Wall clock time and date at job start Tue Mar 31 2020 05:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 109.46743 * 2 1 4 4 C 1.53001 * 109.46866 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47324 * 180.02562 * 4 3 2 6 6 H 1.09005 * 109.46726 * 304.99844 * 5 4 3 7 7 O 1.42903 * 109.47374 * 64.99465 * 5 4 3 8 8 C 1.52995 * 109.47363 * 184.99721 * 5 4 3 9 9 N 1.46498 * 109.47122 * 179.97438 * 8 5 4 10 10 C 1.39782 * 120.00148 * 179.97438 * 9 8 5 11 11 C 1.39409 * 119.91339 * 359.73176 * 10 9 8 12 12 C 1.38367 * 120.46444 * 179.75561 * 11 10 9 13 13 C 1.38003 * 120.29198 * 0.51967 * 12 11 10 14 14 F 1.35097 * 120.09467 * 179.72097 * 13 12 11 15 15 C 1.41016 * 119.81819 * 359.73879 * 13 12 11 16 16 C 1.41285 * 120.22547 * 179.97438 * 15 13 12 17 17 H 1.07996 * 120.00522 * 24.58654 * 16 15 13 18 18 C 1.39926 * 120.00020 * 204.58601 * 16 15 13 19 19 N 1.30862 * 119.99384 * 17.78573 * 18 16 15 20 20 Si 1.86799 * 120.00302 * 197.78678 * 18 16 15 21 21 H 1.48495 * 109.46972 * 90.00051 * 20 18 16 22 22 H 1.48493 * 109.46878 * 209.99897 * 20 18 16 23 23 H 1.48502 * 109.47009 * 330.00203 * 20 18 16 24 24 C 1.38164 * 119.91885 * 180.02562 * 10 9 8 25 25 H 1.09001 * 109.46970 * 299.99991 * 1 2 3 26 26 H 1.08995 * 109.46950 * 59.99553 * 1 2 3 27 27 H 1.08993 * 109.46614 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47291 * 240.00555 * 2 1 3 29 29 H 1.08993 * 109.47163 * 119.99703 * 2 1 3 30 30 H 1.09003 * 109.46947 * 299.99822 * 3 2 1 31 31 H 1.09001 * 109.47379 * 60.00260 * 3 2 1 32 32 H 1.09003 * 109.46929 * 299.99511 * 4 3 2 33 33 H 1.09001 * 109.47172 * 59.99811 * 4 3 2 34 34 H 0.96701 * 113.99803 * 60.00041 * 7 5 4 35 35 H 1.08995 * 109.47248 * 299.99865 * 8 5 4 36 36 H 1.09006 * 109.47094 * 60.00345 * 8 5 4 37 37 H 0.97005 * 120.00403 * 0.02562 * 9 8 5 38 38 H 1.07999 * 119.77209 * 359.97438 * 11 10 9 39 39 H 1.08004 * 119.85532 * 180.23477 * 12 11 10 40 40 H 0.97000 * 119.99086 * 180.02562 * 19 18 16 41 41 H 1.08000 * 120.14400 * 359.95972 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8851 0.0000 6 1 3.6450 3.4246 -0.8414 7 8 3.7024 3.5234 1.2215 8 6 5.6047 2.8870 -0.1263 9 7 6.0930 4.2683 -0.1263 10 6 7.4629 4.5254 -0.2317 11 6 8.3634 3.4658 -0.3312 12 6 9.7214 3.7073 -0.4411 13 6 10.2004 5.0016 -0.4428 14 9 11.5275 5.2326 -0.5447 15 6 9.3007 6.0823 -0.3374 16 6 9.7817 7.4108 -0.3377 17 1 10.7305 7.6415 -0.7990 18 6 9.0288 8.4276 0.2599 19 7 8.0778 8.1260 1.1068 20 14 9.3810 10.2154 -0.1512 21 1 8.5550 10.6279 -1.3142 22 1 9.0486 11.0671 1.0189 23 1 10.8195 10.3724 -0.4851 24 6 7.9215 5.8287 -0.2310 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3632 -1.0276 0.0005 28 1 1.8934 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9564 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.9337 0.9287 0.8892 33 1 3.9330 0.9289 -0.8908 34 1 4.0549 3.0958 2.0140 35 1 6.0397 2.3476 0.7150 36 1 5.8928 2.4003 -1.0581 37 1 5.4657 5.0045 -0.0524 38 1 7.9984 2.4494 -0.3259 39 1 10.4100 2.8792 -0.5214 40 1 7.5556 8.8309 1.5207 41 1 7.2239 6.6491 -0.1498 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252106632.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:28 Heat of formation + Delta-G solvation = -107.620220 kcal Electronic energy + Delta-G solvation = -21334.825158 eV Core-core repulsion = 17934.456791 eV Total energy + Delta-G solvation = -3400.368367 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -47.03181 -38.61430 -37.40603 -35.32807 -34.43836 -33.19944 -31.29766 -29.66981 -28.76484 -26.26123 -25.26086 -23.61127 -21.86540 -21.26472 -20.93520 -19.99364 -17.30999 -16.67559 -16.31732 -15.86294 -15.70837 -15.19435 -15.00189 -14.67639 -14.15143 -13.84794 -13.70904 -13.51273 -13.28689 -12.89238 -12.65213 -12.60155 -12.45280 -11.73133 -11.57342 -11.44300 -11.40411 -11.37659 -11.29153 -11.03711 -10.91203 -10.79421 -10.73191 -10.46723 -10.15599 -9.79039 -9.39399 -9.27412 -8.66817 -7.50807 -6.81568 -6.14634 -4.38449 2.76962 2.98314 3.08315 3.13111 3.23395 3.93927 4.00487 4.49110 4.59338 4.63107 4.71694 4.80365 4.98905 5.08040 5.15409 5.33638 5.50924 5.56264 5.58059 5.65553 5.67044 5.78411 5.87438 5.90134 6.00326 6.05482 6.16613 6.17630 6.20933 6.55525 6.90845 7.00942 7.18514 7.32110 7.60986 7.64722 7.71455 7.93235 8.09201 8.34790 8.65030 8.71466 8.81475 8.98581 10.16254 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.022467 B = 0.003365 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.956131 B = 8319.697158 C = 9388.228632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.116 4.116 4 C -0.149 4.149 5 C 0.096 3.904 6 H 0.100 0.900 7 O -0.557 6.557 8 C 0.105 3.895 9 N -0.753 5.753 10 C 0.213 3.787 11 C -0.282 4.282 12 C -0.091 4.091 13 C -0.064 4.064 14 F -0.169 7.169 15 C 0.118 3.882 16 C -0.454 4.454 17 H 0.082 0.918 18 C 0.077 3.923 19 N -0.785 5.785 20 Si 0.910 3.090 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.217 4.217 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.374 0.626 35 H 0.050 0.950 36 H 0.056 0.944 37 H 0.395 0.605 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.281 0.719 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.368 -10.752 -0.774 16.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.153 4.153 4 C -0.187 4.187 5 C 0.037 3.963 6 H 0.118 0.882 7 O -0.362 6.362 8 C -0.021 4.021 9 N -0.388 5.388 10 C 0.114 3.886 11 C -0.305 4.305 12 C -0.111 4.111 13 C -0.085 4.085 14 F -0.148 7.148 15 C 0.114 3.886 16 C -0.483 4.483 17 H 0.100 0.900 18 C -0.141 4.141 19 N -0.410 5.410 20 Si 0.735 3.265 21 H -0.192 1.192 22 H -0.203 1.203 23 H -0.185 1.185 24 C -0.241 4.241 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.222 0.778 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.230 0.770 38 H 0.112 0.888 39 H 0.116 0.884 40 H 0.092 0.908 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.797 -10.438 -1.027 16.546 hybrid contribution 0.449 0.576 0.281 0.782 sum -12.348 -9.862 -0.746 15.820 Atomic orbital electron populations 1.21776 0.96005 1.01395 1.01865 1.21550 0.95803 0.97111 1.01858 1.21547 0.94681 0.96441 1.02665 1.22243 0.96524 0.96930 1.03000 1.22178 0.93212 0.92888 0.88043 0.88203 1.86578 1.76587 1.57440 1.15561 1.21757 0.93277 0.86171 1.00900 1.44291 1.04654 1.05139 1.84669 1.17650 0.82299 0.93833 0.94833 1.19668 0.92054 0.95846 1.22899 1.20234 0.95142 0.94114 1.01609 1.17756 0.76759 0.93600 1.20369 1.91240 1.32619 1.95651 1.95282 1.17325 0.90692 0.91864 0.88748 1.19508 1.05418 0.91555 1.31847 0.89994 1.25909 0.93780 1.01795 0.92662 1.69865 1.16771 1.35591 1.18726 0.86271 0.80195 0.81164 0.78909 1.19208 1.20266 1.18495 1.20541 0.95170 0.93181 1.15181 0.92739 0.92783 0.92955 0.92174 0.92158 0.92073 0.91290 0.91453 0.90878 0.77842 0.93139 0.92585 0.77050 0.88849 0.88394 0.90843 0.85763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.13 -0.94 5.93 -26.73 -0.16 -1.10 16 3 C -0.12 -0.99 5.11 -26.73 -0.14 -1.13 16 4 C -0.15 -1.32 4.89 -26.73 -0.13 -1.45 16 5 C 0.10 1.09 3.05 -26.73 -0.08 1.01 16 6 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 7 O -0.56 -6.89 12.62 -35.23 -0.44 -7.34 16 8 C 0.11 1.48 4.57 -4.05 -0.02 1.46 16 9 N -0.75 -13.86 5.63 -58.67 -0.33 -14.19 16 10 C 0.21 4.85 6.64 -83.82 -0.56 4.29 16 11 C -0.28 -6.24 9.32 -39.10 -0.36 -6.61 16 12 C -0.09 -2.14 10.00 -39.62 -0.40 -2.54 16 13 C -0.06 -1.69 7.31 -38.62 -0.28 -1.97 16 14 F -0.17 -4.45 16.71 2.25 0.04 -4.41 16 15 C 0.12 3.25 5.58 -106.78 -0.60 2.65 16 16 C -0.45 -12.49 8.78 -37.79 -0.33 -12.82 16 17 H 0.08 2.24 7.73 -52.49 -0.41 1.83 16 18 C 0.08 1.97 5.14 -17.33 -0.09 1.88 16 19 N -0.78 -20.28 10.96 55.55 0.61 -19.67 16 20 Si 0.91 18.99 29.60 -169.99 -5.03 13.95 16 21 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 22 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 24 C -0.22 -5.59 8.52 -38.70 -0.33 -5.92 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.64 7.82 -51.93 -0.41 0.24 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.37 3.68 9.05 45.56 0.41 4.09 16 35 H 0.05 0.72 7.93 -51.93 -0.41 0.30 16 36 H 0.06 0.79 7.95 -51.93 -0.41 0.37 16 37 H 0.40 7.23 8.35 -40.82 -0.34 6.89 16 38 H 0.09 1.82 6.70 -52.49 -0.35 1.47 16 39 H 0.10 2.03 8.06 -52.48 -0.42 1.61 16 40 H 0.28 6.58 8.30 -40.82 -0.34 6.25 16 41 H 0.12 3.29 6.16 -52.49 -0.32 2.97 16 LS Contribution 342.91 15.07 5.17 5.17 Total: -1.00 -29.00 342.91 -8.70 -37.70 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -5.60 Total: 11.74 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -3.10 Total: -22.95 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: 0.28 Total: -33.86 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.44 Total: -7.34 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.04 Total: -4.41 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.95 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.00 -8.70 -37.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252106632.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.921 kcal (2) G-P(sol) polarization free energy of solvation -29.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds