Wall clock time and date at job start Tue Mar 31 2020 05:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47309 * 2 1 4 4 C 1.35492 * 126.97538 * 264.67966 * 3 2 1 5 5 N 1.30528 * 107.30462 * 180.26181 * 4 3 2 6 6 N 1.28595 * 109.67405 * 359.97438 * 5 4 3 7 7 C 1.30520 * 109.67181 * 0.02562 * 6 5 4 8 8 C 1.50701 * 126.34938 * 179.97438 * 7 6 5 9 9 N 1.46502 * 109.46547 * 270.04105 * 8 7 6 10 10 C 1.34780 * 119.99497 * 179.97438 * 9 8 7 11 11 O 1.21579 * 120.00244 * 0.02562 * 10 9 8 12 12 N 1.34780 * 119.99946 * 179.97438 * 10 9 8 13 13 C 1.46494 * 120.00128 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47355 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47228 * 180.02562 * 14 13 12 16 16 C 1.50701 * 109.47170 * 180.02562 * 15 14 13 17 17 H 1.08003 * 120.00115 * 0.02562 * 16 15 14 18 18 C 1.37874 * 120.00249 * 180.02562 * 16 15 14 19 19 N 1.31511 * 119.99990 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00237 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47230 * 89.99374 * 20 18 16 22 22 H 1.48491 * 109.47309 * 209.99884 * 20 18 16 23 23 H 1.48504 * 109.46918 * 329.99714 * 20 18 16 24 24 H 1.09000 * 109.47617 * 300.00957 * 1 2 3 25 25 H 1.09010 * 109.46857 * 60.00164 * 1 2 3 26 26 H 1.08998 * 109.47378 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47617 * 239.99043 * 2 1 3 28 28 H 1.09005 * 109.46433 * 119.99704 * 2 1 3 29 29 H 1.07996 * 126.35359 * 0.26134 * 4 3 2 30 30 H 1.09005 * 109.47105 * 30.03567 * 8 7 6 31 31 H 1.08997 * 109.47618 * 150.03858 * 8 7 6 32 32 H 0.96997 * 120.00766 * 359.97438 * 9 8 7 33 33 H 0.97002 * 119.99956 * 0.02562 * 12 10 9 34 34 H 1.08998 * 109.47546 * 300.00578 * 13 12 10 35 35 H 1.09000 * 109.47270 * 60.00421 * 13 12 10 36 36 H 1.08998 * 109.47222 * 300.00723 * 14 13 12 37 37 H 1.09004 * 109.46606 * 60.00487 * 14 13 12 38 38 H 1.09000 * 109.47032 * 300.00186 * 15 14 13 39 39 H 1.09000 * 109.47442 * 60.00341 * 15 14 13 40 40 H 0.96999 * 120.00057 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3846 2.1161 -1.0778 5 7 2.7613 3.2865 -0.6398 6 7 2.6517 3.3254 0.6409 7 6 2.2007 2.1813 1.0782 8 6 1.9326 1.8174 2.5158 9 7 3.1415 1.2373 3.1061 10 6 3.1369 0.8354 4.3926 11 8 2.1296 0.9539 5.0630 12 7 4.2488 0.3012 4.9356 13 6 4.2442 -0.1351 6.3341 14 6 5.6195 -0.6986 6.6972 15 6 5.6144 -1.1549 8.1576 16 6 6.9693 -1.7093 8.5154 17 1 7.7555 -1.7334 7.7753 18 6 7.2052 -2.1858 9.7875 19 7 6.2479 -2.1560 10.6888 20 14 8.8848 -2.8723 10.2312 21 1 9.7455 -1.7788 10.7494 22 1 8.7322 -3.9185 11.2739 23 1 9.5120 -3.4655 9.0229 24 1 -0.3634 0.5140 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8934 -0.5140 -0.8899 28 1 1.8932 -0.5138 0.8901 29 1 2.3681 1.7933 -2.1082 30 1 1.6509 2.7124 3.0707 31 1 1.1213 1.0910 2.5616 32 1 3.9450 1.1424 2.5712 33 1 5.0524 0.2063 4.4007 34 1 4.0180 0.7140 6.9790 35 1 3.4871 -0.9073 6.4713 36 1 5.8461 -1.5477 6.0524 37 1 6.3763 0.0739 6.5602 38 1 5.3876 -0.3060 8.8026 39 1 4.8577 -1.9274 8.2942 40 1 6.4138 -2.4916 11.5837 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251630493.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:46:57 Heat of formation + Delta-G solvation = 34.993624 kcal Electronic energy + Delta-G solvation = -20977.251540 eV Core-core repulsion = 17635.280086 eV Total energy + Delta-G solvation = -3341.971454 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.159 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.58896 -39.88709 -36.42845 -35.75546 -34.85720 -33.33962 -31.68128 -31.19752 -30.79452 -27.52299 -26.11063 -24.67212 -23.04585 -22.70580 -21.18942 -20.95088 -20.44246 -18.39149 -17.66294 -16.73362 -16.44220 -16.07602 -15.86363 -15.44590 -15.13686 -14.60866 -14.39633 -14.33043 -14.05706 -13.72048 -13.45093 -13.19811 -12.84695 -12.29484 -12.08904 -11.83156 -11.80661 -11.72556 -10.91442 -10.76501 -10.74645 -10.69797 -10.60605 -10.30947 -9.87636 -9.73862 -9.44894 -9.40021 -9.13603 -8.69499 -8.37986 -6.02642 -4.05757 1.21377 1.93562 2.35921 2.89205 3.25008 3.30274 3.36696 3.39218 3.73540 3.92164 4.10030 4.24601 4.29902 4.44242 4.52114 4.57010 4.84856 4.96449 5.12503 5.28168 5.33211 5.41295 5.48945 5.66752 5.67290 5.78956 6.12227 6.18526 6.34436 6.47299 6.60151 6.72351 6.96488 7.00106 7.62801 7.75471 7.96179 8.02040 8.30397 8.36977 8.62609 9.00933 9.58480 11.08650 Molecular weight = 281.16amu Principal moments of inertia in cm(-1) A = 0.033509 B = 0.002386 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.399253 B =11730.524548 C =11852.701303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.097 3.903 3 N -0.466 5.466 4 C 0.155 3.845 5 N -0.297 5.297 6 N -0.272 5.272 7 C 0.158 3.842 8 C 0.231 3.769 9 N -0.749 5.749 10 C 0.704 3.296 11 O -0.589 6.589 12 N -0.739 5.739 13 C 0.135 3.865 14 C -0.121 4.121 15 C 0.024 3.976 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.067 0.933 25 H 0.065 0.935 26 H 0.084 0.916 27 H 0.102 0.898 28 H 0.100 0.900 29 H 0.220 0.780 30 H 0.103 0.897 31 H 0.085 0.915 32 H 0.397 0.603 33 H 0.394 0.606 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.020 0.980 39 H 0.019 0.981 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.555 3.008 -25.488 27.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.026 4.026 3 N -0.157 5.157 4 C -0.132 4.132 5 N -0.136 5.136 6 N -0.113 5.113 7 C -0.110 4.110 8 C 0.104 3.896 9 N -0.408 5.408 10 C 0.404 3.596 11 O -0.467 6.467 12 N -0.393 5.393 13 C 0.012 3.988 14 C -0.159 4.159 15 C -0.014 4.014 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.721 3.279 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.086 0.914 25 H 0.084 0.916 26 H 0.102 0.898 27 H 0.120 0.880 28 H 0.119 0.881 29 H 0.236 0.764 30 H 0.121 0.879 31 H 0.103 0.897 32 H 0.230 0.770 33 H 0.228 0.772 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -11.051 4.459 -24.644 27.374 hybrid contribution 1.200 -1.870 -0.399 2.258 sum -9.851 2.589 -25.042 27.035 Atomic orbital electron populations 1.22188 0.93214 1.04010 1.03563 1.22043 0.96360 0.78464 1.05694 1.46481 1.48057 1.14187 1.06983 1.26528 1.01716 0.89801 0.95154 1.74338 1.18801 1.17246 1.03252 1.74350 1.15803 1.17795 1.03391 1.24797 1.04742 0.89168 0.92264 1.19230 0.87553 1.00297 0.82516 1.45039 1.15097 1.68743 1.11918 1.15892 0.84349 0.78466 0.80884 1.90940 1.32695 1.62002 1.61034 1.45384 1.12814 1.66272 1.14785 1.21548 0.99769 0.99189 0.78332 1.21896 0.93123 0.99466 1.01379 1.19027 0.97355 0.96627 0.88359 1.21200 0.97493 1.40748 0.96642 0.92672 1.25028 0.96889 0.95979 0.96570 1.69962 1.32311 1.46802 1.04181 0.86582 0.84362 0.78795 0.78179 1.20639 1.21209 1.19927 0.91357 0.91596 0.89759 0.87955 0.88133 0.76392 0.87940 0.89682 0.76952 0.77232 0.91773 0.91842 0.92800 0.92704 0.96201 0.96237 0.92911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.52 10.24 37.15 0.38 -0.14 16 2 C 0.10 0.32 6.54 -4.04 -0.03 0.29 16 3 N -0.47 -3.06 2.75 -115.30 -0.32 -3.38 16 4 C 0.16 1.11 12.74 -89.94 -1.15 -0.04 16 5 N -0.30 -3.44 12.21 29.69 0.36 -3.08 16 6 N -0.27 -3.42 12.21 32.80 0.40 -3.02 16 7 C 0.16 1.49 7.40 -154.99 -1.15 0.35 16 8 C 0.23 2.20 5.93 -5.19 -0.03 2.17 16 9 N -0.75 -7.75 5.55 -66.41 -0.37 -8.12 16 10 C 0.70 10.10 8.57 -86.91 -0.74 9.35 16 11 O -0.59 -10.84 16.34 5.30 0.09 -10.75 16 12 N -0.74 -10.23 5.56 -65.23 -0.36 -10.59 16 13 C 0.13 2.32 5.67 -4.04 -0.02 2.30 16 14 C -0.12 -2.31 5.27 -26.73 -0.14 -2.45 16 15 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 16 C -0.52 -14.48 9.11 -34.44 -0.31 -14.80 16 17 H 0.06 1.47 7.74 -52.48 -0.41 1.07 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -26.69 13.29 55.43 0.74 -25.95 16 20 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 H 0.07 0.30 7.80 -51.93 -0.41 -0.10 16 25 H 0.06 0.20 8.14 -51.92 -0.42 -0.22 16 26 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 27 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16 28 H 0.10 0.36 8.03 -51.93 -0.42 -0.06 16 29 H 0.22 0.56 8.06 -52.49 -0.42 0.14 16 30 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 31 H 0.09 0.72 7.60 -51.93 -0.39 0.32 16 32 H 0.40 3.38 8.48 -40.82 -0.35 3.04 16 33 H 0.39 4.37 8.49 -40.82 -0.35 4.02 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 346.58 15.07 5.22 5.22 Total: -1.00 -35.97 346.58 -8.79 -44.76 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -6.10 Total: -0.47 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -3.43 Total: -0.99 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.45 Total: -54.14 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.97 -8.79 -44.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251630493.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.751 kcal (2) G-P(sol) polarization free energy of solvation -35.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.757 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds