Wall clock time and date at job start Tue Mar 31 2020 05:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47105 * 2 1 4 4 H 1.09006 * 109.47291 * 305.30938 * 3 2 1 5 5 C 1.50702 * 109.47312 * 185.31026 * 3 2 1 6 6 H 1.07992 * 120.00149 * 240.00102 * 5 3 2 7 7 C 1.37882 * 119.99664 * 60.00017 * 5 3 2 8 8 N 1.31513 * 120.00391 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99871 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.46911 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.47128 * 119.99794 * 9 7 5 12 12 H 1.48495 * 109.47059 * 239.99815 * 9 7 5 13 13 N 1.46902 * 109.47405 * 65.30884 * 3 2 1 14 14 C 1.46897 * 111.00244 * 243.46303 * 13 3 2 15 15 H 1.08998 * 109.47152 * 38.74328 * 14 13 3 16 16 C 1.52998 * 109.47059 * 158.74495 * 14 13 3 17 17 C 1.52992 * 109.47081 * 294.17657 * 16 14 13 18 18 O 1.42904 * 109.47114 * 184.66817 * 17 16 14 19 19 C 1.50700 * 109.46796 * 278.74667 * 14 13 3 20 20 C 1.38243 * 119.97463 * 319.72403 * 19 14 13 21 21 C 1.38206 * 120.02343 * 179.73033 * 20 19 14 22 22 C 1.38464 * 119.97159 * 0.52442 * 21 20 19 23 23 F 1.35100 * 120.01944 * 179.72517 * 22 21 20 24 24 C 1.38459 * 119.95137 * 359.74823 * 22 21 20 25 25 C 1.38196 * 119.97149 * 0.02562 * 24 22 21 26 26 H 1.09002 * 109.47200 * 295.80441 * 1 2 3 27 27 H 1.09006 * 109.47288 * 55.80562 * 1 2 3 28 28 H 1.08997 * 109.47100 * 175.80151 * 1 2 3 29 29 H 1.09003 * 109.46984 * 239.99905 * 2 1 3 30 30 H 1.09000 * 109.47308 * 120.00136 * 2 1 3 31 31 H 0.97003 * 120.00334 * 179.97438 * 8 7 5 32 32 H 1.00896 * 110.99503 * 7.42022 * 13 3 2 33 33 H 1.09000 * 109.47181 * 54.18205 * 16 14 13 34 34 H 1.09008 * 109.46835 * 174.17774 * 16 14 13 35 35 H 1.08999 * 109.47426 * 304.66570 * 17 16 14 36 36 H 1.08999 * 109.47336 * 64.66813 * 17 16 14 37 37 H 0.96705 * 113.99588 * 175.00554 * 18 17 16 38 38 H 1.07991 * 119.98744 * 359.97438 * 20 19 14 39 39 H 1.07994 * 120.00939 * 180.29774 * 21 20 19 40 40 H 1.07995 * 120.01508 * 179.97438 * 24 22 21 41 41 H 1.08000 * 119.98569 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6010 1.9831 -0.8387 5 6 3.5412 1.4446 -0.1315 6 1 4.1504 1.8877 0.6423 7 6 4.1369 0.8807 -1.2398 8 7 3.3951 0.3405 -2.1819 9 14 5.9978 0.8826 -1.4025 10 1 6.5977 1.5457 -0.2168 11 1 6.4886 -0.5163 -1.4890 12 1 6.3865 1.6204 -2.6312 13 7 1.6577 2.0971 1.2584 14 6 0.7428 3.2194 1.0112 15 1 0.0457 2.9519 0.2172 16 6 -0.0367 3.5330 2.2899 17 6 -0.9519 2.3555 2.6310 18 8 -1.7586 2.6911 3.7618 19 6 1.5357 4.4318 0.5961 20 6 2.7344 4.7205 1.2214 21 6 3.4651 5.8290 0.8377 22 6 2.9909 6.6566 -0.1661 23 9 3.7018 7.7435 -0.5381 24 6 1.7875 6.3696 -0.7878 25 6 1.0608 5.2580 -0.4055 26 1 -0.3634 0.4473 0.9252 27 1 -0.3634 0.5776 -0.8501 28 1 -0.3633 -1.0249 -0.0752 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 3.8141 -0.0559 -2.9617 32 1 1.2517 1.4344 1.9018 33 1 0.6621 3.6995 3.1098 34 1 -0.6386 4.4290 2.1379 35 1 -1.5947 2.1361 1.7785 36 1 -0.3460 1.4799 2.8640 37 1 -2.4173 2.0203 3.9880 38 1 3.1017 4.0774 2.0073 39 1 4.4038 6.0516 1.3230 40 1 1.4165 7.0146 -1.5705 41 1 0.1223 5.0336 -0.8906 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152937.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:34 Heat of formation + Delta-G solvation = -81.510220 kcal Electronic energy + Delta-G solvation = -22733.597278 eV Core-core repulsion = 19334.361126 eV Total energy + Delta-G solvation = -3399.236152 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.53456 -39.17895 -37.29413 -36.18690 -33.69377 -31.65359 -30.70385 -29.82174 -29.41847 -26.41831 -24.51960 -22.86446 -22.59001 -21.82181 -19.90651 -19.75140 -17.49555 -17.24370 -16.35383 -15.99634 -15.34502 -15.27293 -15.21497 -14.58496 -14.47664 -13.99830 -13.62915 -13.32925 -13.15485 -12.97508 -12.94543 -12.47879 -12.10720 -11.73855 -11.60883 -11.48654 -11.19740 -11.15328 -10.85015 -10.71973 -10.62661 -10.51434 -10.00520 -9.85715 -9.76937 -9.74191 -9.14205 -8.63142 -8.32640 -8.08622 -7.34374 -5.96733 -3.98759 1.58785 1.72151 3.32084 3.40599 3.45107 3.98892 4.28281 4.45351 4.66572 4.93853 5.07931 5.19139 5.25182 5.28110 5.33660 5.43359 5.54266 5.73151 5.80612 5.81396 5.92146 6.01291 6.04845 6.19380 6.29179 6.33229 6.40431 6.47559 6.53971 6.69974 6.73639 6.92094 7.04771 7.10240 7.33591 7.37329 7.59517 7.71384 7.91213 8.25811 8.45185 8.60323 9.08313 9.65953 11.09190 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.009588 B = 0.008509 C = 0.005023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2919.626955 B = 3289.751797 C = 5572.641071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.144 4.144 3 C 0.220 3.780 4 H 0.024 0.976 5 C -0.482 4.482 6 H 0.063 0.937 7 C 0.054 3.946 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.287 1.287 13 N -0.678 5.678 14 C 0.132 3.868 15 H 0.046 0.954 16 C -0.116 4.116 17 C 0.073 3.927 18 O -0.576 6.576 19 C -0.064 4.064 20 C -0.040 4.040 21 C -0.160 4.160 22 C 0.084 3.916 23 F -0.150 7.150 24 C -0.161 4.161 25 C -0.090 4.090 26 H 0.032 0.968 27 H 0.043 0.957 28 H 0.036 0.964 29 H 0.102 0.898 30 H 0.037 0.963 31 H 0.258 0.742 32 H 0.325 0.675 33 H 0.078 0.922 34 H 0.070 0.930 35 H 0.044 0.956 36 H 0.051 0.949 37 H 0.376 0.624 38 H 0.141 0.859 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.101 5.795 6.499 11.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.183 4.183 3 C 0.113 3.887 4 H 0.041 0.959 5 C -0.521 4.521 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.213 1.213 13 N -0.310 5.310 14 C 0.022 3.978 15 H 0.064 0.936 16 C -0.154 4.154 17 C -0.005 4.005 18 O -0.381 6.381 19 C -0.065 4.065 20 C -0.058 4.058 21 C -0.179 4.179 22 C 0.065 3.935 23 F -0.129 7.129 24 C -0.180 4.180 25 C -0.109 4.109 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.120 0.880 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.144 0.856 33 H 0.097 0.903 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.069 0.931 37 H 0.222 0.778 38 H 0.158 0.842 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.107 6.673 6.318 11.617 hybrid contribution 0.068 -0.962 -0.759 1.227 sum -7.039 5.712 5.559 10.634 Atomic orbital electron populations 1.21939 0.99676 0.99689 0.99557 1.22134 0.91274 1.01641 1.03223 1.19246 0.95634 0.88880 0.84951 0.95871 1.21242 0.91089 1.35400 1.04397 0.91897 1.24937 0.97878 0.95808 0.95977 1.69862 1.34522 1.39821 1.09670 0.86554 0.86154 0.77429 0.77967 1.19759 1.21299 1.21306 1.60820 1.41816 1.11797 1.16613 1.20310 0.91619 0.91111 0.94781 0.93644 1.21677 0.97718 0.97733 0.98242 1.22334 0.92811 0.97787 0.87546 1.86466 1.52388 1.49205 1.50038 1.19806 0.95776 0.95320 0.95567 1.20881 0.92651 0.93562 0.98727 1.21135 1.01492 0.96551 0.98710 1.17702 0.91937 0.85913 0.97945 1.91441 1.78013 1.52554 1.90885 1.20910 0.94960 0.99988 1.02109 1.20820 0.99613 0.93837 0.96627 0.94877 0.93789 0.94471 0.88024 0.94386 0.93246 0.85575 0.90321 0.91100 0.93762 0.93101 0.77763 0.84170 0.85425 0.85569 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.73 37.15 0.36 -2.31 16 2 C -0.14 -3.13 5.06 -26.73 -0.14 -3.26 16 3 C 0.22 5.03 1.92 -68.86 -0.13 4.89 16 4 H 0.02 0.60 7.31 -51.93 -0.38 0.22 16 5 C -0.48 -12.64 8.84 -34.44 -0.30 -12.95 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.05 1.46 5.29 -17.82 -0.09 1.36 16 8 N -0.90 -24.99 11.29 55.43 0.63 -24.37 16 9 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 N -0.68 -12.65 5.22 -102.17 -0.53 -13.18 16 14 C 0.13 2.15 2.03 -68.87 -0.14 2.01 16 15 H 0.05 0.77 7.52 -51.93 -0.39 0.38 16 16 C -0.12 -1.60 5.17 -26.74 -0.14 -1.74 16 17 C 0.07 0.90 5.91 37.15 0.22 1.12 16 18 O -0.58 -6.88 13.66 -35.23 -0.48 -7.36 16 19 C -0.06 -1.09 4.71 -104.62 -0.49 -1.58 16 20 C -0.04 -0.69 9.32 -39.59 -0.37 -1.06 16 21 C -0.16 -2.65 10.03 -39.51 -0.40 -3.05 16 22 C 0.08 1.40 7.30 -39.42 -0.29 1.11 16 23 F -0.15 -2.48 17.27 2.25 0.04 -2.44 16 24 C -0.16 -2.51 10.03 -39.52 -0.40 -2.91 16 25 C -0.09 -1.44 9.67 -39.59 -0.38 -1.82 16 26 H 0.03 0.50 5.53 -51.93 -0.29 0.21 16 27 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.10 2.57 5.95 -51.93 -0.31 2.26 16 30 H 0.04 0.81 8.11 -51.93 -0.42 0.39 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.33 5.62 5.19 -39.29 -0.20 5.42 16 33 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.07 0.95 8.14 -51.92 -0.42 0.53 16 35 H 0.04 0.52 7.85 -51.93 -0.41 0.12 16 36 H 0.05 0.63 6.15 -51.93 -0.32 0.31 16 37 H 0.38 2.73 9.12 45.56 0.42 3.14 16 38 H 0.14 2.43 7.72 -52.49 -0.41 2.02 16 39 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 40 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.12 1.70 8.04 -52.49 -0.42 1.28 16 LS Contribution 336.59 15.07 5.07 5.07 Total: -1.00 -28.88 336.59 -8.20 -37.07 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -5.21 Total: 8.97 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -2.69 Total: -20.16 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.09 Total: -37.54 kcal Atomic # 8 Polarization: -6.88 SS G_CDS: -0.48 Total: -7.36 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.44 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.88 -8.20 -37.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152937.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.436 kcal (2) G-P(sol) polarization free energy of solvation -28.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds