 12 C -0.120 4.120 13 C -0.178 4.178 14 C 0.128 3.872 15 C -0.479 4.479 16 H 0.100 0.900 17 C -0.142 4.142 18 N -0.413 5.413 19 Si 0.729 3.271 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.187 1.187 23 C -0.113 4.113 24 C -0.138 4.138 25 H 0.082 0.918 26 H 0.078 0.922 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.152 0.848 32 H 0.152 0.848 33 H 0.124 0.876 34 H 0.131 0.869 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.105 0.895 38 H 0.136 0.864 39 H 0.094 0.906 40 H 0.146 0.854 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.027 2.896 -9.981 10.588 hybrid contribution 0.414 0.005 1.077 1.153 sum -1.613 2.901 -8.904 9.503 Atomic orbital electron populations 1.21863 0.93777 1.01994 1.01841 1.19607 0.94820 0.93526 0.85637 1.21788 1.01019 0.94482 1.01709 1.59121 1.13855 1.23547 1.40159 1.20478 0.96166 1.01338 0.96406 1.20618 0.95982 0.99967 0.97911 1.21221 0.99591 1.00954 0.92904 1.18848 0.92526 0.94089 0.92294 1.18624 1.13227 0.94087 0.93228 1.20559 0.98094 0.93894 0.96421 1.20279 1.13126 0.99176 0.93743 1.20484 1.00131 0.95566 0.95807 1.21066 1.02592 0.94507 0.99631 1.17527 0.87571 0.92512 0.89612 1.19555 1.35913 0.96247 0.96165 0.89963 1.25945 0.92929 1.00099 0.95240 1.69784 1.29560 1.36752 1.05233 0.86402 0.79889 0.82560 0.78251 1.18752 1.20239 1.18736 1.21466 0.95834 0.96334 0.97667 1.20935 0.99565 1.00524 0.92736 0.91807 0.92158 0.92678 0.92826 0.92162 0.92108 0.84761 0.84756 0.87644 0.86924 0.89321 0.89450 0.89479 0.86352 0.90629 0.85379 0.86793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.03 37.16 0.30 -1.31 16 2 C 0.16 1.99 1.09 -132.75 -0.14 1.85 16 3 C -0.13 -1.62 8.75 37.16 0.33 -1.30 16 4 N -0.84 -9.51 8.57 -0.19 0.00 -9.52 16 5 C -0.14 -2.20 4.83 -104.50 -0.50 -2.70 16 6 C -0.13 -2.01 9.27 -39.63 -0.37 -2.38 16 7 C -0.13 -2.39 9.53 -39.17 -0.37 -2.76 16 8 C 0.02 0.48 4.92 -104.90 -0.52 -0.04 16 9 C -0.19 -4.51 5.52 -104.23 -0.58 -5.09 16 10 C -0.07 -1.60 9.52 -39.29 -0.37 -1.97 16 11 C -0.24 -5.41 10.03 -39.38 -0.39 -5.81 16 12 C -0.10 -2.35 9.96 -39.98 -0.40 -2.74 16 13 C -0.16 -4.02 8.62 -39.28 -0.34 -4.36 16 14 C 0.13 3.34 5.56 -106.56 -0.59 2.75 16 15 C -0.45 -11.35 7.13 -37.89 -0.27 -11.62 16 16 H 0.08 2.06 6.62 -52.48 -0.35 1.72 16 17 C 0.08 1.84 5.17 -17.31 -0.09 1.75 16 18 N -0.79 -19.54 10.95 55.55 0.61 -18.94 16 19 Si 0.90 18.23 29.59 -169.99 -5.03 13.20 16 20 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 21 H -0.28 -5.44 7.11 56.52 0.40 -5.03 16 22 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 23 C -0.09 -1.93 8.00 -39.17 -0.31 -2.24 16 24 C -0.12 -2.05 9.12 -39.64 -0.36 -2.41 16 25 H 0.06 0.73 6.50 -51.93 -0.34 0.39 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.34 3.62 7.18 -39.29 -0.28 3.34 16 32 H 0.34 3.69 8.98 -39.29 -0.35 3.34 16 33 H 0.11 1.40 6.35 -52.49 -0.33 1.07 16 34 H 0.11 1.99 8.05 -52.49 -0.42 1.57 16 35 H 0.09 1.78 8.05 -52.49 -0.42 1.36 16 36 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 37 H 0.09 1.80 8.06 -52.48 -0.42 1.37 16 38 H 0.12 3.07 6.21 -52.49 -0.33 2.75 16 39 H 0.28 6.41 8.29 -40.82 -0.34 6.07 16 40 H 0.13 2.80 7.31 -52.49 -0.38 2.42 16 41 H 0.11 1.73 6.14 -52.49 -0.32 1.41 16 LS Contribution 331.98 15.07 5.00 5.00 Total: -1.00 -26.01 331.98 -10.03 -36.05 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -5.62 Total: 14.59 kcal Atomic # 6 Polarization: -35.39 SS G_CDS: -4.99 Total: -40.38 kcal Atomic # 7 Polarization: -29.06 SS G_CDS: 0.61 Total: -28.45 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -26.01 -10.03 -36.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245914868.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.355 kcal (2) G-P(sol) polarization free energy of solvation -26.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds