Wall clock time and date at job start Tue Mar 31 2020 05:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46880 * 2 1 4 4 H 1.08996 * 109.47765 * 54.96534 * 3 2 1 5 5 C 1.50704 * 109.47319 * 174.96729 * 3 2 1 6 6 H 1.07994 * 120.00467 * 119.99327 * 5 3 2 7 7 C 1.37884 * 119.99604 * 300.00063 * 5 3 2 8 8 N 1.31519 * 119.99901 * 359.97438 * 7 5 3 9 9 Si 1.86800 * 119.99908 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46998 * 59.99755 * 9 7 5 11 11 H 1.48500 * 109.47124 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46997 * 299.99756 * 9 7 5 13 13 N 1.46906 * 109.47228 * 294.96333 * 3 2 1 14 14 C 1.46902 * 110.99970 * 102.43470 * 13 3 2 15 15 H 1.08999 * 109.46976 * 340.10095 * 14 13 3 16 16 C 1.53005 * 109.46831 * 100.09568 * 14 13 3 17 17 C 1.52995 * 109.47400 * 294.14082 * 16 14 13 18 18 O 1.42897 * 109.47227 * 175.04702 * 17 16 14 19 19 C 1.50696 * 109.47305 * 220.09757 * 14 13 3 20 20 C 1.38246 * 119.97175 * 319.72468 * 19 14 13 21 21 C 1.38203 * 120.02234 * 179.76509 * 20 19 14 22 22 C 1.38452 * 119.97679 * 0.50903 * 21 20 19 23 23 F 1.35097 * 120.02852 * 179.76586 * 22 21 20 24 24 C 1.38464 * 119.94827 * 359.74535 * 22 21 20 25 25 C 1.38203 * 119.97274 * 359.97438 * 24 22 21 26 26 H 1.09001 * 109.47280 * 298.38381 * 1 2 3 27 27 H 1.09004 * 109.47383 * 58.38537 * 1 2 3 28 28 H 1.08998 * 109.47239 * 178.38025 * 1 2 3 29 29 H 1.08997 * 109.46981 * 119.99752 * 2 1 3 30 30 H 1.08999 * 109.47077 * 239.99884 * 2 1 3 31 31 H 0.96997 * 119.99545 * 180.02562 * 8 7 5 32 32 H 1.00900 * 110.99874 * 338.48433 * 13 3 2 33 33 H 1.08999 * 109.46866 * 54.14884 * 16 14 13 34 34 H 1.09005 * 109.46560 * 174.14201 * 16 14 13 35 35 H 1.08999 * 109.47234 * 295.05158 * 17 16 14 36 36 H 1.09007 * 109.47069 * 55.04713 * 17 16 14 37 37 H 0.96700 * 114.00332 * 179.97438 * 18 17 16 38 38 H 1.08005 * 119.98778 * 0.02562 * 20 19 14 39 39 H 1.07999 * 120.01183 * 180.25682 * 21 20 19 40 40 H 1.08003 * 120.01548 * 179.97438 * 24 22 21 41 41 H 1.08000 * 119.98478 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6049 1.9818 0.8414 5 6 3.5418 1.4444 0.1246 6 1 4.1475 1.8888 -0.6512 7 6 4.1425 0.8787 1.2293 8 7 3.4048 0.3379 2.1743 9 14 6.0041 0.8804 1.3835 10 1 6.4995 2.2803 1.3831 11 1 6.3963 0.2174 2.6531 12 1 6.5965 0.1454 0.2372 13 7 1.6520 2.0990 -1.2556 14 6 0.5002 2.9876 -1.0511 15 1 -0.0192 2.7043 -0.1357 16 6 0.9862 4.4338 -0.9351 17 6 1.8246 4.5898 0.3351 18 8 2.3736 5.9082 0.3846 19 6 -0.4417 2.8665 -2.2212 20 6 0.0610 2.7702 -3.5054 21 6 -0.8018 2.6541 -4.5788 22 6 -2.1702 2.6451 -4.3686 23 9 -3.0146 2.5365 -5.4175 24 6 -2.6727 2.7469 -3.0823 25 6 -1.8079 2.8570 -2.0100 26 1 -0.3634 0.4885 0.9041 27 1 -0.3634 0.5387 -0.8752 28 1 -0.3633 -1.0272 -0.0290 29 1 1.8933 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.8275 -0.0597 2.9516 32 1 1.4602 1.4183 -1.9753 33 1 1.5939 4.6837 -1.8047 34 1 0.1270 5.1030 -0.8878 35 1 1.1942 4.4256 1.2090 36 1 2.6337 3.8593 0.3284 37 1 2.9179 6.0786 1.1655 38 1 1.1284 2.7813 -3.6695 39 1 -0.4088 2.5747 -5.5816 40 1 -3.7400 2.7403 -2.9171 41 1 -2.1995 2.9360 -1.0066 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152936.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:32 Heat of formation + Delta-G solvation = -82.816580 kcal Electronic energy + Delta-G solvation = -22636.944052 eV Core-core repulsion = 19237.651252 eV Total energy + Delta-G solvation = -3399.292800 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.86848 -39.51181 -37.12964 -35.90615 -33.59391 -31.67320 -31.12095 -29.84775 -29.30075 -26.69667 -24.30257 -23.07563 -22.61964 -21.77890 -20.04161 -19.72481 -17.66672 -16.78906 -16.50022 -16.25720 -15.62094 -15.56534 -14.99028 -14.70967 -14.25940 -13.76785 -13.52020 -13.45327 -13.19451 -13.15627 -12.88438 -12.68682 -12.34356 -11.75544 -11.67121 -11.33473 -11.19277 -11.06226 -10.88651 -10.80109 -10.66083 -10.43604 -10.04489 -9.82100 -9.77015 -9.25592 -9.09553 -9.05180 -8.46415 -8.38031 -7.33744 -6.03456 -4.06890 1.18874 1.28474 3.30598 3.35459 3.38893 3.63674 4.29309 4.38870 4.61496 4.78383 4.89379 5.06565 5.13190 5.25892 5.37788 5.46866 5.63392 5.85141 5.91019 6.00773 6.07333 6.10499 6.11289 6.13522 6.16610 6.31240 6.33489 6.35386 6.57988 6.71377 6.78064 6.83785 6.90258 6.94725 7.13887 7.31831 7.70420 7.85062 8.13394 8.22847 8.46332 8.51767 9.01514 9.58469 11.02024 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019489 B = 0.004925 C = 0.004425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1436.334042 B = 5683.579237 C = 6326.715125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.148 4.148 3 C 0.217 3.783 4 H 0.032 0.968 5 C -0.492 4.492 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.278 1.278 13 N -0.675 5.675 14 C 0.128 3.872 15 H 0.058 0.942 16 C -0.093 4.093 17 C 0.067 3.933 18 O -0.585 6.585 19 C -0.088 4.088 20 C -0.075 4.075 21 C -0.154 4.154 22 C 0.085 3.915 23 F -0.146 7.146 24 C -0.155 4.155 25 C -0.087 4.087 26 H 0.042 0.958 27 H 0.036 0.964 28 H 0.034 0.966 29 H 0.100 0.900 30 H 0.035 0.965 31 H 0.260 0.740 32 H 0.328 0.672 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.030 0.970 36 H 0.090 0.910 37 H 0.374 0.626 38 H 0.143 0.857 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.016 4.478 -6.850 12.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.187 4.187 3 C 0.110 3.890 4 H 0.049 0.951 5 C -0.531 4.531 6 H 0.081 0.919 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.722 3.278 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.306 5.306 14 C 0.017 3.983 15 H 0.076 0.924 16 C -0.131 4.131 17 C -0.010 4.010 18 O -0.391 6.391 19 C -0.088 4.088 20 C -0.094 4.094 21 C -0.173 4.173 22 C 0.066 3.934 23 F -0.125 7.125 24 C -0.174 4.174 25 C -0.105 4.105 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.118 0.882 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.146 0.854 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.048 0.952 36 H 0.109 0.891 37 H 0.220 0.780 38 H 0.161 0.839 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -8.879 4.928 -7.203 12.450 hybrid contribution 0.276 -0.919 0.644 1.156 sum -8.603 4.008 -6.560 11.537 Atomic orbital electron populations 1.21919 0.99511 0.99504 0.99885 1.22230 0.91518 1.01956 1.03038 1.19353 0.95428 0.88819 0.85389 0.95069 1.21168 0.91057 1.36073 1.04807 0.91858 1.24954 0.98026 0.95552 0.95916 1.69858 1.34858 1.39196 1.09648 0.86623 0.85827 0.78203 0.77098 1.20341 1.21571 1.20386 1.61013 1.33239 1.24677 1.11681 1.20522 0.89733 0.94511 0.93504 0.92390 1.21443 0.98577 0.94622 0.98477 1.22441 0.98348 0.83970 0.96280 1.86347 1.70565 1.33401 1.48750 1.20363 0.94071 0.98838 0.95577 1.21038 1.00697 0.96650 0.90985 1.21154 0.91373 1.04040 1.00691 1.17726 0.87769 1.04010 0.83870 1.91469 1.70886 1.93736 1.56408 1.21062 1.00781 1.04409 0.91146 1.20957 0.92541 0.98352 0.98692 0.93878 0.94464 0.94713 0.88182 0.94602 0.93004 0.85355 0.90938 0.92888 0.95153 0.89147 0.78017 0.83927 0.84966 0.85127 0.85219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.05 37.16 0.34 -2.44 16 2 C -0.15 -3.24 5.08 -26.73 -0.14 -3.37 16 3 C 0.22 4.84 1.06 -68.86 -0.07 4.77 16 4 H 0.03 0.76 6.46 -51.93 -0.34 0.43 16 5 C -0.49 -12.46 7.91 -34.44 -0.27 -12.74 16 6 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 7 C 0.06 1.46 5.29 -17.81 -0.09 1.36 16 8 N -0.90 -24.04 11.30 55.43 0.63 -23.42 16 9 Si 0.89 20.55 29.54 -169.99 -5.02 15.53 16 10 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.68 -12.62 5.25 -102.17 -0.54 -13.15 16 14 C 0.13 2.07 1.33 -68.86 -0.09 1.98 16 15 H 0.06 1.00 6.50 -51.93 -0.34 0.66 16 16 C -0.09 -1.53 5.23 -26.73 -0.14 -1.67 16 17 C 0.07 1.20 6.26 37.16 0.23 1.43 16 18 O -0.59 -9.98 13.66 -35.23 -0.48 -10.47 16 19 C -0.09 -1.24 4.07 -104.62 -0.43 -1.66 16 20 C -0.08 -1.01 8.77 -39.59 -0.35 -1.36 16 21 C -0.15 -1.91 10.03 -39.52 -0.40 -2.31 16 22 C 0.09 1.10 7.30 -39.42 -0.29 0.81 16 23 F -0.15 -1.92 17.27 2.25 0.04 -1.88 16 24 C -0.16 -1.88 10.03 -39.51 -0.40 -2.27 16 25 C -0.09 -1.11 9.67 -39.59 -0.38 -1.49 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.63 6.03 -51.93 -0.31 0.31 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.10 2.51 5.95 -51.93 -0.31 2.20 16 30 H 0.04 0.78 8.04 -51.93 -0.42 0.36 16 31 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 32 H 0.33 5.93 6.47 -39.29 -0.25 5.68 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 1.90 5.63 -51.92 -0.29 1.61 16 37 H 0.37 4.87 9.12 45.56 0.42 5.29 16 38 H 0.14 1.89 7.57 -52.48 -0.40 1.49 16 39 H 0.13 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 41 H 0.13 1.47 8.04 -52.49 -0.42 1.05 16 LS Contribution 332.17 15.07 5.01 5.01 Total: -1.00 -27.09 332.17 -8.01 -35.10 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -5.17 Total: 12.23 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: -2.47 Total: -18.96 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.09 Total: -36.57 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: -0.48 Total: -10.47 kcal Atomic # 9 Polarization: -1.92 SS G_CDS: 0.04 Total: -1.88 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.09 -8.01 -35.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152936.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.714 kcal (2) G-P(sol) polarization free energy of solvation -27.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds