Wall clock time and date at job start Tue Mar 31 2020 05:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47118 * 2 1 4 4 N 1.46897 * 109.47053 * 182.25271 * 3 2 1 5 5 C 1.46904 * 110.99704 * 200.22706 * 4 3 2 6 6 C 1.50699 * 109.47519 * 66.04283 * 5 4 3 7 7 H 1.08003 * 119.99607 * 359.97438 * 6 5 4 8 8 C 1.37872 * 120.00297 * 180.02562 * 6 5 4 9 9 N 1.31515 * 119.99917 * 359.97438 * 8 6 5 10 10 Si 1.86802 * 120.00169 * 180.02562 * 8 6 5 11 11 H 1.48494 * 109.46788 * 359.97438 * 10 8 6 12 12 H 1.48500 * 109.47040 * 119.99573 * 10 8 6 13 13 H 1.48493 * 109.46850 * 239.99611 * 10 8 6 14 14 C 1.46892 * 111.00304 * 76.26938 * 4 3 2 15 15 C 1.52994 * 109.47246 * 200.14272 * 14 4 3 16 16 H 1.08996 * 109.47491 * 301.63830 * 15 14 4 17 17 O 1.42904 * 109.47153 * 61.63797 * 15 14 4 18 18 C 1.50705 * 109.47212 * 181.63210 * 15 14 4 19 19 C 1.38247 * 119.97063 * 100.00321 * 18 15 14 20 20 C 1.38197 * 120.02465 * 180.02562 * 19 18 15 21 21 C 1.38467 * 119.97126 * 0.23660 * 20 19 18 22 22 F 1.35099 * 120.02350 * 179.72827 * 21 20 19 23 23 C 1.38456 * 119.94893 * 359.48574 * 21 20 19 24 24 C 1.38194 * 119.97683 * 0.53659 * 23 21 20 25 25 H 1.09005 * 109.47165 * 60.00328 * 1 2 3 26 26 H 1.09002 * 109.46916 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47395 * 300.00058 * 1 2 3 28 28 H 1.09001 * 109.47395 * 239.99942 * 2 1 3 29 29 H 1.08999 * 109.46841 * 119.99373 * 2 1 3 30 30 H 1.08997 * 109.46786 * 62.24422 * 3 2 1 31 31 H 1.09004 * 109.46461 * 302.25220 * 3 2 1 32 32 H 1.08997 * 109.46914 * 186.04541 * 5 4 3 33 33 H 1.09006 * 109.46849 * 306.04637 * 5 4 3 34 34 H 0.97001 * 120.00654 * 180.02562 * 9 8 6 35 35 H 1.09007 * 109.47134 * 80.14545 * 14 4 3 36 36 H 1.09002 * 109.47466 * 320.14929 * 14 4 3 37 37 H 0.96698 * 114.00283 * 63.63941 * 17 15 14 38 38 H 1.07997 * 119.99110 * 0.02562 * 19 18 15 39 39 H 1.07999 * 120.01805 * 179.97438 * 20 19 18 40 40 H 1.07999 * 120.01413 * 180.25621 * 23 21 20 41 41 H 1.07995 * 119.99320 * 179.74554 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 3.5080 1.4429 -0.0544 5 6 4.0519 2.7236 0.4167 6 6 3.7475 2.8897 1.8833 7 1 3.2038 2.1209 2.4123 8 6 4.1619 4.0235 2.5494 9 7 4.8235 4.9598 1.9050 10 14 3.7851 4.2290 4.3674 11 1 3.0357 3.0432 4.8546 12 1 5.0559 4.3575 5.1248 13 1 2.9638 5.4498 4.5677 14 6 3.9847 1.1350 -1.4093 15 6 5.4353 0.6534 -1.3425 16 1 6.0530 1.4235 -0.8805 17 8 5.5046 -0.5431 -0.5641 18 6 5.9372 0.3757 -2.7361 19 6 6.7261 1.3076 -3.3845 20 6 7.1865 1.0544 -4.6627 21 6 6.8533 -0.1312 -5.2957 22 9 7.2982 -0.3774 -6.5473 23 6 6.0678 -1.0662 -4.6431 24 6 5.6082 -0.8106 -3.3652 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 1.7099 1.9446 0.9094 31 1 1.6440 1.9678 -0.8692 32 1 5.1313 2.7374 0.2659 33 1 3.5962 3.5400 -0.1436 34 1 5.1154 5.7574 2.3736 35 1 3.9276 2.0313 -2.0270 36 1 3.3620 0.3535 -1.8448 37 1 5.0227 -1.2893 -0.9462 38 1 6.9828 2.2339 -2.8920 39 1 7.8025 1.7826 -5.1692 40 1 5.8107 -1.9930 -5.1343 41 1 4.9922 -1.5379 -2.8575 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252846680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:42 Heat of formation + Delta-G solvation = -77.913529 kcal Electronic energy + Delta-G solvation = -21983.016876 eV Core-core repulsion = 18583.936689 eV Total energy + Delta-G solvation = -3399.080188 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.99451 -39.64479 -37.48554 -35.82767 -33.11863 -32.24713 -31.32599 -31.03289 -28.07720 -26.84920 -24.62016 -23.37326 -22.95648 -21.48462 -20.88233 -19.79750 -17.94183 -16.87097 -16.59141 -16.29822 -15.69824 -15.50147 -14.84860 -14.57778 -14.50628 -14.35740 -13.78227 -13.63392 -13.49434 -13.07347 -12.96026 -12.75435 -12.38287 -12.06352 -11.90555 -11.53838 -11.36243 -11.19683 -11.03018 -10.87202 -10.81071 -10.63962 -10.35100 -10.04809 -9.76737 -9.66286 -9.22102 -9.15626 -8.60875 -8.43134 -7.21247 -6.02583 -4.02754 1.01954 1.12055 3.31733 3.39393 3.44342 3.46019 4.13916 4.40437 4.53909 4.59505 4.74580 4.77900 5.09967 5.15168 5.25973 5.33190 5.39681 5.46653 5.54388 5.64770 5.75310 5.79413 5.91408 5.98248 6.00042 6.07701 6.12431 6.14981 6.25062 6.26868 6.42204 6.58058 6.72588 6.77251 6.82911 7.26575 7.32932 7.80905 7.97521 8.09595 8.21493 8.55287 9.05205 9.61366 11.08520 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.017436 B = 0.004271 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.496090 B = 6554.973601 C = 7669.169289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.061 3.939 4 N -0.525 5.525 5 C 0.192 3.808 6 C -0.503 4.503 7 H 0.064 0.936 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.896 3.104 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.286 1.286 14 C 0.031 3.969 15 C 0.154 3.846 16 H 0.114 0.886 17 O -0.533 6.533 18 C -0.115 4.115 19 C -0.079 4.079 20 C -0.151 4.151 21 C 0.088 3.912 22 F -0.144 7.144 23 C -0.152 4.152 24 C -0.086 4.086 25 H 0.047 0.953 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.015 0.985 32 H 0.030 0.970 33 H -0.011 1.011 34 H 0.260 0.740 35 H 0.034 0.966 36 H 0.063 0.937 37 H 0.361 0.639 38 H 0.137 0.863 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.457 -10.641 -12.397 16.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C -0.067 4.067 4 N -0.249 5.249 5 C 0.067 3.933 6 C -0.541 4.541 7 H 0.083 0.917 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.724 3.276 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.212 1.212 14 C -0.099 4.099 15 C 0.094 3.906 16 H 0.131 0.869 17 O -0.337 6.337 18 C -0.116 4.116 19 C -0.097 4.097 20 C -0.170 4.170 21 C 0.069 3.931 22 F -0.123 7.123 23 C -0.171 4.171 24 C -0.104 4.104 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.086 0.914 30 H 0.105 0.895 31 H 0.034 0.966 32 H 0.048 0.952 33 H 0.006 0.994 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.082 0.918 37 H 0.207 0.793 38 H 0.155 0.845 39 H 0.153 0.847 40 H 0.151 0.849 41 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.175 -10.448 -11.699 15.687 hybrid contribution -0.629 0.605 -0.338 0.936 sum -0.454 -9.844 -12.038 15.557 Atomic orbital electron populations 1.21744 0.96693 1.00771 1.01547 1.21524 0.94231 0.97976 1.01722 1.22043 0.88406 0.95175 1.01069 1.61994 1.07123 1.36802 1.19005 1.19773 0.95172 0.82820 0.95530 1.21187 1.35398 1.03379 0.94154 0.91747 1.24972 0.95346 0.95867 0.98411 1.69959 1.38878 1.08919 1.36236 0.86469 0.78042 0.77912 0.85190 1.19631 1.21018 1.21208 1.22688 0.95123 0.99582 0.92459 1.20895 0.96270 0.88212 0.85232 0.86875 1.86745 1.75930 1.20543 1.50438 1.20917 0.97840 0.94697 0.98172 1.21002 0.95632 0.99431 0.93632 1.21155 1.02831 0.96682 0.96287 1.17728 0.98942 0.95891 0.80513 1.91482 1.87791 1.94575 1.38421 1.21065 1.00112 0.99770 0.96122 1.20764 0.98917 0.96928 0.93770 0.93389 0.93329 0.92683 0.93228 0.91380 0.89533 0.96637 0.95164 0.99367 0.93037 0.94820 0.91840 0.79320 0.84475 0.84720 0.84857 0.85113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.91 37.16 0.37 -1.55 16 2 C -0.12 -1.76 6.07 -26.73 -0.16 -1.92 16 3 C 0.06 1.15 4.79 -3.82 -0.02 1.13 16 4 N -0.53 -10.79 4.25 -236.07 -1.00 -11.79 16 5 C 0.19 4.85 4.54 -4.97 -0.02 4.83 16 6 C -0.50 -13.91 8.23 -34.44 -0.28 -14.19 16 7 H 0.06 1.78 7.32 -52.48 -0.38 1.40 16 8 C 0.05 1.54 5.46 -17.82 -0.10 1.45 16 9 N -0.90 -26.41 13.29 55.43 0.74 -25.68 16 10 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 14 C 0.03 0.51 4.46 -3.83 -0.02 0.50 16 15 C 0.15 2.42 3.29 -27.88 -0.09 2.33 16 16 H 0.11 2.06 6.63 -51.93 -0.34 1.72 16 17 O -0.53 -8.56 13.12 -35.23 -0.46 -9.02 16 18 C -0.12 -1.50 4.97 -104.61 -0.52 -2.02 16 19 C -0.08 -0.98 9.67 -39.59 -0.38 -1.37 16 20 C -0.15 -1.74 10.03 -39.51 -0.40 -2.13 16 21 C 0.09 1.04 7.30 -39.42 -0.29 0.75 16 22 F -0.14 -1.75 17.27 2.25 0.04 -1.71 16 23 C -0.15 -1.62 10.03 -39.52 -0.40 -2.02 16 24 C -0.09 -0.94 9.30 -39.59 -0.37 -1.31 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.68 6.74 -51.93 -0.35 0.33 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 30 H 0.09 1.83 6.58 -51.93 -0.34 1.49 16 31 H 0.02 0.28 7.99 -51.93 -0.41 -0.13 16 32 H 0.03 0.81 6.64 -51.93 -0.34 0.47 16 33 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.89 16 35 H 0.03 0.59 7.99 -51.93 -0.42 0.17 16 36 H 0.06 0.92 6.50 -51.93 -0.34 0.59 16 37 H 0.36 4.27 7.38 45.56 0.34 4.60 16 38 H 0.14 1.62 8.04 -52.49 -0.42 1.20 16 39 H 0.13 1.30 8.06 -52.49 -0.42 0.87 16 40 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.13 1.14 6.73 -52.49 -0.35 0.78 16 LS Contribution 340.46 15.07 5.13 5.13 Total: -1.00 -30.58 340.46 -8.72 -39.30 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -5.46 Total: 2.75 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: -2.68 Total: -15.53 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: -0.27 Total: -37.47 kcal Atomic # 8 Polarization: -8.56 SS G_CDS: -0.46 Total: -9.02 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -30.58 -8.72 -39.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252846680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.612 kcal (2) G-P(sol) polarization free energy of solvation -30.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds