Wall clock time and date at job start Tue Mar 31 2020 05:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47215 * 2 1 4 4 C 1.53000 * 109.47181 * 239.99550 * 2 1 3 5 5 C 1.52999 * 109.46954 * 119.99881 * 2 1 3 6 6 H 1.09005 * 109.46884 * 300.00056 * 5 2 1 7 7 O 1.42895 * 109.47578 * 179.97438 * 5 2 1 8 8 C 1.52998 * 109.47277 * 59.99512 * 5 2 1 9 9 N 1.46498 * 109.47410 * 185.00053 * 8 5 2 10 10 C 1.39781 * 120.00460 * 180.02562 * 9 8 5 11 11 C 1.39413 * 119.91236 * 359.97438 * 10 9 8 12 12 C 1.38364 * 120.46760 * 179.69847 * 11 10 9 13 13 C 1.38015 * 120.28847 * 0.28582 * 12 11 10 14 14 F 1.35099 * 120.08713 * 179.97438 * 13 12 11 15 15 C 1.41012 * 119.81613 * 359.97438 * 13 12 11 16 16 C 1.41294 * 120.22392 * 180.02562 * 15 13 12 17 17 H 1.08008 * 119.99515 * 334.69009 * 16 15 13 18 18 C 1.39912 * 120.00109 * 154.69754 * 16 15 13 19 19 N 1.30857 * 120.00192 * 342.87547 * 18 16 15 20 20 Si 1.86798 * 119.99950 * 162.87850 * 18 16 15 21 21 H 1.48498 * 109.47139 * 60.00043 * 20 18 16 22 22 H 1.48501 * 109.47271 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.47274 * 299.99921 * 20 18 16 24 24 C 1.38166 * 119.91959 * 180.26103 * 10 9 8 25 25 H 1.08992 * 109.47161 * 300.00579 * 1 2 3 26 26 H 1.09009 * 109.46695 * 60.00256 * 1 2 3 27 27 H 1.09002 * 109.47371 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46854 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47153 * 299.99708 * 3 2 1 30 30 H 1.08992 * 109.47529 * 59.99646 * 3 2 1 31 31 H 1.09003 * 109.46983 * 300.00160 * 4 2 1 32 32 H 1.09000 * 109.46948 * 60.00438 * 4 2 1 33 33 H 1.08997 * 109.46983 * 180.02562 * 4 2 1 34 34 H 0.96701 * 113.99804 * 300.00169 * 7 5 2 35 35 H 1.09000 * 109.47093 * 65.00219 * 8 5 2 36 36 H 1.08994 * 109.47533 * 305.00711 * 8 5 2 37 37 H 0.97006 * 119.99965 * 0.02562 * 9 8 5 38 38 H 1.08005 * 119.77043 * 359.97438 * 11 10 9 39 39 H 1.08001 * 119.86139 * 180.25261 * 12 11 10 40 40 H 0.96995 * 120.00088 * 180.02562 * 19 18 16 41 41 H 1.07999 * 120.14107 * 359.97438 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7212 1.2493 6 1 1.6766 -0.2073 2.1392 7 8 3.4689 -0.7218 1.2491 8 6 1.5299 -2.1637 1.2494 9 7 1.9174 -2.8186 2.5012 10 6 1.5615 -4.1504 2.7326 11 6 0.8372 -4.8536 1.7711 12 6 0.4842 -6.1742 1.9855 13 6 0.8409 -6.8084 3.1582 14 9 0.4937 -8.0978 3.3635 15 6 1.5689 -6.1070 4.1413 16 6 1.9391 -6.7481 5.3448 17 1 1.3619 -7.5845 5.7107 18 6 3.0531 -6.2994 6.0625 19 7 3.9393 -5.5311 5.4821 20 14 3.2756 -6.7970 7.8491 21 1 3.3598 -8.2766 7.9440 22 1 4.5258 -6.1956 8.3786 23 1 2.1182 -6.3151 8.6450 24 6 1.9232 -4.7648 3.9161 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 -1.7490 -1.2491 32 1 1.6768 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2489 34 1 3.8619 -1.1638 0.4840 35 1 1.9645 -2.7028 0.4076 36 1 0.4436 -2.1650 1.1597 37 1 2.4210 -2.3281 3.1696 38 1 0.5534 -4.3655 0.8503 39 1 -0.0735 -6.7108 1.2322 40 1 4.7118 -5.2203 5.9796 41 1 2.4806 -4.2183 4.6625 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253739720.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:32 Heat of formation + Delta-G solvation = -115.006122 kcal Electronic energy + Delta-G solvation = -22137.379431 eV Core-core repulsion = 18736.690787 eV Total energy + Delta-G solvation = -3400.688643 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.04152 -40.45102 -39.26077 -36.29280 -35.66564 -34.93665 -31.59356 -30.75093 -28.26142 -28.19118 -27.42030 -27.14607 -24.23032 -23.02315 -21.85678 -20.09100 -19.16960 -18.08784 -17.74869 -17.31262 -16.81225 -16.65135 -16.30928 -15.85093 -15.51624 -15.47770 -15.02595 -14.58576 -14.47193 -14.31269 -13.82829 -13.53879 -13.38721 -13.27912 -13.19224 -12.96996 -12.84717 -12.72594 -12.66817 -12.39728 -12.19333 -12.09918 -12.00688 -11.68397 -11.40270 -11.24181 -11.12121 -10.69424 -10.36328 -9.44921 -8.70458 -7.88823 -6.41568 0.95160 1.06423 1.36671 1.48153 1.53719 2.20084 2.67866 2.74741 3.48794 3.62604 3.70010 3.83110 3.96091 4.17673 4.22929 4.30878 4.35739 4.52469 4.68826 4.75551 4.78876 4.83980 4.92968 5.00371 5.05706 5.06910 5.08743 5.11659 5.16745 5.23766 5.33496 5.45881 5.48189 5.50611 5.78370 5.84178 6.04220 6.12709 6.43742 6.75248 6.80930 6.84489 6.97460 7.14508 8.29290 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021299 B = 0.004216 C = 0.003674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.288636 B = 6639.786577 C = 7618.921241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.134 4.134 4 C -0.151 4.151 5 C 0.114 3.886 6 H 0.093 0.907 7 O -0.569 6.569 8 C 0.100 3.900 9 N -0.747 5.747 10 C 0.222 3.778 11 C -0.273 4.273 12 C -0.084 4.084 13 C -0.107 4.107 14 F -0.177 7.177 15 C 0.091 3.909 16 C -0.500 4.500 17 H 0.068 0.932 18 C 0.041 3.959 19 N -0.813 5.813 20 Si 0.982 3.018 21 H -0.263 1.263 22 H -0.261 1.261 23 H -0.260 1.260 24 C -0.240 4.240 25 H 0.056 0.944 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.382 0.618 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.394 0.606 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.290 0.710 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.217 13.490 -10.133 17.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.090 4.090 3 C -0.191 4.191 4 C -0.209 4.209 5 C 0.054 3.946 6 H 0.111 0.889 7 O -0.376 6.376 8 C -0.025 4.025 9 N -0.378 5.378 10 C 0.120 3.880 11 C -0.296 4.296 12 C -0.104 4.104 13 C -0.128 4.128 14 F -0.157 7.157 15 C 0.087 3.913 16 C -0.529 4.529 17 H 0.086 0.914 18 C -0.175 4.175 19 N -0.438 5.438 20 Si 0.802 3.198 21 H -0.187 1.187 22 H -0.185 1.185 23 H -0.184 1.184 24 C -0.265 4.265 25 H 0.075 0.925 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.231 0.769 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.228 0.772 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.101 0.899 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.159 13.946 -9.757 17.157 hybrid contribution 0.366 -0.924 0.635 1.179 sum -1.793 13.022 -9.122 16.000 Atomic orbital electron populations 1.21956 0.93426 1.02369 1.02650 1.21091 0.96703 0.96516 0.94692 1.21758 1.01259 0.94117 1.01952 1.21991 1.01431 1.00497 0.96934 1.22111 0.80701 0.92890 0.98854 0.88881 1.86562 1.19332 1.81046 1.50678 1.22166 1.00141 0.93518 0.86644 1.44469 1.63150 1.09381 1.20838 1.17751 0.92449 0.84748 0.93076 1.20043 1.13090 0.94892 1.01597 1.20589 0.99621 0.95360 0.94819 1.18104 1.15924 0.79624 0.99111 1.91196 1.91841 1.36769 1.95863 1.17679 0.89737 0.92032 0.91821 1.19646 1.11489 1.15339 1.06391 0.91414 1.26685 0.93505 0.93131 1.04162 1.69879 1.08245 1.26839 1.38847 0.85260 0.78861 0.79535 0.76108 1.18742 1.18501 1.18380 1.20467 1.12802 0.94495 0.98725 0.92514 0.91060 0.92336 0.92573 0.91460 0.93052 0.92360 0.91035 0.91983 0.76852 0.92247 0.91339 0.77247 0.85324 0.85475 0.89937 0.87318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 8.13 71.98 0.59 -1.63 16 2 C -0.09 -1.43 0.63 -52.18 -0.03 -1.46 16 3 C -0.13 -2.02 8.33 71.98 0.60 -1.42 16 4 C -0.15 -2.15 7.82 71.98 0.56 -1.59 16 5 C 0.11 2.45 2.33 30.59 0.07 2.52 16 6 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 7 O -0.57 -13.46 12.57 -148.98 -1.87 -15.34 16 8 C 0.10 2.60 3.82 86.38 0.33 2.93 16 9 N -0.75 -26.63 5.68 -339.54 -1.93 -28.56 16 10 C 0.22 9.94 6.64 38.14 0.25 10.20 16 11 C -0.27 -11.54 9.32 22.58 0.21 -11.33 16 12 C -0.08 -3.87 10.00 22.25 0.22 -3.65 16 13 C -0.11 -5.76 7.31 22.90 0.17 -5.60 16 14 F -0.18 -9.65 16.71 44.97 0.75 -8.89 16 15 C 0.09 5.21 5.57 -21.26 -0.12 5.09 16 16 C -0.50 -28.75 8.77 23.43 0.21 -28.55 16 17 H 0.07 3.91 7.74 -2.91 -0.02 3.89 16 18 C 0.04 2.15 5.15 85.24 0.44 2.59 16 19 N -0.81 -43.08 10.97 21.82 0.24 -42.84 16 20 Si 0.98 39.54 29.59 68.60 2.03 41.57 16 21 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 22 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 23 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 24 C -0.24 -12.71 8.52 22.84 0.19 -12.52 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.06 0.95 6.32 -2.39 -0.02 0.94 16 28 H 0.06 0.92 7.68 -2.38 -0.02 0.90 16 29 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 31 H 0.06 0.90 6.54 -2.39 -0.02 0.88 16 32 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.06 0.82 6.78 -2.39 -0.02 0.80 16 34 H 0.38 7.20 7.33 -74.06 -0.54 6.66 16 35 H 0.06 1.53 6.51 -2.39 -0.02 1.51 16 36 H 0.07 1.74 5.97 -2.39 -0.01 1.72 16 37 H 0.39 14.22 8.48 -92.70 -0.79 13.43 16 38 H 0.13 4.49 6.70 -2.91 -0.02 4.47 16 39 H 0.13 4.98 8.06 -2.91 -0.02 4.95 16 40 H 0.29 13.82 8.30 -92.71 -0.77 13.06 16 41 H 0.11 5.97 6.19 -2.91 -0.02 5.96 16 Total: -1.00 -63.88 330.63 2.64 -61.24 By element: Atomic # 1 Polarization: 37.51 SS G_CDS: -0.27 Total: 37.24 kcal Atomic # 6 Polarization: -48.11 SS G_CDS: 3.69 Total: -44.42 kcal Atomic # 7 Polarization: -69.71 SS G_CDS: -1.69 Total: -71.40 kcal Atomic # 8 Polarization: -13.46 SS G_CDS: -1.87 Total: -15.34 kcal Atomic # 9 Polarization: -9.65 SS G_CDS: 0.75 Total: -8.89 kcal Atomic # 14 Polarization: 39.54 SS G_CDS: 2.03 Total: 41.57 kcal Total: -63.88 2.64 -61.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253739720.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.766 kcal (2) G-P(sol) polarization free energy of solvation -63.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.240 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds