Wall clock time and date at job start Tue Mar 31 2020 05:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.47164 * 2 1 4 4 C 1.46904 * 111.00163 * 206.53219 * 3 2 1 5 5 C 1.50702 * 109.46970 * 66.04608 * 4 3 2 6 6 H 1.08005 * 120.00135 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99977 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99987 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 119.99939 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.46963 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.47077 * 120.00084 * 9 7 5 12 12 H 1.48504 * 109.46787 * 239.99868 * 9 7 5 13 13 C 1.46894 * 110.99970 * 82.57740 * 3 2 1 14 14 C 1.50697 * 109.47442 * 285.68406 * 13 3 2 15 15 C 1.38387 * 120.04326 * 107.24438 * 14 13 3 16 16 F 1.35105 * 119.99206 * 0.02562 * 15 14 13 17 17 C 1.38470 * 120.00952 * 180.02562 * 15 14 13 18 18 C 1.38252 * 120.08408 * 359.94972 * 17 15 14 19 19 C 1.38133 * 120.07808 * 0.03184 * 18 17 15 20 20 C 1.50702 * 120.00079 * 180.02562 * 19 18 17 21 21 C 1.38670 * 120.04035 * 286.97205 * 14 13 3 22 22 O 1.35900 * 120.04073 * 359.97438 * 21 14 13 23 23 C 1.42898 * 117.00071 * 89.99857 * 22 21 14 24 24 H 1.08997 * 109.46702 * 294.41552 * 1 2 3 25 25 H 1.08998 * 109.47243 * 54.41142 * 1 2 3 26 26 H 1.08995 * 109.47081 * 174.41328 * 1 2 3 27 27 H 1.09008 * 109.47242 * 240.00145 * 2 1 3 28 28 H 1.08997 * 109.47397 * 120.00427 * 2 1 3 29 29 H 1.08995 * 109.47089 * 186.04540 * 4 3 2 30 30 H 1.09000 * 109.47026 * 306.04664 * 4 3 2 31 31 H 0.96998 * 120.00282 * 179.97438 * 8 7 5 32 32 H 1.09002 * 109.47585 * 45.68910 * 13 3 2 33 33 H 1.09011 * 109.47242 * 165.68369 * 13 3 2 34 34 H 1.08005 * 119.95763 * 179.97438 * 17 15 14 35 35 H 1.07997 * 119.95771 * 179.97438 * 18 17 15 36 36 H 1.09003 * 109.46877 * 89.99242 * 20 19 18 37 37 H 1.08996 * 109.47153 * 209.99433 * 20 19 18 38 38 H 1.08999 * 109.47176 * 329.99833 * 20 19 18 39 39 H 1.09000 * 109.47220 * 60.00009 * 23 22 21 40 40 H 1.09001 * 109.47211 * 179.97438 * 23 22 21 41 41 H 1.08997 * 109.47333 * 299.99935 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.3520 1.4723 -0.6126 5 6 3.2556 1.1262 -2.0762 6 1 2.3002 0.8667 -2.5080 7 6 4.3872 1.1396 -2.8638 8 7 5.5507 1.4550 -2.3379 9 14 4.2678 0.7098 -4.6777 10 1 2.8577 0.3936 -5.0197 11 1 4.7282 1.8637 -5.4912 12 1 5.1228 -0.4702 -4.9641 13 6 2.0281 1.9403 1.3599 14 6 0.6159 2.2503 1.7848 15 6 -0.0152 1.4546 2.7248 16 9 0.6351 0.3995 3.2625 17 6 -1.3131 1.7397 3.1143 18 6 -1.9798 2.8196 2.5660 19 6 -1.3531 3.6164 1.6277 20 6 -2.0812 4.7935 1.0315 21 6 -0.0508 3.3365 1.2384 22 8 0.5687 4.1232 0.3196 23 6 0.4209 3.7564 -1.0536 24 1 -0.3632 0.4248 0.9358 25 1 -0.3633 0.5980 -0.8357 26 1 -0.3633 -1.0227 -0.1000 27 1 1.8934 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.7362 2.4865 -0.5037 30 1 4.0261 0.7733 -0.1176 31 1 6.3469 1.4641 -2.8918 32 1 2.4630 1.2139 2.0464 33 1 2.6212 2.8549 1.3752 34 1 -1.8050 1.1180 3.8477 35 1 -2.9921 3.0399 2.8709 36 1 -1.8981 5.6797 1.6391 37 1 -1.7216 4.9675 0.0174 38 1 -3.1507 4.5846 1.0069 39 1 -0.6356 3.7695 -1.3215 40 1 0.9629 4.4654 -1.6794 41 1 0.8223 2.7548 -1.2074 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250243573.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:20 Heat of formation + Delta-G solvation = -53.246984 kcal Electronic energy + Delta-G solvation = -23437.260128 eV Core-core repulsion = 20039.249561 eV Total energy + Delta-G solvation = -3398.010566 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.74529 -40.04476 -36.89652 -36.77975 -32.99804 -32.20075 -30.91615 -29.98286 -27.48182 -26.81505 -25.78911 -24.52415 -22.47827 -21.92435 -20.92776 -19.83262 -17.89117 -17.05331 -16.41367 -15.91723 -15.55185 -15.04703 -14.86973 -14.73633 -14.23796 -14.12814 -13.89606 -13.70688 -13.34129 -12.94975 -12.76521 -12.33808 -12.23903 -12.17549 -11.82037 -11.64822 -11.48905 -11.27612 -11.03374 -10.92244 -10.84757 -10.61699 -10.50425 -10.08437 -9.84969 -9.47100 -9.24732 -8.49408 -8.44146 -8.22889 -7.28157 -6.05250 -4.06848 1.19383 1.26753 3.28446 3.36411 3.39934 3.44652 4.14251 4.39553 4.52366 4.81664 4.84733 4.90909 5.13222 5.27287 5.30913 5.55364 5.61006 5.65587 5.75967 5.78315 5.82078 5.89263 6.04568 6.09444 6.12825 6.19798 6.22801 6.32124 6.38010 6.41243 6.58894 6.70963 6.74351 6.82172 6.89090 7.28090 7.35474 7.77169 7.88385 8.05952 8.17399 8.49642 9.00956 9.57422 11.05472 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021645 B = 0.005610 C = 0.004998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1293.307226 B = 4990.222167 C = 5600.582853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 N -0.526 5.526 4 C 0.193 3.807 5 C -0.506 4.506 6 H 0.064 0.936 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.092 3.908 14 C -0.110 4.110 15 C 0.108 3.892 16 F -0.138 7.138 17 C -0.165 4.165 18 C -0.089 4.089 19 C -0.122 4.122 20 C -0.106 4.106 21 C 0.150 3.850 22 O -0.331 6.331 23 C 0.027 3.973 24 H 0.050 0.950 25 H 0.055 0.945 26 H 0.044 0.956 27 H 0.085 0.915 28 H 0.022 0.978 29 H 0.033 0.967 30 H -0.009 1.009 31 H 0.261 0.739 32 H 0.039 0.961 33 H 0.086 0.914 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.027 0.973 40 H 0.086 0.914 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.740 3.042 8.397 17.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.075 4.075 3 N -0.250 5.250 4 C 0.068 3.932 5 C -0.545 4.545 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.212 1.212 13 C -0.036 4.036 14 C -0.112 4.112 15 C 0.088 3.912 16 F -0.116 7.116 17 C -0.184 4.184 18 C -0.108 4.108 19 C -0.123 4.123 20 C -0.162 4.162 21 C 0.105 3.895 22 O -0.248 6.248 23 C -0.067 4.067 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.103 0.897 28 H 0.040 0.960 29 H 0.051 0.949 30 H 0.009 0.991 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.104 0.896 34 H 0.150 0.850 35 H 0.148 0.852 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.046 0.954 40 H 0.104 0.896 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.703 3.459 8.086 17.132 hybrid contribution 0.654 -1.095 -0.435 1.348 sum -14.049 2.364 7.650 16.170 Atomic orbital electron populations 1.22031 0.96865 1.00166 1.01767 1.22056 0.94381 0.90078 1.00985 1.62112 1.29775 1.18297 1.14827 1.19775 0.82377 0.96949 0.94089 1.21149 0.94080 1.45891 0.93333 0.91827 1.24974 0.95303 0.95517 0.98674 1.69967 0.98773 1.48860 1.35946 0.86489 0.78101 0.77969 0.85135 1.19690 1.21023 1.21159 1.20906 0.90480 1.00543 0.91683 1.20377 0.98900 0.94605 0.97347 1.17299 0.91239 0.86470 0.96180 1.91482 1.81267 1.54376 1.84509 1.21008 0.93651 1.00341 1.03427 1.20626 0.99728 0.94201 0.96219 1.20245 0.93667 0.98907 0.99461 1.20651 0.98967 0.95294 1.01335 1.18014 0.89558 0.89915 0.92038 1.85883 1.72851 1.50053 1.15962 1.23366 0.99430 1.05619 0.78248 0.93153 0.92603 0.93727 0.89665 0.95955 0.94935 0.99103 0.92959 0.94282 0.89582 0.85020 0.85153 0.91156 0.91164 0.91836 0.95401 0.89552 0.88026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.62 37.16 0.36 -2.21 16 2 C 0.05 1.05 5.52 -3.82 -0.02 1.03 16 3 N -0.53 -10.99 2.01 -237.51 -0.48 -11.47 16 4 C 0.19 4.87 4.69 -4.97 -0.02 4.85 16 5 C -0.51 -13.59 8.16 -34.44 -0.28 -13.87 16 6 H 0.06 1.69 7.42 -52.48 -0.39 1.30 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.16 13.29 55.43 0.74 -25.42 16 9 Si 0.90 21.16 29.54 -169.99 -5.02 16.14 16 10 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 C 0.09 1.76 4.66 -4.98 -0.02 1.74 16 14 C -0.11 -1.86 3.70 -104.41 -0.39 -2.25 16 15 C 0.11 1.66 4.89 -39.44 -0.19 1.47 16 16 F -0.14 -2.24 16.25 2.25 0.04 -2.20 16 17 C -0.17 -2.07 10.02 -39.49 -0.40 -2.47 16 18 C -0.09 -1.03 9.69 -39.61 -0.38 -1.42 16 19 C -0.12 -1.62 5.89 -104.46 -0.62 -2.23 16 20 C -0.11 -1.14 9.79 36.01 0.35 -0.78 16 21 C 0.15 2.41 5.67 -39.23 -0.22 2.19 16 22 O -0.33 -5.73 9.01 -19.43 -0.17 -5.90 16 23 C 0.03 0.44 10.65 101.05 1.08 1.52 16 24 H 0.05 0.83 3.94 -51.93 -0.20 0.63 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.08 1.84 6.60 -51.92 -0.34 1.50 16 28 H 0.02 0.44 7.61 -51.93 -0.40 0.04 16 29 H 0.03 0.88 7.84 -51.93 -0.41 0.48 16 30 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.04 0.75 6.79 -51.93 -0.35 0.40 16 33 H 0.09 1.71 7.68 -51.92 -0.40 1.31 16 34 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 35 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.80 6.30 -51.93 -0.33 0.48 16 38 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 39 H 0.03 0.40 7.23 -51.93 -0.38 0.02 16 40 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.10 1.97 5.73 -51.93 -0.30 1.67 16 LS Contribution 330.15 15.07 4.98 4.98 Total: -1.00 -28.83 330.15 -6.78 -35.61 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -6.00 Total: -0.77 kcal Atomic # 6 Polarization: -10.10 SS G_CDS: -0.86 Total: -10.96 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.26 Total: -36.89 kcal Atomic # 8 Polarization: -5.73 SS G_CDS: -0.17 Total: -5.90 kcal Atomic # 9 Polarization: -2.24 SS G_CDS: 0.04 Total: -2.20 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.83 -6.78 -35.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250243573.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.636 kcal (2) G-P(sol) polarization free energy of solvation -28.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds