Wall clock time and date at job start Tue Mar 31 2020 05:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46748 * 2 1 4 4 N 1.46900 * 109.47231 * 179.53212 * 3 2 1 5 5 C 1.46896 * 111.00121 * 288.00719 * 4 3 2 6 6 C 1.50703 * 109.47101 * 160.35470 * 5 4 3 7 7 H 1.07999 * 120.00240 * 4.66024 * 6 5 4 8 8 C 1.37880 * 119.99805 * 184.65315 * 6 5 4 9 9 N 1.31512 * 120.00387 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99746 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47144 * 90.00445 * 10 8 6 12 12 H 1.48502 * 109.47234 * 210.00269 * 10 8 6 13 13 H 1.48497 * 109.47578 * 330.00508 * 10 8 6 14 14 C 1.46904 * 111.00323 * 164.05059 * 4 3 2 15 15 C 1.53000 * 109.47085 * 293.95983 * 14 4 3 16 16 H 1.09004 * 109.47457 * 59.99293 * 15 14 4 17 17 O 1.42906 * 109.46772 * 299.99853 * 15 14 4 18 18 C 1.50695 * 109.47134 * 180.02562 * 15 14 4 19 19 C 1.38245 * 119.97062 * 264.99722 * 18 15 14 20 20 C 1.38205 * 120.02544 * 179.97438 * 19 18 15 21 21 C 1.38461 * 119.97130 * 0.02562 * 20 19 18 22 22 F 1.35103 * 120.02072 * 179.97438 * 21 20 19 23 23 C 1.38454 * 119.94832 * 0.25116 * 21 20 19 24 24 C 1.38196 * 119.97626 * 359.47431 * 23 21 20 25 25 H 1.09001 * 109.47608 * 299.99640 * 1 2 3 26 26 H 1.09004 * 109.47355 * 60.00524 * 1 2 3 27 27 H 1.09004 * 109.46889 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47608 * 240.00360 * 2 1 3 29 29 H 1.09004 * 109.47355 * 119.99476 * 2 1 3 30 30 H 1.09004 * 109.47041 * 59.53468 * 3 2 1 31 31 H 1.08997 * 109.47773 * 299.53481 * 3 2 1 32 32 H 1.08998 * 109.47247 * 280.35528 * 5 4 3 33 33 H 1.09002 * 109.47271 * 40.35777 * 5 4 3 34 34 H 0.96996 * 120.00153 * 179.97438 * 9 8 6 35 35 H 1.09000 * 109.47096 * 173.95464 * 14 4 3 36 36 H 1.09002 * 109.46891 * 53.95429 * 14 4 3 37 37 H 0.96695 * 113.99970 * 299.99656 * 17 15 14 38 38 H 1.08004 * 119.99168 * 0.02562 * 19 18 15 39 39 H 1.07998 * 120.01097 * 180.02562 * 20 19 18 40 40 H 1.08000 * 120.01210 * 179.74450 * 23 21 20 41 41 H 1.08002 * 119.98856 * 180.29892 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5089 1.4427 0.0113 5 6 4.0253 1.0223 1.3207 6 6 5.4558 0.5710 1.1752 7 1 5.9574 0.6645 0.2233 8 6 6.1242 0.0389 2.2574 9 7 5.5134 -0.0752 3.4164 10 14 7.8971 -0.5211 2.0768 11 1 8.8077 0.6105 2.3861 12 1 8.1610 -1.6400 3.0169 13 1 8.1323 -0.9790 0.6839 14 6 4.0382 2.7603 -0.3651 15 6 3.6853 3.0538 -1.8246 16 1 2.6019 3.0496 -1.9445 17 8 4.2612 2.0513 -2.6647 18 6 4.2288 4.4051 -2.2109 19 6 3.4187 5.5228 -2.1349 20 6 3.9162 6.7628 -2.4884 21 6 5.2263 6.8853 -2.9193 22 9 5.7135 8.0969 -3.2656 23 6 6.0349 5.7644 -3.0005 24 6 5.5370 4.5263 -2.6411 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6697 1.9587 0.8858 31 1 1.6834 1.9540 -0.8941 32 1 3.9776 1.8603 2.0161 33 1 3.4216 0.1988 1.7021 34 1 5.9836 -0.4499 4.1776 35 1 5.1216 2.7644 -0.2452 36 1 3.5988 3.5249 0.2757 37 1 5.2251 1.9981 -2.6093 38 1 2.3969 5.4271 -1.7983 39 1 3.2833 7.6358 -2.4285 40 1 7.0557 5.8581 -3.3404 41 1 6.1691 3.6525 -2.6997 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252846679.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:39 Heat of formation + Delta-G solvation = -76.854334 kcal Electronic energy + Delta-G solvation = -22018.976071 eV Core-core repulsion = 18619.941814 eV Total energy + Delta-G solvation = -3399.034258 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.98253 -39.65912 -37.52411 -35.80666 -33.06482 -32.26041 -31.34837 -31.00862 -28.03133 -26.90782 -24.71182 -23.17920 -22.98803 -21.54655 -21.00243 -19.66001 -17.94855 -16.86917 -16.56452 -16.35148 -15.68448 -15.43672 -14.92967 -14.62230 -14.49545 -14.31445 -13.87620 -13.68846 -13.53485 -13.04552 -12.91552 -12.60033 -12.42041 -12.22588 -11.84735 -11.38504 -11.33364 -11.22805 -11.12061 -10.80140 -10.78031 -10.56227 -10.39952 -10.10925 -9.90740 -9.52762 -9.21841 -9.20502 -8.59489 -8.41034 -7.22455 -6.02702 -4.03727 1.02541 1.12583 3.30320 3.37299 3.40863 3.46077 4.14886 4.39383 4.53253 4.59579 4.72992 4.76182 5.09798 5.14414 5.18008 5.32918 5.43061 5.51662 5.53094 5.63351 5.77028 5.85275 5.86359 5.98413 6.00208 6.05636 6.13134 6.19988 6.30862 6.36873 6.39027 6.57241 6.72126 6.77199 6.88089 7.22262 7.32798 7.80125 7.94450 8.13441 8.20277 8.54235 9.03251 9.60172 11.07887 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012756 B = 0.005015 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.458777 B = 5582.277762 C = 7189.437193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C 0.055 3.945 4 N -0.524 5.524 5 C 0.190 3.810 6 C -0.502 4.502 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.038 3.962 15 C 0.150 3.850 16 H 0.103 0.897 17 O -0.539 6.539 18 C -0.115 4.115 19 C -0.084 4.084 20 C -0.152 4.152 21 C 0.089 3.911 22 F -0.144 7.144 23 C -0.149 4.149 24 C -0.080 4.080 25 H 0.048 0.952 26 H 0.047 0.953 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.019 0.981 31 H 0.057 0.943 32 H -0.014 1.014 33 H 0.038 0.962 34 H 0.261 0.739 35 H 0.085 0.915 36 H 0.028 0.972 37 H 0.372 0.628 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.804 10.126 -11.169 15.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.073 4.073 4 N -0.248 5.248 5 C 0.066 3.934 6 C -0.541 4.541 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.209 1.209 12 H -0.213 1.213 13 H -0.197 1.197 14 C -0.091 4.091 15 C 0.090 3.910 16 H 0.120 0.880 17 O -0.344 6.344 18 C -0.116 4.116 19 C -0.102 4.102 20 C -0.171 4.171 21 C 0.070 3.930 22 F -0.123 7.123 23 C -0.168 4.168 24 C -0.098 4.098 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.037 0.963 31 H 0.075 0.925 32 H 0.004 0.996 33 H 0.056 0.944 34 H 0.070 0.930 35 H 0.104 0.896 36 H 0.046 0.954 37 H 0.220 0.780 38 H 0.150 0.850 39 H 0.151 0.849 40 H 0.153 0.847 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.215 9.653 -11.489 15.886 hybrid contribution 1.388 0.734 0.883 1.801 sum -3.828 10.387 -10.606 15.330 Atomic orbital electron populations 1.21745 0.96826 1.01042 1.00959 1.21482 0.93816 0.97147 1.03185 1.22088 0.89883 0.96649 0.98691 1.62053 1.04894 1.24123 1.33771 1.19805 0.95861 0.94984 0.82784 1.21139 0.96529 1.40222 0.96167 0.91998 1.24983 0.98321 0.96060 0.95278 1.69949 1.36985 1.45986 1.01017 0.86541 0.84846 0.78265 0.78015 1.20867 1.21302 1.19746 1.22632 1.01983 0.91257 0.93180 1.20920 0.97691 0.82078 0.90316 0.87971 1.86593 1.25459 1.56957 1.65438 1.20864 0.94518 0.97135 0.99102 1.20861 1.00065 0.91097 0.98180 1.21100 0.94283 0.99116 1.02629 1.17723 0.93241 0.80438 1.01630 1.91485 1.88302 1.42512 1.89958 1.21112 1.00552 0.91808 1.03351 1.20825 0.94952 0.97050 0.96975 0.93285 0.93347 0.93080 0.91441 0.91354 0.96254 0.92466 0.99601 0.94431 0.92972 0.89626 0.95425 0.78029 0.84986 0.84854 0.84733 0.84768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.16 0.37 -1.62 16 2 C -0.12 -2.01 6.01 -26.73 -0.16 -2.17 16 3 C 0.06 0.97 4.83 -3.82 -0.02 0.96 16 4 N -0.52 -10.73 4.25 -236.07 -1.00 -11.74 16 5 C 0.19 4.81 4.59 -4.98 -0.02 4.78 16 6 C -0.50 -13.66 8.61 -34.44 -0.30 -13.96 16 7 H 0.06 1.65 7.66 -52.49 -0.40 1.25 16 8 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 9 N -0.90 -26.38 13.29 55.43 0.74 -25.64 16 10 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 14 C 0.04 0.68 4.43 -3.82 -0.02 0.66 16 15 C 0.15 2.16 3.12 -27.89 -0.09 2.07 16 16 H 0.10 1.43 6.19 -51.93 -0.32 1.10 16 17 O -0.54 -8.34 13.00 -35.23 -0.46 -8.80 16 18 C -0.12 -1.46 5.00 -104.62 -0.52 -1.98 16 19 C -0.08 -0.95 9.68 -39.59 -0.38 -1.33 16 20 C -0.15 -1.68 10.03 -39.51 -0.40 -2.08 16 21 C 0.09 1.06 7.30 -39.42 -0.29 0.77 16 22 F -0.14 -1.78 17.27 2.25 0.04 -1.74 16 23 C -0.15 -1.71 10.03 -39.52 -0.40 -2.10 16 24 C -0.08 -0.95 9.32 -39.60 -0.37 -1.32 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.07 1.32 6.53 -51.93 -0.34 0.98 16 30 H 0.02 0.35 8.05 -51.93 -0.42 -0.07 16 31 H 0.06 0.89 5.94 -51.93 -0.31 0.58 16 32 H -0.01 -0.37 8.00 -51.93 -0.42 -0.79 16 33 H 0.04 1.02 6.24 -51.93 -0.32 0.70 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.09 1.64 7.32 -51.93 -0.38 1.26 16 36 H 0.03 0.49 8.12 -51.93 -0.42 0.07 16 37 H 0.37 4.89 7.39 45.56 0.34 5.23 16 38 H 0.13 1.24 8.06 -52.48 -0.42 0.82 16 39 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 40 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 41 H 0.13 1.39 6.61 -52.49 -0.35 1.04 16 LS Contribution 340.07 15.07 5.12 5.12 Total: -1.00 -30.27 340.07 -8.70 -38.97 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -5.43 Total: 3.47 kcal Atomic # 6 Polarization: -13.21 SS G_CDS: -2.69 Total: -15.90 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: -0.27 Total: -37.38 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: -0.46 Total: -8.80 kcal Atomic # 9 Polarization: -1.78 SS G_CDS: 0.04 Total: -1.74 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.27 -8.70 -38.97 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252846679.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.882 kcal (2) G-P(sol) polarization free energy of solvation -30.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds