Wall clock time and date at job start Tue Mar 31 2020 05:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47081 * 2 1 4 4 C 1.52998 * 109.46675 * 120.00198 * 2 1 3 5 5 C 1.53001 * 109.46897 * 239.99557 * 2 1 3 6 6 H 1.09000 * 109.46872 * 180.02562 * 5 2 1 7 7 O 1.42896 * 109.47237 * 300.00444 * 5 2 1 8 8 C 1.53000 * 109.46982 * 60.00411 * 5 2 1 9 9 N 1.46499 * 109.47226 * 179.97438 * 8 5 2 10 10 C 1.39777 * 119.99883 * 180.02562 * 9 8 5 11 11 C 1.39409 * 119.91631 * 359.72247 * 10 9 8 12 12 C 1.38376 * 120.46309 * 179.76442 * 11 10 9 13 13 C 1.38004 * 120.28791 * 0.51489 * 12 11 10 14 14 F 1.35102 * 120.08891 * 179.72286 * 13 12 11 15 15 C 1.41005 * 119.82207 * 359.74397 * 13 12 11 16 16 C 1.41289 * 120.22890 * 179.97438 * 15 13 12 17 17 H 1.08008 * 119.99984 * 24.58856 * 16 15 13 18 18 C 1.39913 * 120.00540 * 204.58831 * 16 15 13 19 19 N 1.30857 * 119.99785 * 17.78501 * 18 16 15 20 20 Si 1.86796 * 120.00559 * 197.78777 * 18 16 15 21 21 H 1.48498 * 109.47148 * 59.99861 * 20 18 16 22 22 H 1.48505 * 109.47469 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.46865 * 300.00103 * 20 18 16 24 24 C 1.38168 * 119.91066 * 179.97438 * 10 9 8 25 25 H 1.09009 * 109.47178 * 59.99818 * 1 2 3 26 26 H 1.09000 * 109.47184 * 300.00011 * 1 2 3 27 27 H 1.09000 * 109.47686 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47539 * 60.00275 * 3 2 1 29 29 H 1.09000 * 109.46852 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47478 * 299.99496 * 3 2 1 31 31 H 1.08996 * 109.47806 * 59.99721 * 4 2 1 32 32 H 1.09000 * 109.46929 * 179.97438 * 4 2 1 33 33 H 1.09001 * 109.47200 * 299.99269 * 4 2 1 34 34 H 0.96695 * 114.00508 * 60.00110 * 7 5 2 35 35 H 1.09000 * 109.47223 * 299.99670 * 8 5 2 36 36 H 1.09008 * 109.47208 * 59.99499 * 8 5 2 37 37 H 0.96999 * 119.99784 * 359.97438 * 9 8 5 38 38 H 1.07992 * 119.77027 * 359.97438 * 11 10 9 39 39 H 1.07999 * 119.85338 * 180.23794 * 12 11 10 40 40 H 0.97002 * 120.00321 * 180.02562 * 19 18 16 41 41 H 1.07997 * 120.14957 * 359.95710 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 2.0400 -0.7214 -1.2492 6 1 3.1300 -0.7218 -1.2490 7 8 1.5636 -2.0686 -1.2492 8 6 1.5300 -0.0001 -2.4985 9 7 2.0188 -0.6904 -3.6946 10 6 1.6816 -0.2125 -4.9641 11 6 0.8754 0.9179 -5.0900 12 6 0.5386 1.4036 -6.3412 13 6 0.9895 0.7668 -7.4795 14 9 0.6537 1.2413 -8.6991 15 6 1.8012 -0.3806 -7.3663 16 6 2.2671 -1.0396 -8.5260 17 1 2.3597 -0.4968 -9.4552 18 6 2.6086 -2.3952 -8.4709 19 7 2.1843 -3.1371 -7.4799 20 14 3.6704 -3.1464 -9.8117 21 1 4.9802 -2.4480 -9.8554 22 1 3.8864 -4.5870 -9.5234 23 1 2.9881 -3.0013 -11.1228 24 6 2.1440 -0.8646 -6.0910 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6766 -1.7489 1.2493 32 1 3.1299 -0.7217 1.2490 33 1 1.6766 -0.2074 2.1392 34 1 0.5996 -2.1449 -1.2492 35 1 0.4400 -0.0001 -2.4985 36 1 1.8934 1.0276 -2.4985 37 1 2.5769 -1.4787 -3.6056 38 1 0.5139 1.4199 -4.2049 39 1 -0.0834 2.2823 -6.4272 40 1 2.4213 -4.0769 -7.4415 41 1 2.7658 -1.7422 -5.9931 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001253739725.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:34 Heat of formation + Delta-G solvation = -114.916377 kcal Electronic energy + Delta-G solvation = -22146.236821 eV Core-core repulsion = 18745.552069 eV Total energy + Delta-G solvation = -3400.684752 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.03896 -40.45182 -39.25545 -36.29356 -35.66320 -34.92725 -31.59171 -30.74800 -28.26288 -28.19475 -27.42425 -27.14782 -24.21501 -23.02222 -21.84716 -20.08799 -19.16962 -18.08604 -17.74475 -17.31551 -16.78972 -16.65973 -16.32904 -15.84864 -15.51672 -15.45710 -15.03501 -14.58727 -14.47211 -14.31252 -13.82190 -13.53813 -13.38995 -13.28198 -13.18378 -12.97145 -12.84383 -12.72250 -12.66792 -12.39062 -12.18599 -12.10113 -12.00496 -11.68407 -11.40241 -11.23993 -11.11570 -10.69401 -10.36237 -9.45361 -8.70886 -7.88562 -6.41261 0.95321 1.06737 1.36678 1.48109 1.53981 2.20001 2.67796 2.74297 3.50379 3.62878 3.69728 3.83589 3.96192 4.17816 4.22843 4.31189 4.35893 4.52748 4.69085 4.75976 4.78988 4.84271 4.92697 5.01134 5.05832 5.06967 5.08518 5.11793 5.16737 5.23880 5.33578 5.45950 5.48306 5.50645 5.78729 5.84553 6.04283 6.12995 6.43829 6.74617 6.80961 6.84575 6.98126 7.15352 8.28687 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.021285 B = 0.004232 C = 0.003678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.179204 B = 6615.093960 C = 7611.348507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 C -0.146 4.146 4 C -0.133 4.133 5 C 0.114 3.886 6 H 0.094 0.906 7 O -0.568 6.568 8 C 0.099 3.901 9 N -0.746 5.746 10 C 0.222 3.778 11 C -0.274 4.274 12 C -0.084 4.084 13 C -0.107 4.107 14 F -0.177 7.177 15 C 0.091 3.909 16 C -0.499 4.499 17 H 0.068 0.932 18 C 0.042 3.958 19 N -0.811 5.811 20 Si 0.982 3.018 21 H -0.260 1.260 22 H -0.261 1.261 23 H -0.263 1.263 24 C -0.242 4.242 25 H 0.057 0.943 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.382 0.618 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.394 0.606 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.290 0.710 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.478 3.054 16.667 16.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.090 4.090 3 C -0.204 4.204 4 C -0.191 4.191 5 C 0.054 3.946 6 H 0.112 0.888 7 O -0.376 6.376 8 C -0.025 4.025 9 N -0.378 5.378 10 C 0.120 3.880 11 C -0.297 4.297 12 C -0.104 4.104 13 C -0.128 4.128 14 F -0.157 7.157 15 C 0.087 3.913 16 C -0.528 4.528 17 H 0.086 0.914 18 C -0.175 4.175 19 N -0.436 5.436 20 Si 0.802 3.198 21 H -0.184 1.184 22 H -0.185 1.185 23 H -0.187 1.187 24 C -0.266 4.266 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.231 0.769 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.228 0.772 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.101 0.899 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 0.027 2.829 16.882 17.117 hybrid contribution -0.113 -0.416 -1.114 1.194 sum -0.086 2.413 15.768 15.952 Atomic orbital electron populations 1.22000 0.93643 1.02408 1.02832 1.21091 0.96811 0.96257 0.94845 1.21942 1.01287 0.94434 1.02702 1.21757 1.00793 1.00304 0.96220 1.22118 0.98869 0.81653 0.91911 0.88837 1.86555 1.27866 1.26315 1.96830 1.22156 0.99007 0.96719 0.84634 1.44447 1.58603 1.33123 1.01626 1.17749 0.92818 0.92248 0.85182 1.20038 1.11649 1.01859 0.96165 1.20586 0.99461 0.99068 0.91248 1.18093 1.11538 1.03704 0.79506 1.91196 1.92157 1.88469 1.43867 1.17678 0.89004 0.90065 0.94542 1.19649 1.40673 0.95841 0.96648 0.91414 1.26689 0.94743 0.96832 0.99215 1.69883 1.34401 1.08079 1.31272 0.85264 0.78880 0.77594 0.78050 1.18401 1.18475 1.18724 1.20471 1.10860 1.05206 0.90069 0.92367 0.91036 0.92052 0.91089 0.92448 0.92352 0.92613 0.93002 0.91479 0.76884 0.92135 0.91498 0.77192 0.85351 0.85501 0.89909 0.87275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 7.82 71.98 0.56 -1.63 16 2 C -0.09 -1.43 0.63 -52.18 -0.03 -1.46 16 3 C -0.15 -2.19 8.12 71.98 0.58 -1.61 16 4 C -0.13 -2.02 8.33 71.98 0.60 -1.42 16 5 C 0.11 2.44 2.38 30.59 0.07 2.52 16 6 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 7 O -0.57 -13.50 12.37 -148.98 -1.84 -15.34 16 8 C 0.10 2.59 3.86 86.38 0.33 2.93 16 9 N -0.75 -26.60 5.63 -339.52 -1.91 -28.51 16 10 C 0.22 9.96 6.64 38.14 0.25 10.21 16 11 C -0.27 -11.59 9.32 22.58 0.21 -11.38 16 12 C -0.08 -3.86 10.00 22.25 0.22 -3.64 16 13 C -0.11 -5.81 7.31 22.89 0.17 -5.64 16 14 F -0.18 -9.66 16.71 44.97 0.75 -8.91 16 15 C 0.09 5.19 5.58 -21.26 -0.12 5.08 16 16 C -0.50 -28.72 8.78 23.43 0.21 -28.51 16 17 H 0.07 3.91 7.73 -2.91 -0.02 3.89 16 18 C 0.04 2.16 5.14 85.24 0.44 2.60 16 19 N -0.81 -42.90 10.96 21.82 0.24 -42.66 16 20 Si 0.98 39.48 29.59 68.60 2.03 41.51 16 21 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 22 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 23 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 24 C -0.24 -12.77 8.52 22.84 0.19 -12.58 16 25 H 0.06 0.91 6.43 -2.38 -0.02 0.90 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.83 6.78 -2.39 -0.02 0.82 16 28 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 0.94 6.43 -2.39 -0.02 0.92 16 31 H 0.05 0.92 7.68 -2.39 -0.02 0.90 16 32 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 0.83 8.14 -2.39 -0.02 0.82 16 34 H 0.38 7.35 7.33 -74.06 -0.54 6.80 16 35 H 0.06 1.55 6.22 -2.39 -0.01 1.54 16 36 H 0.07 1.70 6.24 -2.38 -0.01 1.69 16 37 H 0.39 14.26 8.35 -92.71 -0.77 13.49 16 38 H 0.13 4.49 6.70 -2.91 -0.02 4.47 16 39 H 0.13 4.98 8.06 -2.91 -0.02 4.95 16 40 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 41 H 0.11 6.00 6.17 -2.91 -0.02 5.98 16 Total: -1.00 -63.68 330.26 2.70 -60.98 By element: Atomic # 1 Polarization: 37.74 SS G_CDS: -0.26 Total: 37.48 kcal Atomic # 6 Polarization: -48.23 SS G_CDS: 3.69 Total: -44.54 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: -1.67 Total: -71.18 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -1.84 Total: -15.34 kcal Atomic # 9 Polarization: -9.66 SS G_CDS: 0.75 Total: -8.91 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 2.03 Total: 41.51 kcal Total: -63.68 2.70 -60.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001253739725.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.940 kcal (2) G-P(sol) polarization free energy of solvation -63.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds