Wall clock time and date at job start Tue Mar 31 2020 05:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.46774 * 2 1 4 4 H 1.09004 * 109.47460 * 305.81845 * 3 2 1 5 5 C 1.50700 * 109.47144 * 185.82144 * 3 2 1 6 6 H 1.08000 * 120.00267 * 239.99956 * 5 3 2 7 7 C 1.37876 * 120.00027 * 59.99873 * 5 3 2 8 8 N 1.31517 * 120.00175 * 179.97438 * 7 5 3 9 9 Si 1.86800 * 120.00070 * 359.72905 * 7 5 3 10 10 H 1.48507 * 109.47121 * 270.27564 * 9 7 5 11 11 H 1.48503 * 109.47025 * 30.27030 * 9 7 5 12 12 H 1.48500 * 109.47387 * 150.27547 * 9 7 5 13 13 N 1.46902 * 109.47345 * 65.82397 * 3 2 1 14 14 C 1.46905 * 110.99724 * 258.84088 * 13 3 2 15 15 H 1.08996 * 109.47234 * 20.54039 * 14 13 3 16 16 C 1.53001 * 109.46874 * 260.53614 * 14 13 3 17 17 C 1.53003 * 109.46971 * 65.71687 * 16 14 13 18 18 O 1.42901 * 109.47209 * 178.10967 * 17 16 14 19 19 C 1.50698 * 109.47056 * 140.54047 * 14 13 3 20 20 C 1.38247 * 119.97731 * 39.72407 * 19 14 13 21 21 C 1.38192 * 120.02578 * 179.72932 * 20 19 14 22 22 C 1.38461 * 119.97421 * 0.52489 * 21 20 19 23 23 F 1.35099 * 120.02344 * 179.72835 * 22 21 20 24 24 C 1.38455 * 119.94879 * 359.74533 * 22 21 20 25 25 C 1.38195 * 119.97432 * 0.02562 * 24 22 21 26 26 H 1.09003 * 109.46816 * 182.40860 * 1 2 3 27 27 H 1.08997 * 109.47583 * 302.41283 * 1 2 3 28 28 H 1.09001 * 109.46864 * 62.41480 * 1 2 3 29 29 H 1.09001 * 109.47139 * 240.00193 * 2 1 3 30 30 H 1.08996 * 109.46953 * 120.00048 * 2 1 3 31 31 H 0.97001 * 119.99927 * 179.72224 * 8 7 5 32 32 H 1.00898 * 111.00053 * 134.88777 * 13 3 2 33 33 H 1.08997 * 109.47127 * 185.71617 * 16 14 13 34 34 H 1.08998 * 109.47459 * 305.71343 * 16 14 13 35 35 H 1.08997 * 109.47169 * 298.10640 * 17 16 14 36 36 H 1.08995 * 109.47018 * 58.11018 * 17 16 14 37 37 H 0.96693 * 114.00640 * 180.02562 * 18 17 16 38 38 H 1.07998 * 119.98180 * 359.97438 * 20 19 14 39 39 H 1.08001 * 120.01592 * 180.25392 * 21 20 19 40 40 H 1.08007 * 120.01386 * 179.97438 * 24 22 21 41 41 H 1.08007 * 119.98948 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5940 1.9855 -0.8333 5 6 3.5400 1.4450 -0.1441 6 1 4.1558 1.8859 0.6259 7 6 4.1264 0.8844 -1.2589 8 7 5.4355 0.8871 -1.3850 9 14 3.0619 0.1150 -2.5872 10 1 2.8453 -1.3212 -2.2778 11 1 1.7522 0.8133 -2.6381 12 1 3.7417 0.2412 -3.9014 13 7 1.6683 2.0933 1.2635 14 6 0.4954 2.9594 1.0845 15 1 -0.0456 2.6577 0.1876 16 6 0.9519 4.4126 0.9402 17 6 1.7528 4.5694 -0.3540 18 8 2.1417 5.9355 -0.5110 19 6 -0.4094 2.8338 2.2830 20 6 0.1328 2.7480 3.5519 21 6 -0.6962 2.6385 4.6521 22 6 -2.0699 2.6037 4.4825 23 9 -2.8810 2.4911 5.5570 24 6 -2.6116 2.6841 3.2109 25 6 -1.7808 2.7984 2.1124 26 1 -0.3633 -1.0268 0.0432 27 1 -0.3634 0.5508 0.8675 28 1 -0.3633 0.4759 -0.9109 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 5.8482 0.4891 -2.1674 32 1 2.4454 2.6112 1.6457 33 1 0.0800 5.0659 0.9092 34 1 1.5783 4.6828 1.7902 35 1 2.6425 3.9413 -0.3090 36 1 1.1372 4.2673 -1.2012 37 1 2.6539 6.1091 -1.3125 38 1 1.2045 2.7706 3.6835 39 1 -0.2725 2.5755 5.6436 40 1 -3.6830 2.6567 3.0773 41 1 -2.2031 2.8607 1.1203 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255152939.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:38 Heat of formation + Delta-G solvation = -96.280467 kcal Electronic energy + Delta-G solvation = -22716.571061 eV Core-core repulsion = 19316.694423 eV Total energy + Delta-G solvation = -3399.876638 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 281.153 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.81607 -40.58561 -38.68628 -37.43548 -35.25209 -33.84662 -32.03707 -31.37784 -30.71809 -28.74981 -25.75047 -24.26338 -23.94858 -23.01975 -21.51869 -21.49374 -18.93566 -18.56202 -18.30348 -17.47428 -17.01892 -16.56554 -16.49560 -16.26097 -15.51402 -15.26920 -15.17551 -14.86957 -14.58238 -14.36654 -14.27360 -14.08372 -13.84610 -13.55603 -13.35770 -13.00508 -12.83805 -12.59997 -12.42064 -12.39396 -12.13260 -11.90668 -11.73136 -11.49517 -11.17595 -10.96251 -10.85276 -10.69878 -9.93962 -9.42366 -9.10805 -8.28928 -6.32104 0.25984 0.40869 1.32256 1.35435 1.45169 2.31362 2.69163 3.06271 3.25494 3.38938 3.51424 3.89911 3.96995 4.06954 4.12070 4.28459 4.35412 4.44993 4.48336 4.50514 4.58231 4.63608 4.66064 4.74021 4.93206 5.04895 5.08290 5.15088 5.17467 5.17501 5.25982 5.26962 5.38848 5.41748 5.54290 5.71416 5.74142 6.02814 6.07254 6.50932 6.68160 6.81893 6.87778 7.34683 8.86784 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018848 B = 0.005315 C = 0.004682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.180863 B = 5267.135265 C = 5979.399324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C 0.198 3.802 4 H 0.013 0.987 5 C -0.518 4.518 6 H 0.042 0.958 7 C 0.020 3.980 8 N -0.945 5.945 9 Si 0.941 3.059 10 H -0.274 1.274 11 H -0.243 1.243 12 H -0.304 1.304 13 N -0.668 5.668 14 C 0.131 3.869 15 H 0.084 0.916 16 C -0.127 4.127 17 C 0.069 3.931 18 O -0.590 6.590 19 C -0.073 4.073 20 C -0.071 4.071 21 C -0.159 4.159 22 C 0.072 3.928 23 F -0.151 7.151 24 C -0.152 4.152 25 C -0.090 4.090 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.047 0.953 29 H 0.029 0.971 30 H 0.051 0.949 31 H 0.264 0.736 32 H 0.339 0.661 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.393 0.607 38 H 0.132 0.868 39 H 0.143 0.857 40 H 0.152 0.848 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.696 4.995 5.006 17.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.157 4.157 3 C 0.089 3.911 4 H 0.030 0.970 5 C -0.557 4.557 6 H 0.061 0.939 7 C -0.178 4.178 8 N -0.585 5.585 9 Si 0.769 3.231 10 H -0.201 1.201 11 H -0.167 1.167 12 H -0.232 1.232 13 N -0.299 5.299 14 C 0.021 3.979 15 H 0.103 0.897 16 C -0.166 4.166 17 C -0.009 4.009 18 O -0.398 6.398 19 C -0.074 4.074 20 C -0.090 4.090 21 C -0.178 4.178 22 C 0.053 3.947 23 F -0.130 7.130 24 C -0.171 4.171 25 C -0.108 4.108 26 H 0.071 0.929 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.158 0.842 33 H 0.099 0.901 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.242 0.758 38 H 0.149 0.851 39 H 0.161 0.839 40 H 0.170 0.830 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -16.268 4.461 5.731 17.815 hybrid contribution 1.034 0.003 -1.455 1.785 sum -15.234 4.464 4.276 16.441 Atomic orbital electron populations 1.21796 0.95139 1.01426 1.01746 1.21830 0.96009 0.98574 0.99304 1.19436 0.92546 0.91599 0.87562 0.96959 1.21528 0.91657 1.37525 1.04949 0.93944 1.25688 0.95621 0.96180 1.00280 1.70037 1.11139 1.46986 1.30316 0.85973 0.79905 0.79581 0.77652 1.20085 1.16670 1.23192 1.60542 1.07930 1.33641 1.27774 1.20513 0.91864 0.90076 0.95487 0.89747 1.22079 1.00373 0.97257 0.96887 1.22310 0.98425 0.82499 0.97659 1.86328 1.76700 1.27296 1.49445 1.19910 0.93763 0.99186 0.94493 1.20904 1.00360 0.96531 0.91182 1.21281 0.91612 1.03909 1.00985 1.17915 0.88431 1.04644 0.83715 1.91456 1.73010 1.93818 1.54712 1.21259 1.01865 1.03476 0.90464 1.21085 0.92027 0.98173 0.99503 0.92913 0.91141 0.93410 0.95330 0.92985 0.92692 0.84190 0.90109 0.91437 0.93696 0.93663 0.75789 0.85056 0.83937 0.82999 0.83320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 9.03 71.98 0.65 -3.86 16 2 C -0.12 -4.73 5.10 30.59 0.16 -4.58 16 3 C 0.20 8.14 0.69 44.17 0.03 8.17 16 4 H 0.01 0.53 5.48 -2.39 -0.01 0.51 16 5 C -0.52 -26.79 8.40 25.60 0.22 -26.58 16 6 H 0.04 2.45 7.65 -2.91 -0.02 2.43 16 7 C 0.02 1.12 5.45 84.65 0.46 1.58 16 8 N -0.94 -56.35 13.96 21.45 0.30 -56.05 16 9 Si 0.94 42.79 24.41 68.60 1.67 44.46 16 10 H -0.27 -12.27 6.82 99.48 0.68 -11.59 16 11 H -0.24 -10.00 6.54 99.48 0.65 -9.35 16 12 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 13 N -0.67 -23.08 4.90 -477.15 -2.34 -25.42 16 14 C 0.13 3.66 1.30 44.17 0.06 3.71 16 15 H 0.08 2.35 6.36 -2.39 -0.02 2.33 16 16 C -0.13 -3.53 4.89 30.60 0.15 -3.38 16 17 C 0.07 2.15 5.96 71.98 0.43 2.57 16 18 O -0.59 -17.58 13.66 -148.98 -2.03 -19.62 16 19 C -0.07 -1.81 4.31 -19.86 -0.09 -1.89 16 20 C -0.07 -1.80 9.32 22.26 0.21 -1.59 16 21 C -0.16 -3.73 10.03 22.31 0.22 -3.51 16 22 C 0.07 1.69 7.30 22.37 0.16 1.85 16 23 F -0.15 -3.69 17.27 44.97 0.78 -2.91 16 24 C -0.15 -3.13 10.03 22.31 0.22 -2.90 16 25 C -0.09 -1.89 9.67 22.26 0.22 -1.68 16 26 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.07 2.09 6.10 -2.39 -0.01 2.08 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.03 1.22 3.19 -2.39 -0.01 1.21 16 30 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 32 H 0.34 12.42 7.27 -89.70 -0.65 11.77 16 33 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.07 1.94 8.01 -2.39 -0.02 1.92 16 35 H 0.04 1.70 6.14 -2.39 -0.01 1.68 16 36 H 0.05 1.34 8.09 -2.39 -0.02 1.32 16 37 H 0.39 8.75 9.12 -74.06 -0.68 8.07 16 38 H 0.13 3.36 7.69 -2.91 -0.02 3.33 16 39 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 40 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 41 H 0.15 2.49 8.04 -2.91 -0.02 2.46 16 Total: -1.00 -61.42 326.28 1.12 -60.30 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: -0.36 Total: 31.31 kcal Atomic # 6 Polarization: -35.17 SS G_CDS: 3.10 Total: -32.08 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -2.04 Total: -81.47 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -2.03 Total: -19.62 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.78 Total: -2.91 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 1.67 Total: 44.46 kcal Total: -61.42 1.12 -60.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152939.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.978 kcal (2) G-P(sol) polarization free energy of solvation -61.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds