Wall clock time and date at job start Tue Mar 31 2020 05:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30518 * 126.34487 * 2 1 4 4 N 1.28604 * 109.66680 * 179.97438 * 3 2 1 5 5 C 1.30519 * 109.67489 * 0.02562 * 4 3 2 6 6 C 1.50700 * 126.34573 * 180.02562 * 5 4 3 7 7 N 1.46502 * 109.47021 * 89.97011 * 6 5 4 8 8 C 1.34778 * 119.99666 * 180.02562 * 7 6 5 9 9 O 1.21583 * 120.00362 * 0.02562 * 8 7 6 10 10 N 1.34775 * 119.99995 * 180.02562 * 8 7 6 11 11 C 1.46502 * 120.00497 * 179.97438 * 10 8 7 12 12 C 1.52992 * 109.47470 * 180.02562 * 11 10 8 13 13 C 1.52999 * 109.47074 * 180.02562 * 12 11 10 14 14 C 1.50707 * 109.46874 * 179.97438 * 13 12 11 15 15 H 1.07999 * 120.00093 * 359.97438 * 14 13 12 16 16 C 1.37877 * 119.99697 * 180.02562 * 14 13 12 17 17 N 1.31516 * 120.00121 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99923 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46931 * 359.97438 * 18 16 14 20 20 H 1.48505 * 109.46807 * 119.99689 * 18 16 14 21 21 H 1.48495 * 109.47018 * 239.99598 * 18 16 14 22 22 N 1.35487 * 126.34300 * 179.97438 * 2 1 3 23 23 C 1.46500 * 126.98328 * 0.03570 * 22 2 1 24 24 H 1.08996 * 109.47221 * 90.02384 * 1 2 3 25 25 H 1.09000 * 109.47554 * 210.02742 * 1 2 3 26 26 H 1.09005 * 109.46969 * 330.02216 * 1 2 3 27 27 H 1.09000 * 109.46900 * 209.96980 * 6 5 4 28 28 H 1.08999 * 109.47044 * 329.97450 * 6 5 4 29 29 H 0.96998 * 120.00205 * 359.97438 * 7 6 5 30 30 H 0.97010 * 119.99968 * 0.02562 * 10 8 7 31 31 H 1.09003 * 109.46708 * 300.00323 * 11 10 8 32 32 H 1.09000 * 109.46747 * 60.00056 * 11 10 8 33 33 H 1.09005 * 109.47000 * 300.00236 * 12 11 10 34 34 H 1.08994 * 109.47502 * 59.99665 * 12 11 10 35 35 H 1.08990 * 109.46937 * 299.99485 * 13 12 11 36 36 H 1.08996 * 109.47280 * 60.00173 * 13 12 11 37 37 H 0.97001 * 120.00036 * 180.02562 * 17 16 14 38 38 H 1.08997 * 109.47418 * 270.00176 * 23 22 2 39 39 H 1.09007 * 109.47249 * 30.00075 * 23 22 2 40 40 H 1.09003 * 109.47398 * 149.99691 * 23 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2806 1.0513 0.0000 4 7 3.5125 0.6822 0.0005 5 6 3.5807 -0.6212 0.0004 6 6 4.8396 -1.4497 0.0014 7 7 5.2466 -1.7178 1.3830 8 6 6.3536 -2.4457 1.6301 9 8 7.0147 -2.8795 0.7065 10 7 6.7278 -2.6928 2.9010 11 6 7.9308 -3.4846 3.1698 12 6 8.1278 -3.6160 4.6813 13 6 9.3845 -4.4424 4.9618 14 6 9.5789 -4.5713 6.4507 15 1 8.8766 -4.1096 7.1290 16 6 10.6539 -5.2777 6.9470 17 7 11.5094 -5.8394 6.1210 18 14 10.8953 -5.4369 8.7925 19 1 9.8035 -4.7192 9.4982 20 1 10.8715 -6.8723 9.1727 21 1 12.2030 -4.8456 9.1735 22 7 2.3100 -1.0913 0.0005 23 6 1.8896 -2.4947 0.0004 24 1 -0.3633 -0.0004 -1.0276 25 1 -0.3634 -0.8897 0.5142 26 1 -0.3633 0.8902 0.5135 27 1 4.6541 -2.3930 -0.5123 28 1 5.6327 -0.9061 -0.5120 29 1 4.7198 -1.3708 2.1198 30 1 6.2002 -2.3471 3.6380 31 1 7.8188 -4.4760 2.7307 32 1 8.7972 -2.9890 2.7318 33 1 8.2396 -2.6247 5.1207 34 1 7.2614 -4.1117 5.1189 35 1 9.2732 -5.4335 4.5225 36 1 10.2508 -3.9462 4.5244 37 1 12.2656 -6.3367 6.4702 38 1 1.7848 -2.8427 1.0280 39 1 0.9330 -2.5875 -0.5140 40 1 2.6382 -3.0982 -0.5131 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251629408.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:08:12 Heat of formation + Delta-G solvation = 34.383183 kcal Electronic energy + Delta-G solvation = -20867.741604 eV Core-core repulsion = 17525.743680 eV Total energy + Delta-G solvation = -3341.997924 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.60079 -39.88230 -35.99843 -35.53802 -34.91095 -33.36348 -32.68337 -31.18043 -29.19065 -27.94547 -27.02496 -25.89780 -23.06290 -21.71168 -21.30564 -20.95396 -20.44744 -18.37624 -17.32668 -17.07303 -16.53188 -15.96520 -15.76889 -14.96793 -14.87179 -14.50387 -14.24856 -14.18351 -14.11007 -13.85226 -13.40639 -13.15252 -13.08315 -12.97065 -12.30144 -11.90083 -11.81948 -11.72272 -10.93086 -10.75126 -10.74110 -10.65992 -10.57990 -10.27916 -9.87864 -9.56447 -9.41960 -9.39220 -9.12067 -8.69031 -8.38283 -6.02718 -4.05737 1.18653 1.92595 2.31824 2.89607 3.25584 3.29287 3.36882 3.40327 3.72311 3.89440 4.04965 4.29980 4.37629 4.44308 4.47021 4.70972 4.77143 4.88613 5.17771 5.20003 5.33162 5.39291 5.48954 5.67121 5.69346 5.79181 6.12713 6.18887 6.33349 6.47650 6.60358 6.72809 6.96938 7.00285 7.63129 7.75560 7.96224 8.02554 8.31626 8.37014 8.63127 9.01163 9.58509 11.08569 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.036098 B = 0.002315 C = 0.002263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.483124 B =12091.929380 C =12368.839567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.177 3.823 3 N -0.293 5.293 4 N -0.269 5.269 5 C 0.154 3.846 6 C 0.233 3.767 7 N -0.749 5.749 8 C 0.705 3.295 9 O -0.589 6.589 10 N -0.739 5.739 11 C 0.135 3.865 12 C -0.121 4.121 13 C 0.023 3.977 14 C -0.522 4.522 15 H 0.056 0.944 16 C 0.056 3.944 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.273 1.273 20 H -0.284 1.284 21 H -0.284 1.284 22 N -0.467 5.467 23 C 0.068 3.932 24 H 0.087 0.913 25 H 0.078 0.922 26 H 0.097 0.903 27 H 0.085 0.915 28 H 0.103 0.897 29 H 0.397 0.603 30 H 0.394 0.606 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.019 0.981 36 H 0.020 0.980 37 H 0.261 0.739 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.693 7.337 -12.767 28.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.090 4.090 3 N -0.135 5.135 4 N -0.110 5.110 5 C -0.113 4.113 6 C 0.106 3.894 7 N -0.407 5.407 8 C 0.404 3.596 9 O -0.467 6.467 10 N -0.393 5.393 11 C 0.012 3.988 12 C -0.159 4.159 13 C -0.014 4.014 14 C -0.560 4.560 15 H 0.074 0.926 16 C -0.145 4.145 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.210 1.210 22 N -0.158 5.158 23 C -0.075 4.075 24 H 0.105 0.895 25 H 0.097 0.903 26 H 0.116 0.884 27 H 0.103 0.897 28 H 0.121 0.879 29 H 0.230 0.770 30 H 0.228 0.772 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -23.454 8.219 -13.641 28.350 hybrid contribution -0.711 -1.204 1.710 2.209 sum -24.166 7.015 -11.931 27.848 Atomic orbital electron populations 1.20249 0.83507 1.04754 1.04155 1.24944 0.97209 0.82804 1.04060 1.74339 0.96313 1.23821 1.18998 1.74330 1.12219 1.07824 1.16662 1.24709 0.86746 0.92734 1.07084 1.19203 0.88956 0.97088 0.84167 1.45033 1.29168 1.58954 1.07594 1.15889 0.80488 0.79094 0.84101 1.90941 1.55351 1.56993 1.43429 1.45387 1.30573 1.58067 1.05237 1.21548 0.84719 0.94429 0.98130 1.21895 1.01578 1.01230 0.91165 1.19035 0.90905 0.94735 0.96748 1.21239 1.09750 1.33054 0.91945 0.92614 1.25037 0.95980 0.95615 0.97902 1.69976 1.14184 1.34898 1.34177 0.86526 0.78045 0.77756 0.85594 1.19786 1.21012 1.20989 1.46055 1.06580 1.09069 1.54142 1.22210 1.03011 0.77585 1.04716 0.89461 0.90294 0.88447 0.89708 0.87877 0.76963 0.77237 0.91856 0.91764 0.92705 0.92798 0.96232 0.96179 0.92975 0.89488 0.88740 0.88542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.06 36.01 0.36 0.11 16 2 C 0.18 1.49 8.03 -154.99 -1.24 0.24 16 3 N -0.29 -3.65 12.21 32.80 0.40 -3.25 16 4 N -0.27 -3.55 12.21 32.80 0.40 -3.15 16 5 C 0.15 1.55 7.40 -154.99 -1.15 0.40 16 6 C 0.23 2.28 6.02 -5.19 -0.03 2.24 16 7 N -0.75 -7.94 5.55 -66.41 -0.37 -8.31 16 8 C 0.70 10.23 8.57 -86.92 -0.74 9.49 16 9 O -0.59 -10.94 16.34 5.29 0.09 -10.86 16 10 N -0.74 -10.35 5.56 -65.23 -0.36 -10.71 16 11 C 0.13 2.34 5.67 -4.04 -0.02 2.32 16 12 C -0.12 -2.32 5.27 -26.74 -0.14 -2.46 16 13 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 14 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 17 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 18 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 19 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 N -0.47 -3.46 3.15 -118.00 -0.37 -3.83 16 23 C 0.07 0.22 10.71 59.85 0.64 0.86 16 24 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 25 H 0.08 0.12 7.86 -51.93 -0.41 -0.28 16 26 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.08 0.72 7.22 -51.93 -0.37 0.34 16 28 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.40 3.51 8.48 -40.82 -0.35 3.16 16 30 H 0.39 4.43 8.49 -40.82 -0.35 4.09 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 39 H 0.09 0.09 7.81 -51.92 -0.41 -0.32 16 40 H 0.10 0.27 7.20 -51.93 -0.37 -0.10 16 LS Contribution 344.96 15.07 5.20 5.20 Total: -1.00 -36.54 344.96 -8.20 -44.75 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -6.02 Total: -0.61 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -2.88 Total: 0.35 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.43 Total: -55.23 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.09 Total: -10.86 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.54 -8.20 -44.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251629408.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.128 kcal (2) G-P(sol) polarization free energy of solvation -36.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds