Wall clock time and date at job start Tue Mar 31 2020 05:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47035 * 2 1 4 4 N 1.46898 * 109.47194 * 239.99762 * 2 1 3 5 5 C 1.50704 * 109.46817 * 119.99733 * 2 1 3 6 6 C 1.38394 * 119.84551 * 150.00564 * 5 2 1 7 7 C 1.37937 * 120.14466 * 179.74541 * 6 5 2 8 8 C 1.39647 * 119.84667 * 0.24927 * 7 6 5 9 9 C 1.47875 * 120.14426 * 179.97438 * 8 7 6 10 10 C 1.39162 * 120.33368 * 309.72258 * 9 8 7 11 11 C 1.38101 * 119.97780 * 179.69762 * 10 9 8 12 12 C 1.38916 * 120.67273 * 0.60703 * 11 10 9 13 13 C 1.36434 * 120.68958 * 359.67787 * 12 11 10 14 14 C 1.40755 * 119.98529 * 0.02562 * 13 12 11 15 15 C 1.40878 * 120.32670 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00084 * 153.65056 * 15 14 13 17 17 C 1.40076 * 120.00406 * 333.63845 * 15 14 13 18 18 N 1.30772 * 119.99664 * 344.32319 * 17 15 14 19 19 Si 1.86799 * 120.00073 * 164.31922 * 17 15 14 20 20 H 1.48497 * 109.47082 * 60.00555 * 19 17 15 21 21 H 1.48495 * 109.46709 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47224 * 300.00286 * 19 17 15 23 23 C 1.39646 * 119.70440 * 0.02562 * 8 7 6 24 24 C 1.37924 * 119.85019 * 359.97438 * 23 8 7 25 25 H 1.08998 * 109.47456 * 300.00617 * 1 2 3 26 26 H 1.09005 * 109.46949 * 60.00445 * 1 2 3 27 27 H 1.08995 * 109.47143 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46627 * 179.97438 * 3 2 1 29 29 H 1.08997 * 109.46729 * 299.99333 * 3 2 1 30 30 H 1.08996 * 109.47233 * 59.99870 * 3 2 1 31 31 H 1.00910 * 110.99809 * 180.02562 * 4 2 1 32 32 H 1.00902 * 111.00076 * 303.95198 * 4 2 1 33 33 H 1.07999 * 119.92805 * 0.02562 * 6 5 2 34 34 H 1.07997 * 120.07211 * 180.22965 * 7 6 5 35 35 H 1.07999 * 120.01256 * 0.02562 * 10 9 8 36 36 H 1.07999 * 119.65956 * 180.32169 * 11 10 9 37 37 H 1.08008 * 119.65405 * 179.69316 * 12 11 10 38 38 H 1.08001 * 120.00743 * 180.02562 * 13 12 11 39 39 H 0.97003 * 119.99644 * 179.97438 * 18 17 15 40 40 H 1.07999 * 120.07224 * 179.97438 * 23 8 7 41 41 H 1.08000 * 119.92630 * 180.02562 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0323 -0.7104 1.2306 6 6 3.2420 -1.3815 1.1928 7 6 3.7101 -2.0294 2.3170 8 6 2.9578 -2.0113 3.4934 9 6 3.4531 -2.7041 4.7023 10 6 3.8830 -4.0256 4.6285 11 6 4.3500 -4.6635 5.7608 12 6 4.3849 -4.0035 6.9827 13 6 3.9646 -2.7097 7.0874 14 6 3.4890 -2.0303 5.9501 15 6 3.0527 -0.6945 6.0502 16 1 3.0942 -0.0468 5.1870 17 6 2.5650 -0.2064 7.2692 18 7 2.2252 -1.0395 8.2181 19 14 2.4001 1.6346 7.5393 20 1 1.4719 2.2020 6.5286 21 1 1.8655 1.8891 8.9011 22 1 3.7324 2.2762 7.4032 23 6 1.7353 -1.3370 3.5227 24 6 1.2790 -0.6933 2.3914 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.0284 -0.7063 -1.2224 32 1 1.6442 -1.6274 -1.2558 33 1 3.8230 -1.3942 0.2825 34 1 4.6561 -2.5496 2.2874 35 1 3.8565 -4.5504 3.6850 36 1 4.6873 -5.6875 5.6967 37 1 4.7487 -4.5198 7.8588 38 1 3.9969 -2.2070 8.0427 39 1 1.8877 -0.7015 9.0624 40 1 1.1485 -1.3196 4.4292 41 1 0.3339 -0.1711 2.4128 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245914868.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:12:19 Heat of formation + Delta-G solvation = 16.367190 kcal Electronic energy + Delta-G solvation = -21418.001325 eV Core-core repulsion = 18453.778681 eV Total energy + Delta-G solvation = -2964.222644 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.80466 -39.36043 -37.14317 -35.59775 -32.78571 -32.21432 -31.36075 -30.25589 -29.21610 -28.16142 -27.15266 -24.20422 -23.39904 -22.38943 -21.69631 -20.27333 -19.22459 -17.91051 -17.18955 -16.66746 -16.46966 -15.99647 -15.87955 -15.31055 -15.08891 -14.90499 -14.46228 -14.40635 -14.25161 -13.74557 -13.49761 -13.24639 -13.04319 -12.90540 -12.84518 -12.73146 -12.65479 -12.53814 -12.18878 -12.02386 -11.95979 -11.63682 -11.41248 -11.21267 -11.08343 -9.84086 -9.74912 -9.62961 -9.32019 -8.89432 -8.60804 -6.31506 0.32708 0.63849 0.99700 1.22824 1.34348 1.44356 1.50899 2.16672 2.72359 2.97833 3.60539 3.72685 3.84539 4.02341 4.15887 4.23675 4.28112 4.33221 4.44234 4.59445 4.66008 4.75415 4.85008 4.85954 4.97718 4.99636 5.04086 5.11342 5.21447 5.27590 5.30729 5.32863 5.34911 5.43741 5.58266 5.69824 5.72342 5.87653 6.02234 6.15264 6.16094 6.26945 6.29658 6.37046 6.61604 6.67390 6.91848 7.02123 8.29289 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015233 B = 0.005912 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.627047 B = 4734.646619 C = 6172.321279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.160 3.840 3 C -0.132 4.132 4 N -0.831 5.831 5 C -0.128 4.128 6 C -0.119 4.119 7 C -0.132 4.132 8 C -0.010 4.010 9 C -0.196 4.196 10 C -0.081 4.081 11 C -0.243 4.243 12 C -0.109 4.109 13 C -0.187 4.187 14 C 0.098 3.902 15 C -0.472 4.472 16 H 0.073 0.927 17 C 0.039 3.961 18 N -0.821 5.821 19 Si 0.969 3.031 20 H -0.259 1.259 21 H -0.266 1.266 22 H -0.263 1.263 23 C -0.112 4.112 24 C -0.120 4.120 25 H 0.063 0.937 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.055 0.945 31 H 0.345 0.655 32 H 0.345 0.655 33 H 0.140 0.860 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.109 0.891 38 H 0.102 0.898 39 H 0.288 0.712 40 H 0.098 0.902 41 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.577 2.875 -12.358 12.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.067 3.933 3 C -0.190 4.190 4 N -0.362 5.362 5 C -0.130 4.130 6 C -0.137 4.137 7 C -0.150 4.150 8 C -0.010 4.010 9 C -0.197 4.197 10 C -0.099 4.099 11 C -0.262 4.262 12 C -0.127 4.127 13 C -0.206 4.206 14 C 0.095 3.905 15 C -0.501 4.501 16 H 0.091 0.909 17 C -0.177 4.177 18 N -0.446 5.446 19 Si 0.790 3.210 20 H -0.183 1.183 21 H -0.190 1.190 22 H -0.187 1.187 23 C -0.131 4.131 24 C -0.138 4.138 25 H 0.082 0.918 26 H 0.091 0.909 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.074 0.926 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.127 0.873 38 H 0.120 0.880 39 H 0.099 0.901 40 H 0.117 0.883 41 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.064 3.447 -12.544 13.172 hybrid contribution 0.426 -0.256 1.712 1.783 sum -1.638 3.191 -10.833 11.411 Atomic orbital electron populations 1.21866 0.92900 1.02169 1.02524 1.19646 0.95525 0.93601 0.84531 1.21787 1.00942 0.94019 1.02217 1.59111 1.14367 1.23917 1.38770 1.20910 0.95366 0.99827 0.96855 1.20950 0.96142 0.98446 0.98187 1.21335 0.99642 1.01321 0.92712 1.18865 0.93682 0.95908 0.92577 1.19034 1.12155 0.94831 0.93705 1.20896 0.97788 0.93605 0.97652 1.20660 1.11958 1.00425 0.93113 1.20762 0.99683 0.94969 0.97284 1.21059 1.04628 0.95767 0.99153 1.17895 0.88530 0.93297 0.90735 1.19592 1.37390 0.96453 0.96656 0.90858 1.26674 0.92189 1.04182 0.94612 1.69837 1.30467 1.38549 1.05795 0.85435 0.79728 0.77214 0.78607 1.18291 1.19024 1.18743 1.21300 0.95958 0.97952 0.97844 1.21132 1.00479 0.99888 0.92289 0.91800 0.90870 0.92793 0.92972 0.90719 0.92617 0.84091 0.84169 0.84258 0.86251 0.86937 0.86401 0.87313 0.88028 0.90091 0.88344 0.85008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 8.03 71.98 0.58 -2.22 16 2 C 0.16 3.55 1.09 2.79 0.00 3.55 16 3 C -0.13 -2.82 8.75 71.98 0.63 -2.19 16 4 N -0.83 -15.73 8.57 -154.51 -1.32 -17.06 16 5 C -0.13 -3.65 4.83 -19.79 -0.10 -3.75 16 6 C -0.12 -3.48 9.27 22.24 0.21 -3.28 16 7 C -0.13 -4.76 9.53 22.54 0.21 -4.55 16 8 C -0.01 -0.44 4.92 -20.05 -0.10 -0.54 16 9 C -0.20 -9.55 5.52 -19.61 -0.11 -9.66 16 10 C -0.08 -3.62 9.52 22.46 0.21 -3.41 16 11 C -0.24 -10.58 10.03 22.40 0.22 -10.36 16 12 C -0.11 -5.09 9.96 22.01 0.22 -4.87 16 13 C -0.19 -9.88 8.62 22.46 0.19 -9.68 16 14 C 0.10 5.26 5.56 -21.12 -0.12 5.14 16 15 C -0.47 -25.02 7.13 23.36 0.17 -24.85 16 16 H 0.07 3.88 6.62 -2.91 -0.02 3.86 16 17 C 0.04 1.94 5.17 85.30 0.44 2.39 16 18 N -0.82 -42.52 10.95 21.85 0.24 -42.28 16 19 Si 0.97 38.30 29.59 68.60 2.03 40.33 16 20 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 21 H -0.27 -9.91 7.11 99.48 0.71 -9.20 16 22 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 23 C -0.11 -4.69 8.00 22.54 0.18 -4.51 16 24 C -0.12 -4.01 9.12 22.23 0.20 -3.81 16 25 H 0.06 1.30 6.50 -2.39 -0.02 1.28 16 26 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 27 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.34 5.94 7.18 -89.69 -0.64 5.29 16 32 H 0.35 6.19 8.98 -89.69 -0.81 5.39 16 33 H 0.14 3.12 6.35 -2.91 -0.02 3.10 16 34 H 0.12 4.06 8.05 -2.91 -0.02 4.04 16 35 H 0.11 4.37 8.05 -2.91 -0.02 4.35 16 36 H 0.12 4.36 8.06 -2.91 -0.02 4.33 16 37 H 0.11 4.48 8.06 -2.91 -0.02 4.45 16 38 H 0.10 5.60 6.21 -2.91 -0.02 5.58 16 39 H 0.29 13.58 8.29 -92.71 -0.77 12.81 16 40 H 0.10 4.61 7.31 -2.91 -0.02 4.59 16 41 H 0.13 3.86 6.14 -2.91 -0.02 3.84 16 Total: -1.00 -58.19 331.98 3.60 -54.59 By element: Atomic # 1 Polarization: 41.42 SS G_CDS: -0.40 Total: 41.02 kcal Atomic # 6 Polarization: -79.66 SS G_CDS: 3.05 Total: -76.61 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: -1.08 Total: -59.34 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 2.03 Total: 40.33 kcal Total: -58.19 3.60 -54.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245914868.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.961 kcal (2) G-P(sol) polarization free energy of solvation -58.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds