Wall clock time and date at job start Tue Mar 31 2020 05:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47300 * 2 1 4 4 C 1.53000 * 109.47300 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47173 * 184.59719 * 4 3 2 6 6 C 1.36941 * 120.00380 * 274.33440 * 5 4 3 7 7 H 1.08004 * 119.99334 * 327.44654 * 6 5 4 8 8 C 1.38805 * 120.00419 * 147.44646 * 6 5 4 9 9 N 1.31617 * 120.00397 * 155.03437 * 8 6 5 10 10 Si 1.86806 * 120.00044 * 335.03040 * 8 6 5 11 11 H 1.48498 * 109.47044 * 95.35288 * 10 8 6 12 12 H 1.48497 * 109.47228 * 215.35746 * 10 8 6 13 13 H 1.48508 * 109.46889 * 335.35743 * 10 8 6 14 14 C 1.46501 * 119.99998 * 94.33366 * 5 4 3 15 15 C 1.53000 * 109.47450 * 83.92535 * 14 5 4 16 16 H 1.09004 * 109.46964 * 302.24588 * 15 14 5 17 17 O 1.42899 * 109.47184 * 62.24108 * 15 14 5 18 18 C 1.50697 * 109.47589 * 182.24520 * 15 14 5 19 19 C 1.38241 * 119.97424 * 99.03130 * 18 15 14 20 20 C 1.38198 * 120.02479 * 180.02562 * 19 18 15 21 21 C 1.38455 * 119.97658 * 0.23247 * 20 19 18 22 22 F 1.35102 * 120.02743 * 179.72291 * 21 20 19 23 23 C 1.38458 * 119.94622 * 359.49225 * 21 20 19 24 24 C 1.38204 * 119.97393 * 0.52764 * 23 21 20 25 25 H 1.09002 * 109.46675 * 299.99980 * 1 2 3 26 26 H 1.08995 * 109.46718 * 60.00255 * 1 2 3 27 27 H 1.09004 * 109.47236 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47475 * 239.99638 * 2 1 3 29 29 H 1.08999 * 109.47127 * 120.00018 * 2 1 3 30 30 H 1.09003 * 109.47553 * 59.99652 * 3 2 1 31 31 H 1.08999 * 109.47046 * 300.00068 * 3 2 1 32 32 H 1.08996 * 109.47413 * 64.59492 * 4 3 2 33 33 H 1.09003 * 109.46853 * 304.59295 * 4 3 2 34 34 H 0.97000 * 120.00484 * 179.97438 * 9 8 6 35 35 H 1.08998 * 109.46973 * 323.92138 * 14 5 4 36 36 H 1.08995 * 109.47303 * 203.92294 * 14 5 4 37 37 H 0.96704 * 113.99575 * 60.00555 * 17 15 14 38 38 H 1.08005 * 119.98762 * 0.02562 * 19 18 15 39 39 H 1.08007 * 120.00958 * 179.97438 * 20 19 18 40 40 H 1.08002 * 120.01553 * 180.25485 * 23 21 20 41 41 H 1.08001 * 119.98461 * 179.74304 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 7 4.0583 2.8192 0.1113 6 6 4.2026 3.5871 -1.0133 7 1 4.4771 3.1259 -1.9505 8 6 3.9959 4.9582 -0.9488 9 7 4.5776 5.7533 -1.8216 10 14 2.8922 5.6751 0.3769 11 1 3.7214 6.1109 1.5291 12 1 2.1538 6.8412 -0.1709 13 1 1.9238 4.6427 0.8264 14 6 4.3923 3.3745 1.4252 15 6 5.8185 2.9691 1.8028 16 1 5.8999 1.8821 1.8002 17 8 6.7364 3.5178 0.8550 18 6 6.1426 3.4937 3.1778 19 6 6.0517 2.6579 4.2751 20 6 6.3482 3.1381 5.5366 21 6 6.7318 4.4581 5.7019 22 9 7.0165 4.9301 6.9353 23 6 6.8281 5.2928 4.6014 24 6 6.5307 4.8105 3.3408 25 1 -0.3633 0.5139 0.8900 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9338 1.0014 -0.9274 33 1 3.9330 0.8591 0.8469 34 1 4.4329 6.7114 -1.7768 35 1 3.6959 2.9896 2.1701 36 1 4.3213 4.4616 1.3890 37 1 6.7185 4.4833 0.8036 38 1 5.7487 1.6292 4.1465 39 1 6.2766 2.4849 6.3939 40 1 7.1313 6.3216 4.7285 41 1 6.6017 5.4626 2.4828 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252846944.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:40 Heat of formation + Delta-G solvation = -58.624075 kcal Electronic energy + Delta-G solvation = -22395.940970 eV Core-core repulsion = 18997.697236 eV Total energy + Delta-G solvation = -3398.243734 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.86757 -39.42137 -37.11125 -35.57843 -33.86496 -31.68752 -31.18200 -30.87143 -28.72084 -27.04296 -24.15381 -23.59516 -22.93076 -21.17673 -20.92028 -19.96042 -17.80497 -17.15919 -16.39177 -16.19721 -15.57543 -15.53564 -14.93197 -14.72682 -14.37484 -13.98900 -13.98365 -13.51220 -13.48147 -13.03668 -12.75515 -12.64665 -12.46736 -12.18004 -12.04201 -11.82301 -11.44685 -10.98200 -10.93818 -10.76025 -10.68313 -10.56897 -10.41418 -10.03116 -9.88746 -9.51710 -9.48086 -9.07263 -8.62728 -8.41530 -6.91384 -6.00339 -3.33049 1.18023 1.26945 3.21803 3.43733 3.47065 3.62136 4.28166 4.46663 4.67393 4.75483 4.88672 5.05675 5.20215 5.23804 5.32060 5.32491 5.41869 5.49737 5.53166 5.68960 5.86286 5.91325 5.92633 6.05742 6.08829 6.12927 6.18237 6.22358 6.26981 6.27888 6.33025 6.43914 6.46628 6.59132 6.77743 6.88074 6.92753 7.04648 7.98304 8.32136 8.37253 8.94551 9.69310 10.06846 11.15408 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014398 B = 0.005691 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1944.222694 B = 4918.758776 C = 5927.525358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.122 4.122 3 C -0.140 4.140 4 C 0.151 3.849 5 N -0.595 5.595 6 C -0.246 4.246 7 H 0.081 0.919 8 C 0.030 3.970 9 N -0.897 5.897 10 Si 0.862 3.138 11 H -0.288 1.288 12 H -0.303 1.303 13 H -0.270 1.270 14 C 0.110 3.890 15 C 0.127 3.873 16 H 0.098 0.902 17 O -0.534 6.534 18 C -0.113 4.113 19 C -0.087 4.087 20 C -0.153 4.153 21 C 0.083 3.917 22 F -0.146 7.146 23 C -0.149 4.149 24 C -0.084 4.084 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.038 0.962 34 H 0.261 0.739 35 H 0.044 0.956 36 H 0.065 0.935 37 H 0.371 0.629 38 H 0.132 0.868 39 H 0.132 0.868 40 H 0.133 0.867 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.160 -6.497 11.744 13.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C -0.180 4.180 4 C 0.025 3.975 5 N -0.315 5.315 6 C -0.374 4.374 7 H 0.099 0.901 8 C -0.169 4.169 9 N -0.539 5.539 10 Si 0.693 3.307 11 H -0.217 1.217 12 H -0.231 1.231 13 H -0.195 1.195 14 C -0.017 4.017 15 C 0.064 3.936 16 H 0.116 0.884 17 O -0.338 6.338 18 C -0.114 4.114 19 C -0.105 4.105 20 C -0.172 4.172 21 C 0.064 3.936 22 F -0.124 7.124 23 C -0.168 4.168 24 C -0.102 4.102 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.083 0.917 37 H 0.219 0.781 38 H 0.150 0.850 39 H 0.150 0.850 40 H 0.151 0.849 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.322 -6.950 11.572 13.503 hybrid contribution -0.859 1.365 1.206 2.014 sum -0.537 -5.585 12.778 13.956 Atomic orbital electron populations 1.21770 0.96714 1.00629 1.01654 1.21504 0.95167 0.98137 1.01209 1.22217 0.99086 0.94652 1.02039 1.20908 0.91253 0.86136 0.99195 1.44046 1.73608 1.11152 1.02647 1.18767 1.40332 0.89083 0.89249 0.90128 1.25297 0.98730 0.96222 0.96650 1.69910 1.42112 1.03576 1.38267 0.87219 0.83278 0.78533 0.81686 1.21678 1.23075 1.19464 1.21936 0.92612 0.98936 0.88178 1.21618 0.92003 0.97978 0.81990 0.88420 1.86586 1.60599 1.25624 1.61012 1.21101 0.98195 0.94233 0.97881 1.20870 0.98631 0.99982 0.91041 1.21077 1.03172 0.94138 0.98801 1.17687 1.02900 0.93283 0.79740 1.91470 1.91441 1.88943 1.40587 1.21106 1.03488 1.00323 0.91896 1.20887 0.97218 0.95369 0.96735 0.93193 0.92860 0.93495 0.92344 0.92776 0.93165 0.91724 0.93143 0.94317 0.92871 0.93758 0.91732 0.78123 0.84989 0.85001 0.84897 0.84948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 37.16 0.37 -1.50 16 2 C -0.12 -1.67 5.93 -26.73 -0.16 -1.83 16 3 C -0.14 -2.43 5.52 -26.73 -0.15 -2.58 16 4 C 0.15 2.82 5.69 -4.04 -0.02 2.80 16 5 N -0.59 -13.17 2.10 -173.24 -0.36 -13.53 16 6 C -0.25 -6.48 9.68 -15.06 -0.15 -6.63 16 7 H 0.08 2.35 8.06 -52.48 -0.42 1.93 16 8 C 0.03 0.83 5.26 -17.43 -0.09 0.73 16 9 N -0.90 -26.10 13.97 55.49 0.78 -25.32 16 10 Si 0.86 21.12 25.00 -169.99 -4.25 16.87 16 11 H -0.29 -6.74 6.62 56.52 0.37 -6.36 16 12 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 13 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 14 C 0.11 2.21 3.95 -4.04 -0.02 2.20 16 15 C 0.13 2.24 3.46 -27.88 -0.10 2.14 16 16 H 0.10 1.65 8.01 -51.93 -0.42 1.23 16 17 O -0.53 -10.75 12.83 -35.23 -0.45 -11.20 16 18 C -0.11 -1.74 4.98 -104.62 -0.52 -2.26 16 19 C -0.09 -1.15 9.67 -39.59 -0.38 -1.53 16 20 C -0.15 -1.92 10.03 -39.52 -0.40 -2.32 16 21 C 0.08 1.14 7.30 -39.42 -0.29 0.85 16 22 F -0.15 -2.00 17.27 2.25 0.04 -1.96 16 23 C -0.15 -2.06 10.03 -39.51 -0.40 -2.45 16 24 C -0.08 -1.26 9.32 -39.59 -0.37 -1.63 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.05 0.96 8.07 -51.93 -0.42 0.54 16 33 H 0.04 0.63 8.04 -51.93 -0.42 0.21 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.04 0.83 8.12 -51.93 -0.42 0.40 16 36 H 0.06 1.43 3.11 -51.93 -0.16 1.27 16 37 H 0.37 7.13 7.48 45.56 0.34 7.48 16 38 H 0.13 1.44 8.04 -52.48 -0.42 1.02 16 39 H 0.13 1.33 8.06 -52.48 -0.42 0.91 16 40 H 0.13 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.13 1.96 6.75 -52.49 -0.35 1.60 16 LS Contribution 339.83 15.07 5.12 5.12 Total: -1.00 -29.30 339.83 -7.46 -36.76 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -5.66 Total: 7.27 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -2.66 Total: -14.01 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.41 Total: -38.85 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: -0.45 Total: -11.20 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.04 Total: -1.96 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.25 Total: 16.87 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.30 -7.46 -36.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252846944.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.864 kcal (2) G-P(sol) polarization free energy of solvation -29.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds