Wall clock time and date at job start Tue Mar 31 2020 05:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47087 * 2 1 4 4 H 1.09000 * 109.47066 * 53.89715 * 3 2 1 5 5 C 1.50703 * 109.47083 * 173.89616 * 3 2 1 6 6 H 1.07992 * 120.00184 * 120.00556 * 5 3 2 7 7 C 1.37882 * 119.99930 * 299.99987 * 5 3 2 8 8 N 1.31524 * 119.99965 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00204 * 180.02562 * 7 5 3 10 10 H 1.48509 * 109.47149 * 59.99875 * 9 7 5 11 11 H 1.48496 * 109.47471 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47053 * 300.00146 * 9 7 5 13 13 N 1.46899 * 109.47284 * 293.89654 * 3 2 1 14 14 C 1.46891 * 111.00121 * 106.91885 * 13 3 2 15 15 H 1.09001 * 109.47049 * 320.60959 * 14 13 3 16 16 C 1.52999 * 109.47061 * 200.60853 * 14 13 3 17 17 C 1.53003 * 109.47064 * 65.56221 * 16 14 13 18 18 O 1.42902 * 109.46875 * 183.32749 * 17 16 14 19 19 C 1.50700 * 109.47575 * 80.60897 * 14 13 3 20 20 C 1.38243 * 119.97221 * 39.71813 * 19 14 13 21 21 C 1.38191 * 120.02713 * 179.76871 * 20 19 14 22 22 C 1.38466 * 119.97444 * 0.51685 * 21 20 19 23 23 F 1.35097 * 120.02538 * 179.76497 * 22 21 20 24 24 C 1.38457 * 119.94619 * 359.74008 * 22 21 20 25 25 C 1.38197 * 119.97477 * 0.02562 * 24 22 21 26 26 H 1.09009 * 109.46815 * 65.57662 * 1 2 3 27 27 H 1.09003 * 109.46968 * 185.57084 * 1 2 3 28 28 H 1.08999 * 109.47485 * 305.57498 * 1 2 3 29 29 H 1.08997 * 109.47517 * 239.99905 * 2 1 3 30 30 H 1.08999 * 109.47152 * 119.99738 * 2 1 3 31 31 H 0.96994 * 119.99463 * 180.02562 * 8 7 5 32 32 H 1.00897 * 110.99652 * 342.96101 * 13 3 2 33 33 H 1.09005 * 109.47010 * 185.55532 * 16 14 13 34 34 H 1.09000 * 109.47503 * 305.55937 * 16 14 13 35 35 H 1.09000 * 109.47193 * 303.32688 * 17 16 14 36 36 H 1.08999 * 109.47615 * 63.33042 * 17 16 14 37 37 H 0.96699 * 113.99802 * 175.01540 * 18 17 16 38 38 H 1.08001 * 119.98782 * 0.02857 * 20 19 14 39 39 H 1.07999 * 120.01598 * 180.25706 * 21 20 19 40 40 H 1.07993 * 120.01467 * 179.97438 * 24 22 21 41 41 H 1.08002 * 119.99321 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5902 1.9869 0.8303 5 6 3.5394 1.4452 0.1511 6 1 4.1587 1.8849 -0.6167 7 6 4.1206 0.8864 1.2696 8 7 3.3664 0.3506 2.2045 9 14 5.9791 0.8904 1.4573 10 1 6.4737 2.2907 1.4576 11 1 6.3488 0.2351 2.7376 12 1 6.5924 0.1491 0.3260 13 7 1.6743 2.0913 -1.2662 14 6 0.5885 3.0603 -1.0669 15 1 -0.1327 2.6568 -0.3562 16 6 -0.1073 3.3286 -2.4029 17 6 -0.8028 2.0524 -2.8810 18 8 -1.3870 2.2808 -4.1650 19 6 1.1570 4.3482 -0.5291 20 6 2.3595 4.8279 -1.0137 21 6 2.8795 6.0112 -0.5248 22 6 2.2008 6.7111 0.4585 23 9 2.7106 7.8656 0.9406 24 6 0.9991 6.2269 0.9469 25 6 0.4787 5.0458 0.4530 26 1 -0.3633 0.4250 -0.9358 27 1 -0.3633 -1.0228 0.0998 28 1 -0.3634 0.5978 0.8358 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.7753 -0.0421 2.9914 32 1 1.4245 1.4068 -1.9642 33 1 -0.8467 4.1193 -2.2751 34 1 0.6318 3.6382 -3.1418 35 1 -0.0732 1.2458 -2.9520 36 1 -1.5824 1.7758 -2.1712 37 1 -1.7798 1.4925 -4.5642 38 1 2.8908 4.2798 -1.7777 39 1 3.8170 6.3879 -0.9065 40 1 0.4691 6.7716 1.7141 41 1 -0.4589 4.6681 0.8334 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152938.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:36 Heat of formation + Delta-G solvation = -81.346654 kcal Electronic energy + Delta-G solvation = -22723.464474 eV Core-core repulsion = 19324.235415 eV Total energy + Delta-G solvation = -3399.229059 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -48.55518 -39.21228 -37.31528 -36.19060 -33.66598 -31.62987 -30.72854 -29.83510 -29.44289 -26.43719 -24.52389 -22.84165 -22.61647 -21.83397 -19.88440 -19.79360 -17.50569 -17.25923 -16.33521 -16.04850 -15.35677 -15.25998 -15.22416 -14.59848 -14.46990 -13.99661 -13.61446 -13.34686 -13.17485 -12.99449 -12.95481 -12.49367 -12.14733 -11.66887 -11.59754 -11.51611 -11.19935 -11.12941 -10.82741 -10.70098 -10.66470 -10.53402 -10.03343 -9.89028 -9.78273 -9.77447 -9.12748 -8.65740 -8.32518 -8.11170 -7.32944 -5.97309 -3.99810 1.56091 1.69714 3.34499 3.38811 3.42116 3.97214 4.28041 4.44530 4.64366 4.94207 5.07860 5.18168 5.23012 5.26763 5.32694 5.43419 5.54867 5.71382 5.79781 5.80221 5.90983 6.01954 6.05124 6.18945 6.29054 6.32280 6.40626 6.45523 6.51868 6.70043 6.72055 6.91460 7.02951 7.11975 7.31715 7.36290 7.60610 7.71332 7.89415 8.26071 8.47746 8.57713 9.06568 9.64872 11.08649 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.009675 B = 0.008128 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2893.313725 B = 3443.955366 C = 5581.140868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.147 4.147 3 C 0.221 3.779 4 H 0.029 0.971 5 C -0.487 4.487 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.893 3.107 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.677 5.677 14 C 0.130 3.870 15 H 0.047 0.953 16 C -0.115 4.115 17 C 0.073 3.927 18 O -0.576 6.576 19 C -0.066 4.066 20 C -0.041 4.041 21 C -0.160 4.160 22 C 0.085 3.915 23 F -0.150 7.150 24 C -0.161 4.161 25 C -0.090 4.090 26 H 0.033 0.967 27 H 0.035 0.965 28 H 0.044 0.956 29 H 0.035 0.965 30 H 0.101 0.899 31 H 0.259 0.741 32 H 0.326 0.674 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.376 0.624 38 H 0.142 0.858 39 H 0.128 0.872 40 H 0.127 0.873 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.238 5.254 -6.737 11.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.186 4.186 3 C 0.113 3.887 4 H 0.046 0.954 5 C -0.526 4.526 6 H 0.080 0.920 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.204 1.204 13 N -0.310 5.310 14 C 0.019 3.981 15 H 0.065 0.935 16 C -0.153 4.153 17 C -0.005 4.005 18 O -0.381 6.381 19 C -0.067 4.067 20 C -0.059 4.059 21 C -0.179 4.179 22 C 0.066 3.934 23 F -0.129 7.129 24 C -0.180 4.180 25 C -0.109 4.109 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.054 0.946 30 H 0.120 0.880 31 H 0.069 0.931 32 H 0.145 0.855 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.223 0.777 38 H 0.159 0.841 39 H 0.146 0.854 40 H 0.145 0.855 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -7.485 6.281 -6.371 11.664 hybrid contribution 0.214 -1.116 0.581 1.276 sum -7.270 5.165 -5.790 10.633 Atomic orbital electron populations 1.21959 0.99647 0.99676 0.99588 1.22211 0.91378 1.01927 1.03116 1.19220 0.95627 0.88682 0.85122 0.95360 1.21151 0.91176 1.35961 1.04272 0.92023 1.24937 0.97883 0.95733 0.95980 1.69848 1.34648 1.39781 1.09509 0.86646 0.86002 0.78184 0.77059 1.20385 1.21559 1.20427 1.60836 1.37262 1.20098 1.12792 1.20307 0.92084 0.91416 0.94267 0.93479 1.21666 0.99607 0.96908 0.97128 1.22337 0.95968 0.98162 0.84027 1.86462 1.78428 1.38956 1.34241 1.19836 0.95237 0.95671 0.95997 1.20907 0.94030 0.92444 0.98518 1.21147 1.01088 0.97080 0.98592 1.17708 0.94546 0.83967 0.97224 1.91443 1.87083 1.47059 1.87269 1.20917 0.95963 0.98481 1.02643 1.20830 0.99853 0.94061 0.96157 0.94825 0.94551 0.93720 0.94578 0.88038 0.93102 0.85483 0.91223 0.90250 0.93035 0.93810 0.77744 0.84061 0.85378 0.85532 0.85807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 8.82 37.16 0.33 -2.36 16 2 C -0.15 -3.20 5.07 -26.73 -0.14 -3.34 16 3 C 0.22 5.05 1.91 -68.86 -0.13 4.92 16 4 H 0.03 0.74 7.34 -51.93 -0.38 0.35 16 5 C -0.49 -12.77 8.84 -34.44 -0.30 -13.07 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.05 1.48 5.29 -17.81 -0.09 1.38 16 8 N -0.90 -24.96 11.29 55.43 0.63 -24.34 16 9 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.68 -12.65 5.11 -102.17 -0.52 -13.17 16 14 C 0.13 2.10 1.57 -68.87 -0.11 1.99 16 15 H 0.05 0.79 6.71 -51.93 -0.35 0.44 16 16 C -0.12 -1.60 5.18 -26.73 -0.14 -1.73 16 17 C 0.07 0.91 5.90 37.16 0.22 1.13 16 18 O -0.58 -6.93 13.66 -35.23 -0.48 -7.41 16 19 C -0.07 -1.12 4.57 -104.62 -0.48 -1.60 16 20 C -0.04 -0.70 9.32 -39.60 -0.37 -1.07 16 21 C -0.16 -2.63 10.03 -39.51 -0.40 -3.02 16 22 C 0.08 1.39 7.30 -39.42 -0.29 1.11 16 23 F -0.15 -2.45 17.27 2.25 0.04 -2.41 16 24 C -0.16 -2.48 10.03 -39.52 -0.40 -2.88 16 25 C -0.09 -1.42 9.67 -39.59 -0.38 -1.80 16 26 H 0.03 0.51 5.18 -51.92 -0.27 0.24 16 27 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.04 0.81 8.13 -51.93 -0.42 0.39 16 29 H 0.04 0.77 8.04 -51.93 -0.42 0.35 16 30 H 0.10 2.57 5.93 -51.93 -0.31 2.26 16 31 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.33 5.69 5.52 -39.29 -0.22 5.47 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.05 0.65 5.93 -51.93 -0.31 0.34 16 36 H 0.04 0.52 7.74 -51.93 -0.40 0.12 16 37 H 0.38 2.77 9.12 45.56 0.42 3.19 16 38 H 0.14 2.44 7.71 -52.49 -0.40 2.03 16 39 H 0.13 1.86 8.06 -52.49 -0.42 1.44 16 40 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 41 H 0.12 1.68 8.04 -52.49 -0.42 1.26 16 LS Contribution 333.72 15.07 5.03 5.03 Total: -1.00 -28.78 333.72 -8.15 -36.92 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -5.14 Total: 9.42 kcal Atomic # 6 Polarization: -17.67 SS G_CDS: -2.68 Total: -20.35 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.10 Total: -37.51 kcal Atomic # 8 Polarization: -6.93 SS G_CDS: -0.48 Total: -7.41 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.04 Total: -2.41 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.78 -8.15 -36.92 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152938.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.423 kcal (2) G-P(sol) polarization free energy of solvation -28.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds