Wall clock time and date at job start Tue Mar 31 2020 05:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46774 * 2 1 4 4 H 1.09004 * 109.47460 * 305.81845 * 3 2 1 5 5 C 1.50700 * 109.47144 * 185.82144 * 3 2 1 6 6 H 1.08000 * 120.00267 * 239.99956 * 5 3 2 7 7 C 1.37876 * 120.00027 * 59.99873 * 5 3 2 8 8 N 1.31517 * 120.00175 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00070 * 359.72905 * 7 5 3 10 10 H 1.48507 * 109.47121 * 270.27564 * 9 7 5 11 11 H 1.48503 * 109.47025 * 30.27030 * 9 7 5 12 12 H 1.48500 * 109.47387 * 150.27547 * 9 7 5 13 13 N 1.46902 * 109.47345 * 65.82397 * 3 2 1 14 14 C 1.46905 * 110.99724 * 258.84088 * 13 3 2 15 15 H 1.08996 * 109.47234 * 20.54039 * 14 13 3 16 16 C 1.53001 * 109.46874 * 260.53614 * 14 13 3 17 17 C 1.53003 * 109.46971 * 65.71687 * 16 14 13 18 18 O 1.42901 * 109.47209 * 178.10967 * 17 16 14 19 19 C 1.50698 * 109.47056 * 140.54047 * 14 13 3 20 20 C 1.38247 * 119.97731 * 39.72407 * 19 14 13 21 21 C 1.38192 * 120.02578 * 179.72932 * 20 19 14 22 22 C 1.38461 * 119.97421 * 0.52489 * 21 20 19 23 23 F 1.35099 * 120.02344 * 179.72835 * 22 21 20 24 24 C 1.38455 * 119.94879 * 359.74533 * 22 21 20 25 25 C 1.38195 * 119.97432 * 0.02562 * 24 22 21 26 26 H 1.09003 * 109.46816 * 182.40860 * 1 2 3 27 27 H 1.08997 * 109.47583 * 302.41283 * 1 2 3 28 28 H 1.09001 * 109.46864 * 62.41480 * 1 2 3 29 29 H 1.09001 * 109.47139 * 240.00193 * 2 1 3 30 30 H 1.08996 * 109.46953 * 120.00048 * 2 1 3 31 31 H 0.97001 * 119.99927 * 179.72224 * 8 7 5 32 32 H 1.00898 * 111.00053 * 134.88777 * 13 3 2 33 33 H 1.08997 * 109.47127 * 185.71617 * 16 14 13 34 34 H 1.08998 * 109.47459 * 305.71343 * 16 14 13 35 35 H 1.08997 * 109.47169 * 298.10640 * 17 16 14 36 36 H 1.08995 * 109.47018 * 58.11018 * 17 16 14 37 37 H 0.96693 * 114.00640 * 180.02562 * 18 17 16 38 38 H 1.07998 * 119.98180 * 359.97438 * 20 19 14 39 39 H 1.08001 * 120.01592 * 180.25392 * 21 20 19 40 40 H 1.08007 * 120.01386 * 179.97438 * 24 22 21 41 41 H 1.08007 * 119.98948 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5940 1.9855 -0.8333 5 6 3.5400 1.4450 -0.1441 6 1 4.1558 1.8859 0.6259 7 6 4.1264 0.8844 -1.2589 8 7 5.4355 0.8871 -1.3850 9 14 3.0619 0.1150 -2.5872 10 1 2.8453 -1.3212 -2.2778 11 1 1.7522 0.8133 -2.6381 12 1 3.7417 0.2412 -3.9014 13 7 1.6683 2.0933 1.2635 14 6 0.4954 2.9594 1.0845 15 1 -0.0456 2.6577 0.1876 16 6 0.9519 4.4126 0.9402 17 6 1.7528 4.5694 -0.3540 18 8 2.1417 5.9355 -0.5110 19 6 -0.4094 2.8338 2.2830 20 6 0.1328 2.7480 3.5519 21 6 -0.6962 2.6385 4.6521 22 6 -2.0699 2.6037 4.4825 23 9 -2.8810 2.4911 5.5570 24 6 -2.6116 2.6841 3.2109 25 6 -1.7808 2.7984 2.1124 26 1 -0.3633 -1.0268 0.0432 27 1 -0.3634 0.5508 0.8675 28 1 -0.3633 0.4759 -0.9109 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.8482 0.4891 -2.1674 32 1 2.4454 2.6112 1.6457 33 1 0.0800 5.0659 0.9092 34 1 1.5783 4.6828 1.7902 35 1 2.6425 3.9413 -0.3090 36 1 1.1372 4.2673 -1.2012 37 1 2.6539 6.1091 -1.3125 38 1 1.2045 2.7706 3.6835 39 1 -0.2725 2.5755 5.6436 40 1 -3.6830 2.6567 3.0773 41 1 -2.2031 2.8607 1.1203 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152939.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:39 Heat of formation + Delta-G solvation = -76.851115 kcal Electronic energy + Delta-G solvation = -22715.728541 eV Core-core repulsion = 19316.694423 eV Total energy + Delta-G solvation = -3399.034118 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -48.81948 -39.46959 -37.42523 -36.07093 -33.74035 -31.98328 -31.06414 -30.14934 -29.45389 -27.08520 -24.43135 -22.99708 -22.54949 -21.90684 -20.32734 -19.85755 -17.62547 -17.15742 -16.93546 -16.25171 -15.56343 -15.50437 -15.33883 -14.90929 -14.21176 -13.93285 -13.67746 -13.45986 -13.41019 -13.23028 -12.97108 -12.67985 -12.41737 -12.16794 -11.97998 -11.65484 -11.50534 -11.21931 -11.02661 -10.84743 -10.75124 -10.66080 -10.23232 -9.90069 -9.58815 -9.41604 -9.12766 -8.98928 -8.70547 -8.39314 -7.64134 -6.21567 -4.22678 1.26338 1.36008 3.18711 3.28528 3.30307 3.69312 4.27645 4.34480 4.41925 4.75578 4.92063 4.94843 5.06216 5.18829 5.35087 5.43943 5.46457 5.51482 5.71181 5.84062 5.96178 5.96641 5.97268 6.01866 6.13006 6.15849 6.21707 6.32190 6.35581 6.44784 6.57829 6.63686 6.71223 6.87603 6.90247 7.00771 7.29911 7.45592 7.83810 7.89416 8.20859 8.45897 8.82704 9.40369 10.90686 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018848 B = 0.005315 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.180863 B = 5267.135265 C = 5979.399324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C 0.188 3.812 4 H 0.011 0.989 5 C -0.529 4.529 6 H 0.078 0.922 7 C 0.075 3.925 8 N -0.894 5.894 9 Si 0.886 3.114 10 H -0.277 1.277 11 H -0.267 1.267 12 H -0.298 1.298 13 N -0.671 5.671 14 C 0.124 3.876 15 H 0.082 0.918 16 C -0.134 4.134 17 C 0.064 3.936 18 O -0.581 6.581 19 C -0.062 4.062 20 C -0.061 4.061 21 C -0.156 4.156 22 C 0.083 3.917 23 F -0.148 7.148 24 C -0.156 4.156 25 C -0.092 4.092 26 H 0.036 0.964 27 H 0.061 0.939 28 H 0.036 0.964 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.265 0.735 32 H 0.344 0.656 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.038 0.962 37 H 0.378 0.622 38 H 0.136 0.864 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.593 4.869 5.221 14.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C 0.080 3.920 4 H 0.029 0.971 5 C -0.567 4.567 6 H 0.096 0.904 7 C -0.128 4.128 8 N -0.531 5.531 9 Si 0.717 3.283 10 H -0.204 1.204 11 H -0.192 1.192 12 H -0.226 1.226 13 N -0.303 5.303 14 C 0.013 3.987 15 H 0.100 0.900 16 C -0.173 4.173 17 C -0.013 4.013 18 O -0.387 6.387 19 C -0.064 4.064 20 C -0.080 4.080 21 C -0.175 4.175 22 C 0.064 3.936 23 F -0.127 7.127 24 C -0.175 4.175 25 C -0.111 4.111 26 H 0.055 0.945 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.164 0.836 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.224 0.776 38 H 0.154 0.846 39 H 0.148 0.852 40 H 0.147 0.853 41 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -13.136 4.321 5.935 15.049 hybrid contribution 0.037 -0.038 -1.630 1.631 sum -13.100 4.283 4.305 14.439 Atomic orbital electron populations 1.21886 0.98239 1.00006 1.00832 1.21877 0.93223 0.99698 1.00594 1.19643 0.95712 0.90636 0.86056 0.97139 1.21241 0.89299 1.39605 1.06527 0.90360 1.24935 0.94743 0.95254 0.97849 1.69891 1.09151 1.44753 1.29314 0.86872 0.80581 0.80166 0.80694 1.20384 1.19171 1.22619 1.60570 1.07269 1.32711 1.29714 1.20548 0.92984 0.90616 0.94563 0.90032 1.22142 1.00176 0.97096 0.97878 1.22427 0.99609 0.82684 0.96591 1.86359 1.76342 1.27853 1.48134 1.20011 0.93256 0.97854 0.95230 1.20882 1.00364 0.95896 0.90811 1.21148 0.91528 1.04302 1.00536 1.17706 0.88314 1.04322 0.83277 1.91462 1.72975 1.93757 1.54456 1.21003 1.00622 1.04746 0.91162 1.20879 0.92793 0.99059 0.98322 0.94506 0.91969 0.94463 0.93909 0.91732 0.92488 0.83624 0.91599 0.90954 0.90406 0.94350 0.77556 0.84593 0.85162 0.85302 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.66 9.03 37.16 0.34 -2.32 16 2 C -0.12 -2.40 5.10 -26.73 -0.14 -2.54 16 3 C 0.19 3.94 0.69 -68.87 -0.05 3.89 16 4 H 0.01 0.24 5.48 -51.93 -0.28 -0.05 16 5 C -0.53 -13.35 8.40 -34.44 -0.29 -13.64 16 6 H 0.08 2.15 7.65 -52.49 -0.40 1.75 16 7 C 0.08 2.02 5.45 -17.82 -0.10 1.92 16 8 N -0.89 -25.76 13.96 55.43 0.77 -24.99 16 9 Si 0.89 20.86 24.41 -169.99 -4.15 16.71 16 10 H -0.28 -6.49 6.82 56.52 0.39 -6.10 16 11 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 12 H -0.30 -7.10 7.11 56.52 0.40 -6.70 16 13 N -0.67 -11.82 4.90 -102.17 -0.50 -12.32 16 14 C 0.12 1.85 1.30 -68.86 -0.09 1.76 16 15 H 0.08 1.26 6.36 -51.93 -0.33 0.93 16 16 C -0.13 -1.97 4.89 -26.73 -0.13 -2.10 16 17 C 0.06 1.03 5.96 37.16 0.22 1.26 16 18 O -0.58 -8.99 13.66 -35.23 -0.48 -9.48 16 19 C -0.06 -0.85 4.31 -104.62 -0.45 -1.31 16 20 C -0.06 -0.82 9.32 -39.59 -0.37 -1.19 16 21 C -0.16 -1.97 10.03 -39.52 -0.40 -2.37 16 22 C 0.08 1.08 7.30 -39.42 -0.29 0.79 16 23 F -0.15 -1.96 17.27 2.25 0.04 -1.92 16 24 C -0.16 -1.88 10.03 -39.52 -0.40 -2.28 16 25 C -0.09 -1.14 9.67 -39.59 -0.38 -1.52 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 1.03 6.10 -51.93 -0.32 0.72 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.04 0.95 3.19 -51.93 -0.17 0.79 16 30 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 32 H 0.34 6.20 7.27 -39.29 -0.29 5.91 16 33 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 34 H 0.07 1.07 8.01 -51.93 -0.42 0.65 16 35 H 0.08 1.45 6.14 -51.93 -0.32 1.14 16 36 H 0.04 0.60 8.09 -51.93 -0.42 0.18 16 37 H 0.38 4.39 9.12 45.56 0.42 4.80 16 38 H 0.14 1.77 7.69 -52.49 -0.40 1.37 16 39 H 0.13 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 41 H 0.13 1.36 8.04 -52.48 -0.42 0.94 16 LS Contribution 326.28 15.07 4.92 4.92 Total: -1.00 -28.43 326.28 -6.99 -35.42 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -5.07 Total: 11.29 kcal Atomic # 6 Polarization: -17.11 SS G_CDS: -2.52 Total: -19.63 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.27 Total: -37.31 kcal Atomic # 8 Polarization: -8.99 SS G_CDS: -0.48 Total: -9.48 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.15 Total: 16.71 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.43 -6.99 -35.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152939.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.430 kcal (2) G-P(sol) polarization free energy of solvation -28.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds