Wall clock time and date at job start Tue Mar 31 2020 05:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47081 * 2 1 4 4 C 1.52998 * 109.46675 * 120.00198 * 2 1 3 5 5 C 1.53001 * 109.46897 * 239.99557 * 2 1 3 6 6 H 1.09000 * 109.46872 * 180.02562 * 5 2 1 7 7 O 1.42896 * 109.47237 * 300.00444 * 5 2 1 8 8 C 1.53000 * 109.46982 * 60.00411 * 5 2 1 9 9 N 1.46499 * 109.47226 * 179.97438 * 8 5 2 10 10 C 1.39777 * 119.99883 * 180.02562 * 9 8 5 11 11 C 1.39409 * 119.91631 * 359.72247 * 10 9 8 12 12 C 1.38376 * 120.46309 * 179.76442 * 11 10 9 13 13 C 1.38004 * 120.28791 * 0.51489 * 12 11 10 14 14 F 1.35102 * 120.08891 * 179.72286 * 13 12 11 15 15 C 1.41005 * 119.82207 * 359.74397 * 13 12 11 16 16 C 1.41289 * 120.22890 * 179.97438 * 15 13 12 17 17 H 1.08008 * 119.99984 * 24.58856 * 16 15 13 18 18 C 1.39913 * 120.00540 * 204.58831 * 16 15 13 19 19 N 1.30857 * 119.99785 * 17.78501 * 18 16 15 20 20 Si 1.86796 * 120.00559 * 197.78777 * 18 16 15 21 21 H 1.48498 * 109.47148 * 59.99861 * 20 18 16 22 22 H 1.48505 * 109.47469 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46865 * 300.00103 * 20 18 16 24 24 C 1.38168 * 119.91066 * 179.97438 * 10 9 8 25 25 H 1.09009 * 109.47178 * 59.99818 * 1 2 3 26 26 H 1.09000 * 109.47184 * 300.00011 * 1 2 3 27 27 H 1.09000 * 109.47686 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47539 * 60.00275 * 3 2 1 29 29 H 1.09000 * 109.46852 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47478 * 299.99496 * 3 2 1 31 31 H 1.08996 * 109.47806 * 59.99721 * 4 2 1 32 32 H 1.09000 * 109.46929 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.47200 * 299.99269 * 4 2 1 34 34 H 0.96695 * 114.00508 * 60.00110 * 7 5 2 35 35 H 1.09000 * 109.47223 * 299.99670 * 8 5 2 36 36 H 1.09008 * 109.47208 * 59.99499 * 8 5 2 37 37 H 0.96999 * 119.99784 * 359.97438 * 9 8 5 38 38 H 1.07992 * 119.77027 * 359.97438 * 11 10 9 39 39 H 1.07999 * 119.85338 * 180.23794 * 12 11 10 40 40 H 0.97002 * 120.00321 * 180.02562 * 19 18 16 41 41 H 1.07997 * 120.14957 * 359.95710 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 2.0400 -0.7214 -1.2492 6 1 3.1300 -0.7218 -1.2490 7 8 1.5636 -2.0686 -1.2492 8 6 1.5300 -0.0001 -2.4985 9 7 2.0188 -0.6904 -3.6946 10 6 1.6816 -0.2125 -4.9641 11 6 0.8754 0.9179 -5.0900 12 6 0.5386 1.4036 -6.3412 13 6 0.9895 0.7668 -7.4795 14 9 0.6537 1.2413 -8.6991 15 6 1.8012 -0.3806 -7.3663 16 6 2.2671 -1.0396 -8.5260 17 1 2.3597 -0.4968 -9.4552 18 6 2.6086 -2.3952 -8.4709 19 7 2.1843 -3.1371 -7.4799 20 14 3.6704 -3.1464 -9.8117 21 1 4.9802 -2.4480 -9.8554 22 1 3.8864 -4.5870 -9.5234 23 1 2.9881 -3.0013 -11.1228 24 6 2.1440 -0.8646 -6.0910 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6766 -1.7489 1.2493 32 1 3.1299 -0.7217 1.2490 33 1 1.6766 -0.2074 2.1392 34 1 0.5996 -2.1449 -1.2492 35 1 0.4400 -0.0001 -2.4985 36 1 1.8934 1.0276 -2.4985 37 1 2.5769 -1.4787 -3.6056 38 1 0.5139 1.4199 -4.2049 39 1 -0.0834 2.2823 -6.4272 40 1 2.4213 -4.0769 -7.4415 41 1 2.7658 -1.7422 -5.9931 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001253739725.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:35 Heat of formation + Delta-G solvation = -97.058893 kcal Electronic energy + Delta-G solvation = -22145.462462 eV Core-core repulsion = 18745.552069 eV Total energy + Delta-G solvation = -3399.910393 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -47.02681 -39.43005 -37.54323 -34.89780 -34.45377 -33.18159 -29.66822 -29.31940 -27.56851 -27.29868 -26.09215 -25.25059 -22.93592 -21.24302 -20.05689 -19.20861 -17.32461 -16.72932 -15.99575 -15.80032 -15.66736 -15.08830 -14.86760 -14.27586 -14.14909 -14.10119 -13.81759 -13.26613 -12.90711 -12.64936 -12.51581 -12.44032 -12.27081 -12.06617 -11.81914 -11.65695 -11.56245 -11.36258 -11.29964 -11.00558 -11.00243 -10.83773 -10.51442 -10.44842 -10.14325 -9.70900 -9.39240 -9.25322 -8.64492 -7.50225 -6.81007 -6.13419 -4.38117 2.78921 2.98990 3.07750 3.11399 3.24866 3.94127 4.03561 4.42251 4.58777 4.62265 4.71811 4.76773 5.10188 5.25650 5.32444 5.47441 5.49130 5.60737 5.62034 5.71954 5.76551 5.82178 5.91564 5.95373 6.01129 6.05912 6.17852 6.20846 6.28199 6.55937 6.91852 7.01309 7.18827 7.32797 7.60920 7.64808 7.71963 7.93805 8.09505 8.35297 8.66081 8.71930 8.81875 8.99232 10.16760 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021285 B = 0.004232 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.179204 B = 6615.093960 C = 7611.348507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.097 4.097 3 C -0.146 4.146 4 C -0.136 4.136 5 C 0.106 3.894 6 H 0.100 0.900 7 O -0.555 6.555 8 C 0.102 3.898 9 N -0.753 5.753 10 C 0.214 3.786 11 C -0.282 4.282 12 C -0.091 4.091 13 C -0.064 4.064 14 F -0.169 7.169 15 C 0.119 3.881 16 C -0.456 4.456 17 H 0.081 0.919 18 C 0.078 3.922 19 N -0.785 5.785 20 Si 0.910 3.090 21 H -0.263 1.263 22 H -0.278 1.278 23 H -0.264 1.264 24 C -0.217 4.217 25 H 0.063 0.937 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.373 0.627 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.395 0.605 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.281 0.719 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.348 2.810 14.699 14.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.098 4.098 3 C -0.203 4.203 4 C -0.193 4.193 5 C 0.047 3.953 6 H 0.118 0.882 7 O -0.360 6.360 8 C -0.024 4.024 9 N -0.387 5.387 10 C 0.115 3.885 11 C -0.305 4.305 12 C -0.111 4.111 13 C -0.085 4.085 14 F -0.148 7.148 15 C 0.115 3.885 16 C -0.485 4.485 17 H 0.099 0.901 18 C -0.140 4.140 19 N -0.410 5.410 20 Si 0.734 3.266 21 H -0.187 1.187 22 H -0.203 1.203 23 H -0.189 1.189 24 C -0.241 4.241 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.221 0.779 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.229 0.771 38 H 0.111 0.889 39 H 0.116 0.884 40 H 0.092 0.908 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.171 2.579 14.859 15.082 hybrid contribution -0.098 -0.388 -0.678 0.788 sum 0.073 2.191 14.181 14.349 Atomic orbital electron populations 1.21989 0.94380 1.01987 1.02496 1.21162 0.96291 0.96252 0.96071 1.21928 1.01237 0.94871 1.02269 1.21778 1.00925 1.00580 0.96022 1.22170 0.99203 0.81948 0.91990 0.88239 1.86570 1.26879 1.25764 1.96813 1.21891 0.98622 0.96410 0.85449 1.44305 1.59383 1.33266 1.01773 1.17643 0.93957 0.92649 0.84265 1.19660 1.12934 1.02521 0.95380 1.20232 1.00260 0.98740 0.91835 1.17755 1.09538 1.02478 0.78769 1.91241 1.91961 1.88386 1.43227 1.17308 0.88367 0.89164 0.93670 1.19474 1.37822 0.94388 0.96777 0.90055 1.25890 0.94194 0.97231 0.96714 1.69851 1.33907 1.07473 1.29759 0.86338 0.81043 0.77851 0.81362 1.18732 1.20293 1.18898 1.20542 1.09507 1.04755 0.89342 0.91788 0.92287 0.92458 0.92475 0.92420 0.91818 0.91994 0.92759 0.92897 0.77925 0.92839 0.92296 0.77117 0.88893 0.88418 0.90783 0.85781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 7.82 37.16 0.29 -1.02 16 2 C -0.10 -0.90 0.63 -154.51 -0.10 -1.00 16 3 C -0.15 -1.30 8.12 37.15 0.30 -1.00 16 4 C -0.14 -1.20 8.33 37.16 0.31 -0.89 16 5 C 0.11 1.25 2.38 -26.73 -0.06 1.18 16 6 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 7 O -0.55 -7.05 12.37 -35.23 -0.44 -7.49 16 8 C 0.10 1.45 3.86 -4.04 -0.02 1.44 16 9 N -0.75 -13.89 5.63 -58.67 -0.33 -14.22 16 10 C 0.21 4.87 6.64 -83.82 -0.56 4.31 16 11 C -0.28 -6.24 9.32 -39.09 -0.36 -6.60 16 12 C -0.09 -2.13 10.00 -39.62 -0.40 -2.53 16 13 C -0.06 -1.70 7.31 -38.62 -0.28 -1.99 16 14 F -0.17 -4.45 16.71 2.25 0.04 -4.41 16 15 C 0.12 3.28 5.58 -106.78 -0.60 2.68 16 16 C -0.46 -12.54 8.78 -37.80 -0.33 -12.87 16 17 H 0.08 2.22 7.73 -52.48 -0.41 1.81 16 18 C 0.08 2.00 5.14 -17.34 -0.09 1.91 16 19 N -0.79 -20.30 10.96 55.55 0.61 -19.70 16 20 Si 0.91 18.97 29.59 -169.99 -5.03 13.94 16 21 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 22 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 24 C -0.22 -5.61 8.52 -38.70 -0.33 -5.94 16 25 H 0.06 0.60 6.43 -51.92 -0.33 0.26 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.47 6.78 -51.93 -0.35 0.11 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 31 H 0.06 0.58 7.68 -51.93 -0.40 0.18 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.37 3.94 7.33 45.56 0.33 4.27 16 35 H 0.05 0.77 6.22 -51.93 -0.32 0.44 16 36 H 0.06 0.84 6.24 -51.92 -0.32 0.51 16 37 H 0.39 7.25 8.35 -40.82 -0.34 6.91 16 38 H 0.09 1.80 6.70 -52.49 -0.35 1.45 16 39 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 40 H 0.28 6.62 8.30 -40.82 -0.34 6.29 16 41 H 0.12 3.29 6.17 -52.49 -0.32 2.96 16 LS Contribution 330.26 15.07 4.98 4.98 Total: -1.00 -28.79 330.26 -7.64 -36.43 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -5.25 Total: 12.78 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -2.22 Total: -22.31 kcal Atomic # 7 Polarization: -34.20 SS G_CDS: 0.28 Total: -33.92 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.44 Total: -7.49 kcal Atomic # 9 Polarization: -4.45 SS G_CDS: 0.04 Total: -4.41 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -28.79 -7.64 -36.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253739725.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.626 kcal (2) G-P(sol) polarization free energy of solvation -28.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds