Wall clock time and date at job start Tue Mar 31 2020 05:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47031 * 2 1 4 4 C 1.52995 * 109.46762 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47229 * 179.97438 * 4 3 2 6 6 C 1.36946 * 119.99921 * 270.88525 * 5 4 3 7 7 H 1.07998 * 119.99772 * 326.01730 * 6 5 4 8 8 C 1.38807 * 119.99807 * 146.00976 * 6 5 4 9 9 N 1.31617 * 120.00567 * 336.66701 * 8 6 5 10 10 Si 1.86804 * 119.99912 * 156.66689 * 8 6 5 11 11 H 1.48505 * 109.47139 * 59.99835 * 10 8 6 12 12 H 1.48497 * 109.47174 * 180.02562 * 10 8 6 13 13 H 1.48504 * 109.46887 * 300.00236 * 10 8 6 14 14 C 1.46500 * 120.00198 * 90.88356 * 5 4 3 15 15 C 1.53000 * 109.47005 * 90.00626 * 14 5 4 16 16 H 1.08994 * 109.47651 * 59.99729 * 15 14 5 17 17 O 1.42901 * 109.47035 * 299.99734 * 15 14 5 18 18 C 1.50704 * 109.47213 * 180.02562 * 15 14 5 19 19 C 1.38237 * 119.97189 * 264.99651 * 18 15 14 20 20 C 1.38206 * 120.02409 * 179.97438 * 19 18 15 21 21 C 1.38462 * 119.97263 * 0.02562 * 20 19 18 22 22 F 1.35101 * 120.02293 * 179.97438 * 21 20 19 23 23 C 1.38455 * 119.94850 * 0.24850 * 21 20 19 24 24 C 1.38202 * 119.97554 * 359.47292 * 23 21 20 25 25 H 1.08999 * 109.47300 * 59.99966 * 1 2 3 26 26 H 1.08997 * 109.47381 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47104 * 300.00613 * 1 2 3 28 28 H 1.09000 * 109.47104 * 239.99387 * 2 1 3 29 29 H 1.09000 * 109.46445 * 119.99705 * 2 1 3 30 30 H 1.08997 * 109.47035 * 60.00095 * 3 2 1 31 31 H 1.08997 * 109.46804 * 299.99437 * 3 2 1 32 32 H 1.09000 * 109.47566 * 59.99889 * 4 3 2 33 33 H 1.08999 * 109.47484 * 299.99981 * 4 3 2 34 34 H 0.97003 * 120.00622 * 179.97438 * 9 8 6 35 35 H 1.08994 * 109.47138 * 330.00041 * 14 5 4 36 36 H 1.09004 * 109.46924 * 210.00170 * 14 5 4 37 37 H 0.96701 * 114.00104 * 300.00745 * 17 15 14 38 38 H 1.08000 * 119.99225 * 0.02562 * 19 18 15 39 39 H 1.07994 * 120.00939 * 180.02562 * 20 19 18 40 40 H 1.07996 * 120.01558 * 179.74468 * 23 21 20 41 41 H 1.07997 * 119.98955 * 180.29108 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4424 0.0006 5 7 4.0584 2.8236 0.0000 6 6 4.2699 3.4745 -1.1861 7 1 4.6167 2.9254 -2.0490 8 6 4.0384 4.8400 -1.2793 9 7 3.2137 5.4267 -0.4379 10 14 4.8973 5.8450 -2.5990 11 1 4.5232 5.3254 -3.9390 12 1 4.4841 7.2669 -2.4859 13 1 6.3680 5.7417 -2.4211 14 6 4.3205 3.5085 1.2683 15 6 5.7716 3.2661 1.6883 16 1 6.4416 3.6536 0.9209 17 8 5.9929 1.8636 1.8497 18 6 6.0412 3.9701 2.9933 19 6 6.5989 5.2349 2.9933 20 6 6.8461 5.8817 4.1894 21 6 6.5353 5.2621 5.3879 22 9 6.7769 5.8932 6.5578 23 6 5.9819 3.9930 5.3868 24 6 5.7303 3.3505 4.1893 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8934 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9562 -0.8900 32 1 3.9337 0.9285 -0.8891 33 1 3.9329 0.9287 0.8908 34 1 3.0522 6.3810 -0.5028 35 1 3.6505 3.1210 2.0357 36 1 4.1518 4.5783 1.1451 37 1 5.4294 1.4509 2.5186 38 1 6.8409 5.7183 2.0582 39 1 7.2815 6.8700 4.1891 40 1 5.7428 3.5070 6.3211 41 1 5.2943 2.3624 4.1881 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252846943.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:38 Heat of formation + Delta-G solvation = -68.705407 kcal Electronic energy + Delta-G solvation = -22265.198346 eV Core-core repulsion = 18866.517452 eV Total energy + Delta-G solvation = -3398.680894 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.76074 -39.28185 -36.92257 -35.43472 -33.84865 -31.29815 -31.10169 -30.79313 -28.34974 -26.77905 -24.30512 -23.10166 -22.80810 -21.13397 -20.61307 -19.93572 -17.72875 -17.03267 -16.27253 -16.07854 -15.45642 -14.97537 -14.79861 -14.74915 -14.23685 -13.92574 -13.52375 -13.41600 -13.34613 -13.21859 -12.70651 -12.53965 -12.20738 -12.02405 -11.73818 -11.40911 -11.04131 -10.90792 -10.81064 -10.64403 -10.54032 -10.43742 -10.24921 -10.10415 -9.92438 -9.67238 -9.40061 -8.94773 -8.54911 -8.32042 -6.60990 -5.82234 -3.34822 1.32273 1.39762 3.33845 3.40556 3.42988 3.76026 4.39817 4.44896 4.86353 4.96284 5.00978 5.05879 5.26228 5.41681 5.44974 5.46125 5.56288 5.66717 5.78724 5.93764 6.07227 6.15121 6.19093 6.21361 6.24122 6.26593 6.39903 6.43708 6.45225 6.48008 6.64616 6.69425 6.76611 7.01460 7.08730 7.09900 7.29031 7.51560 7.79206 8.20708 8.45638 9.14010 9.78283 10.34911 11.16619 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.012432 B = 0.005704 C = 0.004311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.778217 B = 4907.984591 C = 6492.806313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.135 4.135 4 C 0.153 3.847 5 N -0.574 5.574 6 C -0.254 4.254 7 H 0.062 0.938 8 C 0.007 3.993 9 N -0.886 5.886 10 Si 0.893 3.107 11 H -0.281 1.281 12 H -0.291 1.291 13 H -0.283 1.283 14 C 0.123 3.877 15 C 0.119 3.881 16 H 0.106 0.894 17 O -0.552 6.552 18 C -0.101 4.101 19 C -0.082 4.082 20 C -0.150 4.150 21 C 0.079 3.921 22 F -0.147 7.147 23 C -0.152 4.152 24 C -0.090 4.090 25 H 0.051 0.949 26 H 0.044 0.956 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.061 0.939 32 H 0.040 0.960 33 H 0.037 0.963 34 H 0.255 0.745 35 H 0.027 0.973 36 H 0.109 0.891 37 H 0.357 0.643 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.311 -4.377 8.601 9.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.175 4.175 4 C 0.026 3.974 5 N -0.292 5.292 6 C -0.384 4.384 7 H 0.080 0.920 8 C -0.192 4.192 9 N -0.529 5.529 10 Si 0.722 3.278 11 H -0.207 1.207 12 H -0.217 1.217 13 H -0.209 1.209 14 C -0.004 4.004 15 C 0.058 3.942 16 H 0.123 0.877 17 O -0.357 6.357 18 C -0.102 4.102 19 C -0.100 4.100 20 C -0.169 4.169 21 C 0.060 3.940 22 F -0.126 7.126 23 C -0.170 4.170 24 C -0.108 4.108 25 H 0.070 0.930 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.045 0.955 36 H 0.126 0.874 37 H 0.204 0.796 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.690 -4.073 8.144 9.495 hybrid contribution -0.050 0.818 0.055 0.822 sum 2.640 -3.255 8.200 9.209 Atomic orbital electron populations 1.21763 0.96874 1.00367 1.01644 1.21524 0.95013 0.98646 1.00874 1.22199 0.99484 0.93879 1.01981 1.20919 0.90834 0.87091 0.98514 1.43677 1.73669 1.09999 1.01870 1.19070 1.38012 0.91143 0.90152 0.92017 1.25056 0.97481 0.98562 0.98140 1.69963 1.33260 1.10478 1.39223 0.86519 0.80003 0.79241 0.82023 1.20718 1.21651 1.20922 1.21586 0.89081 1.02934 0.86814 1.21945 1.02132 0.79457 0.90653 0.87660 1.86632 1.64720 1.21968 1.62336 1.21029 0.96726 0.95449 0.97020 1.20935 0.97085 0.94329 0.97648 1.21103 1.03387 1.01090 0.91333 1.17666 1.02773 0.92453 0.81109 1.91459 1.92604 1.82124 1.46437 1.21020 1.02429 0.94126 0.99466 1.20718 0.99143 0.99913 0.91068 0.92964 0.93734 0.93161 0.92713 0.92978 0.93237 0.91979 0.94202 0.94464 0.93489 0.95471 0.87360 0.79642 0.84845 0.85094 0.85191 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.91 37.16 0.37 -1.65 16 2 C -0.12 -1.84 5.93 -26.73 -0.16 -2.00 16 3 C -0.14 -2.57 5.54 -26.73 -0.15 -2.71 16 4 C 0.15 3.08 5.40 -4.05 -0.02 3.06 16 5 N -0.57 -13.39 2.37 -173.24 -0.41 -13.80 16 6 C -0.25 -6.62 9.48 -15.06 -0.14 -6.77 16 7 H 0.06 1.64 7.93 -52.49 -0.42 1.22 16 8 C 0.01 0.19 4.94 -17.43 -0.09 0.11 16 9 N -0.89 -24.20 11.34 55.49 0.63 -23.57 16 10 Si 0.89 20.81 29.61 -169.99 -5.03 15.77 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 C 0.12 2.66 4.97 -4.04 -0.02 2.64 16 15 C 0.12 2.22 3.48 -27.88 -0.10 2.13 16 16 H 0.11 2.19 8.05 -51.93 -0.42 1.77 16 17 O -0.55 -9.70 11.87 -35.23 -0.42 -10.11 16 18 C -0.10 -1.63 5.01 -104.62 -0.52 -2.16 16 19 C -0.08 -1.27 9.68 -39.59 -0.38 -1.66 16 20 C -0.15 -2.14 10.03 -39.51 -0.40 -2.54 16 21 C 0.08 1.14 7.30 -39.42 -0.29 0.85 16 22 F -0.15 -2.11 17.27 2.25 0.04 -2.07 16 23 C -0.15 -2.03 10.03 -39.51 -0.40 -2.43 16 24 C -0.09 -1.27 9.32 -39.59 -0.37 -1.64 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.04 0.82 8.05 -51.93 -0.42 0.40 16 33 H 0.04 0.68 6.90 -51.93 -0.36 0.32 16 34 H 0.26 6.80 8.31 -40.82 -0.34 6.47 16 35 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 36 H 0.11 2.68 5.33 -51.93 -0.28 2.41 16 37 H 0.36 5.01 7.13 45.56 0.32 5.34 16 38 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 39 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 41 H 0.13 1.50 6.61 -52.49 -0.35 1.15 16 LS Contribution 342.35 15.07 5.16 5.16 Total: -1.00 -27.96 342.35 -8.39 -36.35 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -5.69 Total: 7.05 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -2.66 Total: -14.77 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 0.22 Total: -37.37 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -0.42 Total: -10.11 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.04 Total: -2.07 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.03 Total: 15.77 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.96 -8.39 -36.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252846943.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.358 kcal (2) G-P(sol) polarization free energy of solvation -27.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds